ID HQ010042; SV 1; linear; genomic RNA; STD; VRL; 7908 BP. XX AC HQ010042; XX DT 03-OCT-2010 (Rel. 106, Created) DT 29-JUN-2011 (Rel. 109, Last updated, Version 3) XX DE Calicivirus chicken/V0021/Bayern/2004, complete genome. XX KW . XX OS Calicivirus chicken/V0021/Bayern/2004 OC Viruses; Riboviria; Caliciviridae. XX RN [1] RP 1-7908 RX DOI; 10.1007/s00705-011-0964-5. RX PUBMED; 21404111. RA Wolf S., Reetz J., Otto P.; RT "Genetic characterization of a novel calicivirus from a chicken"; RL Arch. Virol. 156(7):1143-1150(2011). XX RN [2] RP 1-7908 RA Wolf S., Reetz J., Otto P.; RT ; RL Submitted (02-AUG-2010) to the INSDC. RL Institute of Microbiology, Dresden University of Technology, Zellescher Weg RL 20b, Dresden 01217, Germany XX DR MD5; 88010ed2c27b60654375badb909f3166. DR EuropePMC; PMC4609679; 26292294. DR EuropePMC; PMC6447618; 30944402. XX FH Key Location/Qualifiers FH FT source 1..7908 FT /organism="Calicivirus chicken/V0021/Bayern/2004" FT /host="chicken" FT /isolate="Bavaria04V0021" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2004" FT /db_xref="taxon:889389" FT CDS 5..6940 FT /codon_start=1 FT /product="polyprotein" FT /note="contains non-structural proteins 2C helicase/NTPase, FT 3C cysteine protease, and RNA-dependent RNA polymerase, and FT a major structural capsid protein (VP1)" FT /db_xref="GOA:E2J7X9" FT /db_xref="InterPro:IPR000317" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001665" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR004005" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:E2J7X9" FT /protein_id="ADN88287.1" FT /translation="MKMVTLALAPITPIGAFLVIPPLFARRWMVSSMTFGLVAHAPQAT FT TTPAPETNPTSEQVLPNPPEPSFWHRLIDGVAPPQEPPLLSAITSLISLLGGLANLTFT FT ALVEKVRPVALLTILRAHGWRLTIPCLTAVLELYGMVRSTTDLLIDGLSWFIDFIGRHL FT PCKMQAGGEEDSDTDLEDLYTRENPSRLSPRVIQLIGAVAALPIALLLGRAACRPILRF FT LGSLSRVNTIPTFVKNVASLVSWGKNHLASQRIRRTIGGFIMVEDEVARNINNSTAPQL FT DAYSSTIDQLLEEARERQVSHPGHPLLSALTKHASDLKELQNQLRGKLSLLAKRDPPAF FT YLFTGPPGIGKTTLVQHLAARLSPIAPSNFPGHLDHYDTYNPGPVCIWDEMTNTPPDLM FT VQHVLGMVNSTPYPLNCDRPENKGMVFNSRVVFATSNLSTPLDPGHPLAGAFYRRVQII FT DCSAPTISNYITETGEMPPSTHYRQDGSHITLKKRPRMAYTPQGDLLTSDGVARKGRIT FT PTTPDAILTSLRGTVVMEAGRRILLVVDKNWPEALPTSWMFESRGHQVDVVVDGPETNQ FT EANVLILAVMNANDWPAHRVAGLLKKVNPALWSLAYVAGTPEVVVASKRISPGDLMDHV FT KRTWTAPQNFREEQGWHPDWPAYYAKCREAGRLPGYVLLGIDPALAPDLATHLHQWAAR