ID HQ005276; SV 1; linear; genomic RNA; STD; VRL; 3339 BP. XX AC HQ005276; XX DT 22-NOV-2010 (Rel. 106, Created) DT 22-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Potato virus M isolate VIRUBRA 4/035 223K polyprotein-like gene, partial DE sequence; and 25K protein, 12K protein, 7K protein, coat protein, and 13K DE protein genes, complete cds. XX KW . XX OS Potato virus M OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3339 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT "Molecular analysis of Potato virus M isolates from the Czech Republic"; RL Unpublished. XX RN [2] RP 1-3339 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT ; RL Submitted (29-JUL-2010) to the INSDC. RL Virology, IEB CAS, v. v. i., Na Karlovce 1a, Praha 16000, Czech Republic XX DR MD5; ce4f1acf797f763990f08030846e4950. XX FH Key Location/Qualifiers FH FT source 1..3339 FT /organism="Potato virus M" FT /host="Solanum tuberosum" FT /isolate="VIRUBRA 4/035" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /collection_date="1999" FT /db_xref="taxon:12167" FT misc_feature <1..810 FT /note="similar to 223K polyprotein" FT CDS 849..1538 FT /codon_start=1 FT /product="25K protein" FT /db_xref="GOA:E5KBU6" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:E5KBU6" FT /protein_id="ADQ43722.1" FT /translation="MDVIVDLLYKYKFERLNNKLVCPIVVHCVPGAGKSSLIRELLELD FT SRFCAYTAGVEDQPRLSGNWIKKWSGQQPEGRLVILDEYTLLTEVPPVFALFGDPIQSN FT TSAVQRADFVCSVSRRFGSATCGLLRELGWNVRSEKADLVQVSDIYTKEPLGKVVFFEE FT EVGCLLRSHGVEALSLQEITGQTFEVVTFVTSENSPVINRAAAYQCMTRHRTALHILCP FT DATYTAA" FT CDS 1516..1845 FT /codon_start=1 FT /product="12K protein" FT /db_xref="GOA:E5KBU7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:E5KBU7" FT /protein_id="ADQ43723.1" FT /translation="MPLTPPPDFTKVYLSAALGVSLALVVWLLTKSTLPVVGDRDHNLP FT HGGWYRDGTKSVFYNSPGRLNSIEARKAPLLGQPWAIVVLLVLLIWATHKLGRPNCRAC FT GGSHT" FT CDS 1842..2033 FT /codon_start=1 FT /product="7K protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:E5KBU8" FT /protein_id="ADQ43724.1" FT /translation="MIVYALVGLCAFSIVLYLISQGQSDCVVLITGESVRVQGCQINXE FT FGSVLSKLKPFGCGSFRS" FT CDS 2055..2969 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:E5KBU9" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:E5KBU9" FT /protein_id="ADQ43725.1" FT /translation="MGDSTKKAEXAKDAXTSQEKREARPLPTAADFEGRDTXEXTDGRA FT ADADGEMSLERRLDSLREFLRERRGAIRVTNPGLETGRPRLQLAENMRPDPTNPXNRPS FT IEALSRIKPIAISNNMATSEDMMRIYVNLEGLGVPTEHVQQVVIQAVLFCKDASSSVFL FT DPRGSFEWPRGAITADAVLAVLKKDAETLRRVCRLYAPVTWXHMLAHNAPPADWAAMGF FT QYEDRFAAFDCFDYVENTAAVQPLEGLIRRPTPREKIAHNTHKDIALRGANRNQAFSSX FT NAEVTGGMNGPELTRDYGKSNRK" FT CDS 2966..3292 FT /codon_start=1 FT /product="13K protein" FT /db_xref="GOA:E5KBV0" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:E5KBV0" FT /protein_id="ADQ43726.1" FT /translation="MKHVTRVALLXARAMSTSSGTFVFELAFSXAECAGRPLGGGRSKY FT ARRRRAISIARCHRCYRLWPPTXFTTRCDNKXCVPGISYNVRVAQFIDEGVTEVIPSVI FT NKRE" XX SQ Sequence 3339 BP; 856 A; 692 C; 928 G; 823 T; 40 other; catcgtgtgt tttcaacatg cggtcctgtg tcgttttgcg ccctacatgc ggtacattga 60 gatgaaagtg catgaggtgc taccaaagaa ttactacatc cactcaggga agggcctgga 120 ggagctggat gcttgggtca aggaagggaa gtttgacggt atttgcacgg aatctgatta 180 tgaggcattc gatgcatcgc aagatgaatt tatcatggct ttcgagctgg aattgatgaa 240 gtacttaagg ctgccaagtg atctaatcga ggattacaag ttcatcaaac tagcttgggg 300 tctaaactag gcaatttcgc cataatgcgc ttctccgggg aagcaagcac tttcctgttt 360 aacacactgg ccaacatgtt attcactttc atgaggtata acatacgggg