ID   HM998852; SV 1; linear; genomic RNA; STD; VRL; 1899 BP.
XX
AC   HM998852;
XX
DT   26-JUL-2011 (Rel. 109, Created)
DT   26-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate JNi4 segment S9, complete
DE   sequence.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1899
RX   PUBMED; 21331890.
RA   Yin X., Xu F.F., Zheng F.Q., Li X.D., Liu B.S., Zhang C.Q.;
RT   "Molecular characterization of segments S7 to S10 of a southern rice
RT   black-streaked dwarf virus isolate from maize in northern China";
RL   Virol Sin 26(1):47-53(2011).
XX
RN   [2]
RP   1-1899
RA   Li X.D., Yin X., Zhu Q.Q.;
RT   ;
RL   Submitted (28-JUL-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 78b29047e4a81faab5341c8d1afe9191.
DR   EuropePMC; PMC4379580; 25807053.
DR   EuropePMC; PMC6486993; 31029143.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1899
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S9"
FT                   /host="maize"
FT                   /isolate="JNi4"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Ji'ning, Shandong"
FT                   /collection_date="Aug-2008"
FT                   /db_xref="taxon:519497"
FT   5'UTR           1..51
FT   CDS             52..1095
FT                   /codon_start=1
FT                   /product="P9-1"
FT                   /note="non-structural protein"
FT                   /db_xref="InterPro:IPR009268"
FT                   /db_xref="UniProtKB/TrEMBL:G0X762"
FT                   /protein_id="AEK64792.1"
FT                   /translation="MADLERRTFGSYKIEELTIRNDQPTRNTNLSLSQSTENRLSTKKI
FT                   PLLDDGIFELLNYLIDGTNFNKTCYCGFNYSHLPNLERDFNIASLYVRENFEICTDQLN
FT                   LANYVRQPNISIKSPDFTVCLEYVLKTVVESESSTKDQKDDESQKPTSTDSTKNEQEKK
FT                   FVEMSLLPLLNRESEESLTEEILEGEGAVVNVLKLFIKGFLMHLGENPNSYDRQLTVEK
FT                   YRPLLVSIVGYEYLVGTTVPEKKIDHIYYQLATFDNYPFDLLRFQLSSLISTPTSILER
FT                   ITKEGLFKIITSSTLRGAPRQTVLFRGINGSESFLNIKRYRRFRTRIVGNADSVIKSDF
FT                   SSLKLDV"
FT   CDS             1159..1788
FT                   /codon_start=1
FT                   /product="P9-2"
FT                   /note="non-structural protein"
FT                   /db_xref="GOA:F5A192"
FT                   /db_xref="InterPro:IPR009650"
FT                   /db_xref="UniProtKB/TrEMBL:F5A192"
FT                   /protein_id="AEK64793.1"
FT                   /translation="MNPQSSVNIDTYTFNCPFELAKIQIESAKPIMQDFSDFDEIFERP
FT                   LSDSELDDRVEKLELDIEAKVDPVVRRKYGKVGHIMLMIFSFLFFGIFKLTLKMFYHLF
FT                   RCVCCNPLIRGIFSVVCTVVFYIVIFTLIYLVYFFFGDQILAVYHSLTEMSDSGLINST
FT                   KIEEKVNNIIHEGSLFFGSVDPNTGHFQEVEKQVFNGGTVNYTLFH"
FT   3'UTR           1789..1899
XX
SQ   Sequence 1899 BP; 589 A; 336 C; 322 G; 652 T; 0 other;
     aagtttttaa gcctggaact gacacattcc tgcaggaacg aacgcaagag aatggcagac        60
     ctagagcgta gaacgtttgg atcatataaa atagaagaat tgacaattag aaacgaccaa       120
     ccaacaagaa atacaaacct ttcactttct caatcgaccg agaaccgtct ttcaaccaag       180
     aaaattcccc tactcgacga cggcattttt gaacttttga actacctcat tgatggaacc       240
     aatttcaaca aaacgtgtta ttgtggattt aattattctc atctcccgaa tctagaacgt       300
     gactttaaca tcgcttcttt gtatgtacgt gaaaatttcg aaatttgcac agatcaattg       360
     aacctggcta actacgttcg acaaccgaac atcagcatta aatctcctga cttcacagtt       420
     tgtttggaat acgttttgaa aactgtcgtt gaaagcgaat cctcaactaa agaccaaaaa       480
     gatgatgaat cacagaaacc cacctccact gattcaacta agaatgagca agaaaagaag       540
     tttgttgaaa tgtctttgct tcctctgtta aaccgcgaat ctgaagaatc tttgactgaa       600
     gaaattttag aaggtgaagg cgcagtggta aacgtactta aactattcat taaaggattt       660
     ttgatgcatt taggtgagaa tccaaattct tatgatcgtc aactaaccgt tgaaaaatat       720
     cgtccattat tggtttctat tgttggctat gaatatctag ttggtactac agttcctgaa       780
     aagaaaatcg atcacattta ttatcaactt gcaacttttg ataattaccc attcgatctt       840
     ttaaggtttc aactttcttc attaatttcc actccaactt caatattgga aagaataaca       900
     aaagaaggtt tgtttaaaat tattacatca agcactttgc gaggtgcccc acgtcaaact       960
     gttttgttca gaggtatcaa cggtagtgag tcatttttga acatcaaaag atatcgtcgt      1020
     tttagaacca gaattgttgg taatgctgat agcgttatta agtccgactt ttcttcactt      1080
     aaattggacg tttgatactt tacttcttgg tcaatttcat tgtatatcaa tggttgaaga      1140
     atttttcttt tctacattat gaacccacaa tcttcagtta atattgatac gtataccttc      1200
     aactgtccct ttgaattagc aaaaatccaa attgaatccg cgaaaccaat tatgcaagat      1260
     tttagtgatt ttgatgaaat ttttgaacgt cctttgtctg attcggaatt ggatgatcga      1320
     gttgaaaaat tggaattaga tattgaagcc aaagtcgatc ctgtggtaag aagaaaatac      1380
     ggtaaagttg gtcatataat gttaatgatt tttagctttc ttttctttgg gatttttaaa      1440
     ttaacgctta aaatgtttta tcatcttttt cggtgtgtat gttgtaatcc tttaattcga      1500
     ggaattttta gtgttgtttg tactgtagtt ttctacatag tcatttttac gcttatttat      1560
     ttagtttatt ttttctttgg tgatcaaatc cttgctgtat atcattcttt gaccgagatg      1620
     agcgattctg gtttaatcaa ctccaccaaa atcgaagaaa aggttaacaa catcattcac      1680
     gaaggttctt tattttttgg ttccgttgat cctaatactg gccactttca agaagtcgaa      1740
     aaacaagtgt tcaatggagg tactgtaaat tatactttgt ttcactaagt ttctatttta      1800
     tgtgactctg aaaatattca cgctcgtaag tcgattttct tgcagttgtg tatacgctac      1860
     ccaacaaatt cgttctcaag ccggcttaca gctgatgtc                             1899
//