FT RGIPLPIYDGTKNPCAAIERAETEILTAIVMVKPIDDPDLKVTHFDPTRPPGLSLSDVI FT QTENNEALEKFLGHVWAPGTISPHILHRITSACELDVSDSSTGVGAVMNHFSLASGVRV FT IWQAWKNAGSTSQFFQTLLTMAARPEPRLTVLHWGDSTYWLYTSTCVGFAITPRIAPHR FT LPGCARPRPAGDRSLYGLLSEMLSTFLTALRNAAPLILTLYSWNQLNSTEMEKKKGKTK FT HGRGRRHAGGGRGPRLTDEDYDEWQQMREDWREDVTAEQYYQAKYGENRDTKTSQRYDA FT WRRLKDLRAGQNDPRMSRPETRREAGLVSRHHGLSRQDLGFATSRAERRLATYDASNPG FT DDEAPRRLRHHMEGGITSPVVPALSGSLEVGWAVHLGSGRFILPKHLGATTIAGHPFVV FT CGLRNVDLLFVDCQALRSIPQVRIGTGHPVKLHGRGYINASKTTATHLLPVGTVQGYSY FT NLLAGITKQGDCGLPLYDAAGGVVGIHVARNQVVSICLAYQQLTEAAARPLRSFRGLDV FT VDSEVPSGPPMTVTRYWVAPGMEFDEQMPYQPGLVGSNDPRNPAPLVTILTSGLAPYTD FT PGPDIPPAELALARAQVTAALQALMGVEVSPNLDFAAAWGSLNKDTSCGPLVPGKKRDY FT MDEAGNLLPGTLRDHLSTSWGIATTGKALRHIYALALKDELLPRRKIYETPKKRLLWGC FT DAGVALAAAGVFQPVYERIKSTAAWGPISVGICLERPEVFNAFQHRFTGPVSCLDYSGW FT DSTMHHAVITAAVEILSVFAEDTPLTHSVVSTLTSPAIGCFMGCEVTVKRGLPSGQPGT FT SMINSVCHMLYFCMALNISARGACLPPLQNPILDCELATYGDDCIYKFPTLYQGAFGNF FT IQALRTLGLKPTAPDKTSDIALGLRIVYLKRELRDAEGNWRDGPVLDLDSIVRQAYWVR FT GTAHRDPREVATRVHDGRGLQLDLALAALSQHGPEVFSQNVHPFIRTALASGCPISLTT FT WEVAHQWWKDFSASLSTAEGDITTLVMSPKVDYVMEGVTTPPAPRGQAPTGTPQTTQEL FT SLATSGMVVTAPDTGVPVAPQPVAPQAPTIIEASGGITTLPPDMASMFVQVGRLGWNGT FT NPTGTMLGTFDLGPALNPFTRLIAQAYCAWGGGFEFQVMLSGSGAYGGRLLIGIFPPGI FT NPGNQDPTAFPHFYVDARESSPVTFPVPDLNPARYHSTNGADLTTSVAIFVAAPLLNPF FT SANNGYSCEITILARPGPDFGFAMLRTPTTTEVTVIRDALGRSTAGWIGCRWATTITSI FT TPFLGARDTRVYNHFTSQGTTAGWGNGWPYTRIYVNIYNTTTSHPGPPSSGLTAGQFLS FT VQAAPDSGQAPTVIPGIPPGWTDLPTSQVTVSQGADPSAGSGAMYVGILATPTNSGPDI FT TEAYSERLFQQNGMISGGATSGTILPVPNNVSNQTLAFAIGETRTGSSATTAQTIVASC FT MCWFTATNTSPGDNALTVPGYNGRAAPYHHTILSFNSHVPTNYPGGGTIGSSQPVPLST FT TLAANPSDGWDATRMAVWNLTGGGYTRQLGMLSDGTMVTGNFTGTVSLTTPHEISFQGF FT SSITAPLQPPTPNGNDAAFRFVNW" FT CDS 6940..7803 FT /codon_start=1 FT /product="putative minor capsid protein" FT /note="VP2" FT /db_xref="UniProtKB/TrEMBL:E2J7Y0" FT /protein_id="ADN88288.1" FT /translation="MAAAGFAAVAGGASNLISSLGSTATNAASLAIQKELGEKSLAIQQ FT QGQMLSAVSPYISADAYMKTIGAAIEARYDAPTAMGVEKSYAMMRSLNPNWGYTLNGNH FT TMPEVRTPTVGSVSAPVLSPLNLSTSFQSTQSYTINNGQAIDRQSNWGSVRASSWVNNP FT SNYSRDTTMSGTHGSSIGTVSPFSSVRSSSSSNSSFSVLNWEGYVYNSWPGRTISTQTD FT PHHTPVADAGVQATVSSADASVGTRPRTYRFNSSRSSWNPNAFRNPQMAIDLNTPHGGP FT PARYPR" XX SQ Sequence 7908 BP; 1730 A; 2378 C; 1893 G; 1907 T; 0 other; gtagatgaag atggtgacct tagctttggc