ID HQ008338; SV 1; circular; genomic DNA; STD; VRL; 2627 BP. XX AC HQ008338; XX DT 13-DEC-2010 (Rel. 107, Created) DT 02-AUG-2011 (Rel. 109, Last updated, Version 3) XX DE Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] clone pBuA8 DE segment DNA-A, complete sequence. XX KW . XX OS Sida golden mosaic Buckup virus-[Jamaica:St. Elizabeth:2004] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2627 RX DOI; 10.1007/s00705-011-1030-z. RX PUBMED; 21625977. RA Stewart C.S., Kon T., Gilbertson R.L., Roye M.E.; RT "First report of the complete sequence of Sida golden yellow vein virus RT from Jamaica"; RL Arch. Virol. 156(8):1481-1484(2011). XX RN [2] RP 1-2627 RA Stewart C.S., Kon T., Gilbertson B.L., Roye M.E.; RT ; RL Submitted (30-JUL-2010) to the INSDC. RL The Biotechnology Centre, The University of the West Indies, Mona Road, RL Mona, St. Andrew Kgn 7, Jamaica XX DR MD5; 8f9b9a9a49c58d6b4a6176e9376dd4ae. XX FH Key Location/Qualifiers FH FT source 1..2627 FT /organism="Sida golden mosaic Buckup virus-[Jamaica:St. FT Elizabeth:2004]" FT /segment="DNA-A" FT /mol_type="genomic DNA" FT /country="Jamaica" FT /clone="pBuA8" FT /db_xref="taxon:929769" FT misc_feature 22..2488 FT /note="IR; contains sequences essential to the initiation FT of replication" FT gene 211..966 FT /gene="CP" FT CDS 211..966 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /function="viral encapsidation" FT /db_xref="GOA:E5KBW4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E5KBW4" FT /protein_id="ADR77515.1" FT /translation="MSKRDGSWRSIAGMSKVKRTLNFSPRGGGGPTSSRAAEWVNRPMY FT RKPRIYRTLKTPGVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVYNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(963..1361) FT /gene="REn" FT CDS complement(963..1361) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer" FT /db_xref="GOA:E5KBW5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5KBW5" FT /protein_id="ADR77516.1" FT /translation="MDSRTGELITVPQAENGVYTWEIENPLHFRMYQVEDPLYTNTRIY FT TIQIRFNHNLRKALHLHKAFLNFQVWTISMTASGSTYLARFSRLVNLYLDRLGVISINN FT VIRAVRFATNRSYIEHVLENHSIKFKIY" FT misc_feature complement(join(1108..1373,1421..1495)) FT /note="similar to transcriptional activator protein; TrAP" FT misc_feature complement(1408..2543) FT /note="similar to replication-associated protein; Rep" FT gene complement(2078..2335) FT /gene="AC4" FT CDS complement(2078..2335) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /function="possible gene silencing suppressor" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E5KBW6" FT /protein_id="ADR77517.1" FT /translation="MGSLISTFSYSSKASTSARITDSSIWCPQPGQYISIRTYRELNPA FT PTSSPTSRRTETPSNGGNSKSTADLLEEVSSQLTIHMPRR" XX SQ Sequence 2627 BP; 636 A; 595 C; 631 G; 765 T; 0 other; accggatggc cgcgcatcgg tgtacgcccc cccccccccg cggtcccccc cctcccgcgc 60 gatctttaat ttgaattaaa gatggaccag acgctctcgt ccaatcataa cgcgtctgac 120 gagtctatat attttaaaca acttgggcgc taagttgttg