tgatgaattc 420 atatgctttg ctggggacga tatgtgcgcg tcgcgaagat tgcaacccac aaagaaattt 480 gctcacttct tggacaagct caaactgaaa gcaaaggtgc aattcgtaaa caaaccaact 540 ttctgtggct ggcacttgtg ccccgatggt atatataaga agccgcaact cgtgctagag 600 agaatgtgca ttgcgaaaga gatgaacaac ctgagcaatt gcattgacaa ctacgccatt 660 gaggtggcgt acgcatacaa gttgggggag aaggctgtga atagaatgga tgaggaggaa 720 gtcgctgcgt tctacaattg cgtgagaatg attgtgcgaa acaaacacct catccgctcc 780 gatgtgaaac gagtatttga agtgctttaa ttagtgtagc ttaggtattg ctattgtatt 840 gaatatttat ggatgtgatt gtagatttgt tgtataaata caagttcgag cgtttaaaca 900 ataagttggt gtgccctata gttgttcact gcgtacctgg agctggcaag agtagcttaa 960 ttcgcgagtt gttagaattg gatagtcgct tctgtgcata cacagctggt gtagaggacc 1020 aaccaaggtt gagcgggaat tggatcaaga agtggagcgg gcagcaaccg gaaggcagac 1080 ttgtgatttt ggacgagtac actctgttga ctgaagtgcc tccggtattt gcattgttcg 1140 gtgatcccat acaatcaaac acaagcgctg ttcagcgcgc tgacttcgtg tgctcagtaa 1200 gtaggaggtt cggcagtgcc acgtgcgggc tgttgcgaga gttgggttgg aacgttcgga 1260 gtgaaaaggc tgacctggtg caagtatctg atatatacac aaaagaacct ctaggcaaag 1320 tcgtgttttt cgaggaggaa gtgggttgct tgctgagatc acacggggtg gaagcattga 1380 gcttgcagga aataacaggt caaacttttg aagtggtrac gttcgtgact tcagagaatt 1440 ctccagtgat yaatcgagcg gctgcctatc agtgcatgac aaggcatcga acagctctgc 1500 acatcttgtg tcctgatgcc acttacaccg ccgcctgact tcacaaaggt gtacctttct 1560 gctgcactag gggtgtcgct tgctctagtt gtttggctgc ttacaaagag tacactacct 1620 gtggtggggg ayagagatca caacttgcca cacggaggtt ggtacaggga cgggaccaaa 1680 tcagtgtttt acaacagccc cggccggctc aactcaatag aagctagaaa agctccgcta 1740 cttggtcaac cttgggctat tgtcgtgctg ctggtgctgc ttatctgggc gacccacaag 1800 ctygggaggc ctaactgtag agcctgtggc ggctcacaca catgatagtg tatgcacttg 1860 tgggattgtg cgcctttagc attgtgctgt atctratctc kcagggccag tctgactgcg 1920 tggtgttaat taccggcgaa tcagtgcgcg tgcaagggtg ccaaatcaac agwgaattcg 1980 gwagtgtgct atcgaaattg aagccgtttg ggtgtggttc ctttaggtca taaggtgaat 2040 ctgaaatagt gagtatggga gattcaacga agaaagctga aamygccaaa gatgcargca 2100 cttcgcaaga gaagagggaa gcgcgaccac tgccaactgc tgctgacttc gaggggagag 2160 acacaycrga garcaccgat gggcgwgctg cagatgctga tggagagatg tcattggarc 2220 ggaggctyga cagcctccga gaattcctgc grgagcggag gggcgcaatc cgagtgacta 2280 acccggggtt agagactggc aggccaaggt tgcagctagc tgaaaatatg cgccctgatc 2340 ccacgaatcc gyacaacagg ccgtccatag aagctctcag ccggatcaag ccaatcgcga 2400 tctcaaacaa catggctacw tcwgaggaya tgatgcgcat atatgtgaac ctggaggggc 2460 taggtgtgcc gactgagcac gtgcagcagg tagtgattca ggcwgtgcta ttytgcaagg 2520 acgcaagyag ctccgtattt ctggatccgc grggctcgtt cgagtggccc agaggcgcca 2580 taacagcaga tgctgtcttg gctgtgctga agaaggatgc agaaacacta cgaagggtgt 2640 gtaggctgta tgccccggtg acatggmatc atatgctrgc gcacaacgcg ccyccagcag 2700 actgggctgc catggggttt cagtacgagg atcgcttcgc tgctttcgat tgctttgatt 2760 acgttgaraa yactgctgca gtccaacccc tagaggggtt gatcaggcga cctaccccaa 2820 gggaraagat tgctcacaat acgcacaaag acatcgcgct gcgtggagca aatcgcaatc 2880 aggcgttcag ctctcycaat gccgaggtca ctggcggtat gaatggtcct gaactcacta 2940 gagattatgg maagtcgaat agaaaatgaa gcatgtaact agggtggctt tacttrtagc 3000 gagagctatg agtacttctt caggtacttt tgtgttcgaa ctagctttta gtatrgctga 3060 gtgtgctggt cgaccacttg gtggtgggag atcyaagtac gcacgtcgta grcgtgctat 3120 tagcatagct aggtgtcaca ggtgctatcg cctgtggccc ccaactgygt ttactactag 3180 gtgtgataat aaacwttgtg tgcctggtat ctcttacaat gtgcgcgtgg cgcaatttat 3240 tgatgaagga gtaactgagg tgataccttc agtcatcaac aagcgagagt agccattaaa 3300 tcctatttaa tatataacgt gtgctactat aaataaaat 3339 //