tccaatcaca cctattgggg cctttttggt 60 gatcccgcca ctgttcgcaa gaaggtggat ggtctcttcc atgacattcg gactggtagc 120 tcacgccccc caagcaacta caacgcccgc tcctgagact aaccccacct cagaacaggt 180 cctccctaac ccgcctgagc ctagcttctg gcaccgactg attgacgggg tcgcacctcc 240 ccaggaaccc ccacttctct ctgccatcac tagccttatc tcactcttag gtggtctagc 300 caatctgacc ttcactgccc ttgttgaaaa ggtcaggcct gtagcccttc tcactatcct 360 tcgggcacat ggctggcgct tgaccatacc ctgtctcacc gctgttcttg aactctatgg 420 tatggtgcgc tcaaccacag acctcctgat cgacggactt agctggttca tagactttat 480 tggtaggcac ctcccctgta aaatgcaagc tggcggggag gaggactcag acactgacct 540 ggaggacctc tataccaggg agaacccctc ccgactctcc cccagggtca tacagctcat 600 aggggctgtt gctgcactac ccattgcact cctcttaggt cgtgcggcct gtcggcccat 660 cctccgcttt cttggctcgc tctcacgcgt gaacaccatt ccaaccttcg tgaagaacgt 720 agctagccta gttagttggg ggaagaatca tcttgcctcc caacggatta ggaggactat 780 tggcggtttc attatggttg aggatgaagt tgcaagaaac attaacaact caactgctcc 840 acaacttgat gcctactcca gtactattga ccaactcctg gaggaggctc gtgagcgcca 900 agtctcccat ccggggcacc ctttgctctc agccctgaca aagcatgcct cagatcttaa 960 ggagctccaa aaccaactcc gggggaaact ctccctactt gccaagcgtg atccaccagc 1020 cttctacctt tttactggcc cacctggtat tgggaaaacc acactggtgc aacatctggc 1080 agctcgtctc tcaccaattg ccccctccaa cttccctggg catttagacc actatgacac 1140 ctacaaccca gggccagtct gtatttggga tgagatgaca aatacaccac ctgatctaat 1200 ggtccagcat gttctgggga tggttaactc aacaccctac ccccttaact gtgaccgacc 1260 agagaacaag gggatggtct tcaactcacg agttgtcttt gcaactagca atctctccac 1320 ccccttggat ccggggcatc ccttagctgg tgccttctat cggcgtgtcc agattattga 1380 ctgctctgcc cccaccatct ctaactatat tactgagact ggggaaatgc caccctcaac 1440 acactatcgc caggacggta gccacatcac acttaagaaa cgaccccgta tggcctatac 1500 acctcagggt gaccttctaa catcagatgg ggttgcccgt aagggacgca ttactcccac 1560 aacacctgat gcaattctta cctccctccg tggcactgtg gttatggaag cgggcaggcg 1620 tatcctcttg gttgtggata aaaattggcc agaggcactt ccaactagtt ggatgtttga 1680 atcccgtggc caccaagtgg atgtcgtcgt ggatggacct gagaccaacc aggaggctaa 1740 tgtcttgatc ctagcagtca tgaatgccaa tgactggcca gcccatcgtg tggccggtct 1800 tctaaagaaa gttaatcccg cgctctggtc tctggcctat gtagctggca cacctgaagt 1860 tgttgttgcc tcaaagcgga taagcccagg tgatctgatg gaccatgtca aacgcacttg 1920 gactgcccct cagaatttcc gtgaggagca gggctggcat cctgactggc cggcctacta 1980 tgccaagtgc cgtgaggcgg gacgcttacc