tgtgaccgtt ataaattaaa 180 tatgatttgg cccactgtct ttaactcaaa atgtctaagc gcgatggctc ttggcgctct 240 atcgcgggaa tgtcaaaagt gaaacgcact ttgaatttct cccctcgtgg aggtggtggg 300 ccgacaagtt caagggccgc tgaatgggtg aacaggccca tgtacaggaa gcccaggata 360 taccggacgc taaaaacacc cggagtgccc agaggctgtg aaggcccgtg taaggtccag 420 tcgtatgagc aacgccacga catctctcat gtgggaaagg tcatgtgcat ctccgatgtg 480 acacgtggta atggcattac ccatcgtgtg ggtaagcgtt tttgtgttaa gtctgtgtat 540 atccttggta agatatggat ggacgagaac atcaagctca agaaccacac gaacagtgtc 600 atgttctggt tggtcagaga ccgtagaccc tatggcacgc caatggattt tggccaagtg 660 ttcaacatgt tcgacaatga gcctagcact gctacggtga agaacgatct tcgtgatcgt 720 tatcaagtga tgcacaagtt ctatggcaag gtgacaggtg gacagtatgc cagcaacgag 780 caggctatag tcaaacgatt ctggaaggtc tacaatcatg tggtctacaa ccatcaagag 840 gctggcaagt acgagaatca tacggagaac gccctgttat tgtatatggc atgtactcat 900 gcgtctaatc ccgtgtatgc aactttgaag atcagaatct atttctacga ttcgatcact 960 aattaataaa ttttgaattt tattgaatga ttttccagta catgttcgat atacgatctg 1020 tttgtcgcga atcgtacagc tctaattaca ttgttaattg aaatcacgcc taatctatct 1080 aaatataaat taactaagcg actaaatcta gctaaataag tcgacccaga agctgtcatc 1140 gatatcgtcc agacttggaa gttcaggaag gctttgtgga gatgcaacgc tttcctcagg 1200 ttgtggttga accgtatttg tatggtgtat atcctggtgt tcgtgtacaa cgggtcctct 1260 acttggtaca tcctgaaatg taggggattt tctatctccc aggtatatac gccattctct 1320 gcctgaggta cagtgatgag ttccccggtg cgtgaatcca tgaccggtgc agctatgtgg 1380 aagtatatgg agcaaccgca ctccagatca atccgccgtc tctgatggcc ctcttcttgg 1440 cttgcttgtg tttctgtttg atagagggcg gatgtgaggg tgatgaagag cgcattcttc 1500 aatgtccagt tcttgagacc tgtattttcc tctttgtcta ggaagtcttt ataactggca 1560 ccctcacctg gattgcaaag cacgattgat ggaatccctc ctttaatttg aactggcttg 1620 ccgtatttgc aatttgactg ccagtccttc tgggccccca gaagttcttt ccagtgcttt 1680 agctttaaat attgcggtgc gacgtcatca atgacgttat actccacttc gtttgaaaaa 1740 actcgggaat tgaagtccag gtgtccacta aggtaattgt gtgggcctaa tgcacgtgcc 1800 cacatcgtct tccctgtcct cgaatcacct tccactatga tactaactgg tctgtccggc 1860 cgcgcagcgg aacctcctcc aaaataaccg tccgcccact cttgcatctc atcgggaacg 1920 ttagtgaatg acgagagttg aaacggaggg acccacggtt ccggagcctt ttgaaatatt 1980 ctggttgcgt tagcaaccag gttgtggttc tggaggaaga aatgttgcgg ttgttcttcc 2040 cttattattt gcagagctgc ctctgctgaa ccggcgttca acgccttggc atatgaatcg 2100 ttagctgact gctgacctcc tctagcagat ctgccgtcga tttggaattg cccccattcg 2160 atggtgtctc cgtccttctc gacgtaggac ttgacgtcgg agctggattt agctccctgt 2220 atgttcggat ggaaatgtac tgacctggtt ggggacacca tatcgaagaa tctgttattc 2280 gtgcactggt acttgccttc gaactgtatg agaacgtgga gatgaggctc cccattttcg 2340 tgtaattctc tgcaaacctt gatgaacttc ttgtttactg gagttgttag gttttgtaat 2400 tgggaaagtg cttcttcttt agtaagagag cactggggat atgtgaggaa atagttttta 2460 gctgagactt tgaaacgttt aatcgatggc atttttgtaa taataagggt gtaccccggt 2520 tgagctctct caaactttct cattcaattg gggtaatggg ttacaatata tagtataacc 2580 ctcatttact gatttgctac accgtggcgg ccatccgcta taatatt 2627 //