tggctacgtt ctcctgggga tagaccccgc 2040 tttggcacca gatctcgcaa ctcacctcca tcagtgggct gccaggcgag gtatcccgct 2100 tcccatctat gacgggacta agaacccttg tgcggcaatt gagcgtgctg agacagagat 2160 cctcactgca attgtgatgg ttaaacccat tgatgacccg gaccttaagg tcacccactt 2220 tgacccaact cggcctcccg gtttgtccct ctctgatgtc atccaaactg agaacaacga 2280 ggccctggag aagttcttgg gtcatgtctg ggcccctggg acaataagtc cccatatcct 2340 ccacaggata acttcggcct gtgaattaga tgtgagtgac tcgagtactg gagttggagc 2400 tgttatgaat cactttagcc tggctagtgg tgtgcgcgtc atctggcaag cctggaagaa 2460 tgctggctcc acctcgcaat tcttccagac cctcttgact atggctgccc gtcctgaacc 2520 gagactaact gttcttcact ggggtgactc cacctactgg ctctacacct ccacctgtgt 2580 tggctttgca atcacccctc gtattgcccc ccaccggcta ccaggctgtg cccggcctcg 2640 acctgccggg gatcggtcac tttatggcct cctcagtgag atgttgagca cctttcttac 2700 cgcacttagg aatgcagccc ccctcatcct cacactctac tcctggaatc agttaaactc 2760 cactgagatg gagaaaaaga aggggaagac aaaacacggc cgtgggcgac gtcatgctgg 2820 tggtggccgt ggtccccgac tgacagatga agactatgat gagtggcaac aaatgcgaga 2880 agactggcgg gaggatgtca ctgctgaaca gtactaccag gccaagtacg gtgagaatcg 2940 tgacacaaag acctcacagc gctatgacgc ctggcggcgt cttaaagatc ttcgcgctgg 3000 gcagaatgac cctcgcatgt cccggcctga aacccgtcgt gaagctggtc ttgtctcacg 3060 acaccacgga ctctcaagac aggacttggg ctttgccacc tcacgtgctg aacggcgcct 3120 tgccacctat gatgcctcca acccaggtga tgatgaggct ccacgccggc ttcgacatca 3180 tatggagggt gggataacct ctccagtagt tcctgccctc tccggctccc ttgaggttgg 3240 ctgggcagtc caccttggct ctggtcgctt cattcttcct aaacaccttg gcgcaacaac 3300 gattgctggt catccctttg ttgtttgtgg ccttcggaat gtcgatctgc tctttgtgga 3360 ctgccaagca ttgcgctcaa taccccaggt taggattggt acaggtcacc cagttaagct 3420 gcatggtcgg gggtatatca atgcctcgaa aaccactgcg acacacctcc tccctgttgg 3480 cacagtccaa ggctactcct acaacctcct tgctggtatc accaagcaag gtgactgtgg 3540 tctgcccctc tatgatgcag ctggtggtgt tgtgggcatt catgttgcga gaaatcaggt 3600 tgtctcaatc tgccttgcct atcagcaact tactgaggca gctgccaggc ccctacgctc 3660 ttttcgtgga cttgatgttg ttgactcaga agtccctagt ggtcccccaa tgactgtgac 3720 ccgctactgg gtggcacctg gaatggaatt tgacgaacag atgccctatc aaccaggctt 3780 ggttggttcc aatgatccta ggaacccagc accacttgta accatcctca cctctgggct 3840 agcaccctat acagatccag ggccagacat tccaccagca gagcttgccc tggcccgtgc 3900 acaggtcact gccgccctcc aggcacttat gggtgttgaa gtttccccca acttagactt 3960 tgctgcagcc tggggctcac tcaacaagga cacctcttgt gggcccttgg taccgggtaa 4020 gaagcgtgac tacatggatg aggccggtaa cctcctccca ggtactctcc gtgatcacct 4080 ctcaacctct tgggggattg ccacaactgg aaaagcccta cgccacattt atgccctggc 4140 actgaaggat gaactcttgc caagaaggaa gatctatgaa acccccaaga agagactcct 4200 ctgggggtgt gatgctggtg ttgcacttgc tgctgcaggg gtcttccagc cagtctatga 4260 gcgcattaaa tcaactgctg cctggggccc aatctcagtt ggcatctgtc tggagcgacc 4320 agaggtcttt aatgcattcc aacatcgctt cactggtcca gtctcctgcc ttgactactc 4380 tggctgggac tcaactatgc accatgccgt aatcactgcg gctgttgaga tcctctccgt 4440 ctttgcggaa gacactcccc tgacgcactc cgtggtctct accttaacct caccagcaat 4500 tggctgcttt atgggctgtg aggttacggt caagcgtggt ctcccctctg ggcaacctgg 4560 gacctcgatg atcaactcag tctgccacat gctctacttc tgcatggccc ttaacatctc 4620 ggccagaggg gcctgtttac cgccactcca gaatcccatc cttgactgtg agcttgcaac 4680 ttatggtgat gactgtatct ataagttccc caccctctat cagggggcct ttggaaactt 4740 tatacaggca ctccgcacat taggcctaaa acccactgct ccggacaaga cctcggacat 4800 agcacttggc cttcggattg tctatcttaa gcgtgaacta cgcgacgctg aggggaactg 4860 gagggatgga cctgtcctgg acctagactc cattgttaga caagcctact gggtccgtgg 4920 aactgcacat agggacccaa gagaagtcgc caccagggtc cacgatgggc gtggacttca 4980 gcttgacttg gccttggccg ccctctcaca gcatggccca gaagtcttct ctcagaatgt 5040 gcaccctttc atacgcacag ctctagcctc tggctgcccg atctccctta ccacctggga 5100 ggtcgcacat cagtggtgga aggatttctc cgcaagcctt agcactgcgg aaggagacat 5160 aacaacacta gtcatgtcac cgaaggttga ttatgttatg gagggtgtca ccacaccccc 5220 ggcccctcgg ggccaggcgc ctacgggcac cccacaaaca acacaagaac tttcgctcgc 5280 cacctctggc atggtggtca ccgcccctga cactggggtg ccggtggccc cccagccagt 5340 ggccccacag gctccaacca tcattgaagc ctcaggtggg atcaccacct taccccctga 5400 tatggcgagc atgtttgtac aggttgggcg tcttggctgg aacggtacca atccaactgg 5460 tactatgctt ggcacctttg acctcggccc tgctctgaac cccttcacgc gactcattgc 5520 tcaagcctac tgtgcctggg gtggtggctt tgaatttcag gtcatgctct cggggtcagg 5580 ggcctatggt ggtcggttgt taataggaat ctttccacca gggattaatc caggcaatca 5640 ggacccaact gccttcccgc atttctatgt ggatgcacgg gaatcttcac cagtcacctt 5700 tcctgtccct gaccttaatc ctgctcgcta ccactcaaca aatggtgctg acttaacaac 5760 ctcagtggcc atcttcgttg ctgcaccact cttaaacccc ttttcagcga ataatggcta 5820 ctcctgcgag atcaccatcc ttgctcgccc tggccctgac tttggctttg caatgctgcg 5880 taccccaaca actacagagg tcacggtcat tcgggatgca cttggacgca gcacggccgg 5940 ctggattggt tgccgttggg ccaccacaat tacctccatc acacccttcc ttggtgcaag 6000 ggatactcgg gtctataacc acttcacttc ccaaggtaca actgctggct ggggcaatgg 6060 ctggccctac actcggatct atgtcaacat ctataataca acaaccagcc atcccggccc 6120 accctccagt ggtcttactg cggggcagtt tctctcagtg caggctgccc cagactcagg 6180 gcaagcccca actgtcatac ctgggatccc ccctgggtgg actgatttac ccacttccca 6240 agtcacagtt agccaaggtg cagacccctc agcaggctct ggtgccatgt atgtcggtat 6300 tcttgcaacc cccaccaaca gtggtccaga cataactgag gcttattctg aaaggctctt 6360 ccaacagaat ggtatgatct caggtggtgc tacatctggt accatcttgc ctgtccccaa 6420 taatgtctct aatcagaccc ttgcttttgc cattggggaa acaagaactg ggagttcagc 6480 caccactgca cagaccatcg tagcatcctg catgtgctgg ttcactgcta ctaacacctc 6540 acctggtgat aatgccctca ctgtcccggg ctataatggc cgagcggctc cctaccacca 6600 cacaatcctt tcattcaact cgcacgtgcc aacaaactat cctggtggtg gcactattgg 6660 ctcctcacag ccagtacccc tttcaaccac gcttgccgcc aacccctctg acggctggga 6720 cgctactagg atggctgtct ggaatctcac tggtggtggc tacacccggc agttaggcat 6780 gctctctgat gggactatgg tgactgggaa ctttacaggc acggttagcc tgactacacc 6840 gcatgagatc agctttcaag gcttctccag tatcactgcc cccttgcaac ccccaacgcc 6900 gaatgggaac gatgcggcgt tccgatttgt taattggtaa tggctgcagc ggggtttgct 6960 gccgttgctg ggggggccag caatctgatc tcatctctgg gttcgactgc aacaaatgct 7020 gcttcccttg ccattcagaa ggaattgggt gaaaagtctc tggcaattca acaacagggc 7080 cagatgcttt cagcagtctc tccctacatc tcagctgatg cctatatgaa aactattggt 7140 gcagccattg aggcgcgcta tgatgcccca acggcaatgg gtgttgaaaa atcttatgcc 7200 atgatgcgct cccttaatcc caactggggc tacaccttga atggcaacca cacaatgcca 7260 gaggttagaa caccaactgt aggctcagtg agtgcaccag ttctctcacc cctgaatctt 7320 tccaccagct ttcagagtac tcagtcatac actatcaata atggtcaggc tattgatcgc 7380 cagtccaact ggggctcagt gcgtgcaagc tcttgggtta ataatccctc gaactactcg 7440 agggacacaa caatgtctgg cacacatggt tcatccattg ggacagtgag tccgttctcc 7500 tcagttcggt cttctagctc gtctaacagt agcttctctg tcctcaactg ggaaggctat 7560 gtctataaca gctggccagg tcgcaccatc tcaacccaaa ctgacccaca ccatacccca 7620 gtggctgacg ctggtgtgca ggccacagtc agtagtgctg atgcgtctgt tggtacgcgt 7680 cctaggacgt acagattcaa ctccagcagg agcagctgga atccaaatgc cttccggaac 7740 ccccagatgg caattgactt gaacaccccc catgggggcc cccctgcaag atatccccgt 7800 tgatatcccc taatcacaac agtgaaaatt tctttgctga tttctgttta gttttaggtt 7860 gtaagtttac tagataatct tagacttagc ttagatagtg gttctaac 7908 //