ID HM991708; SV 1; linear; genomic RNA; STD; VRL; 3340 BP. XX AC HM991708; XX DT 22-NOV-2010 (Rel. 106, Created) DT 22-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Potato virus M isolate VIRUBRA 4/016 223K polyprotein gene, partial cds; DE and 25K protein, 12K protein, 7K protein, coat protein, and 13K protein DE genes, complete cds. XX KW . XX OS Potato virus M OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3340 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT "Molecular analysis of Potato virus M isolates from the Czech Republic"; RL Unpublished. XX RN [2] RP 1-3340 RA Plchova H., Cerovska N., Moravec T., Dedic P.; RT ; RL Submitted (27-JUL-2010) to the INSDC. RL Virology, IEB CAS, v. v. i., Na Karlovce 1a, Praha 16000, Czech Republic XX DR MD5; a372d34dd7f1ba50d7af169d4ba20b12. XX FH Key Location/Qualifiers FH FT source 1..3340 FT /organism="Potato virus M" FT /host="Solanum tuberosum" FT /isolate="VIRUBRA 4/016" FT /mol_type="genomic RNA" FT /country="Czech Republic" FT /collection_date="1993" FT /db_xref="taxon:12167" FT CDS <1..811 FT /codon_start=2 FT /product="223K polyprotein" FT /db_xref="GOA:E5KBQ4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E5KBQ4" FT /protein_id="ADQ43727.1" FT /translation="IVCFQHAVLCRFAPYMRYIEMKVHEVLPKNYYIHSGKGLEELDAW FT VKKGKFDGICTESDYEAFDASQDEFIMAFELELMKYLRLPSDLIEDYKFIKXSLGSKLG FT NFAIMRFSGEASTFLFNTLANMLFTFMRYNIRGDEFICFAGDDMCASRRLQPTKKFAHF FT LDKLKLKAKVQFVNKPTFCGWHLCPDGIYKKPQLVLERMCIAKEMNNLSNCIDNYAIEV FT AYAYKLGEXAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDVKRVFEVL" FT CDS 850..1539 FT /codon_start=1 FT /product="25K protein" FT /db_xref="GOA:E5KBQ5" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:E5KBQ5" FT /protein_id="ADQ43728.1" FT /translation="MDVIVDLLYKYKFERLNNKLVCPIVVHCVPGAGKSSLIRELLELX FT SRFCAYTAGVEDQPRLSGNWIKKWSGQQPEGKFXVLDEYTLLTEVPPVFALFGDPIQSN FT TSAVQRADFVCSVSRRFGSATCVLLRELGWNVQSEKADLVQVSDIYTKEPLGKVVFFEE FT EVGCLLRSHGVEALSLQEITGQTFEVXXFVTSENSPVINRAAAYQCMTRHRSALHILCP FT DATYTAA" FT CDS 1517..1846 FT /codon_start=1 FT /product="12K protein" FT /db_xref="GOA:E5KBQ6" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:E5KBQ6" FT /protein_id="ADQ43729.1" FT /translation="MPLTPPPDFTKVYLSAALGVSLALVVWLLTRSTLPVVGDRDHNLP FT HGGWYRDGTKSVFYNSPGRLNSIEARKAPLLGQPWAIVVLLVLLIWASHKLGRPNCRVC FT GGSHT" FT CDS 1843..2034 FT /codon_start=1 FT /product="7K protein" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:E5KBQ7" FT /protein_id="ADQ43730.1" FT /translation="MIVYALVGLCAFSIVLYLVSQGQSDCVVLITGESVRVQGCQINXE FT FGSVLSKLKPFGCGSFRS" FT CDS 2056..2970 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:E5KBQ8" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:E5KBQ8" FT /protein_id="ADQ43731.1" FT /translation="MGDSTKKAETAKDASTLQEKREARPLPTAADFEGKDTSESTDGRA FT ADVDGEMSLERRLNSLREFLRERRGAIRVTNPGLETGRPRLQLAEDMRPDPTNPYNXPS FT IEALSRIKPIAISNNMATSEDMMRIYVNLEGLGVPTEHVQQVVIQAVLFCKDASSSVFL FT DPRGSFEWPRGAITADAVLAVLKKDAETLRRVCRLYAPVTWNHMLTHNAPPADWAAMGF FT XYEDRFAAFDCFDYVENTAAVQPLEGLIRRPTPREKIAHNTHKDIALRGANRNQVFSSL FT NTEVTGGMNGPELTRDYGKSNRK" FT CDS 2967..3293 FT /codon_start=1 FT /product="13K protein" FT /db_xref="GOA:E5KBQ9" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:E5KBQ9" FT /protein_id="ADQ43732.1" FT /translation="MKHVTRVALLIARAMCTSSGTFVFELAFSIAECAGRPLGGGRSKY FT ARRRRAISIARCHRCYRLWPPTVFTTRCDNKHCVPGISYNVRVAQFIDEGVTEVIPSVI FT NKQE" XX SQ Sequence 3340 BP; 870 A; 674 C; 927 G; 856 T; 13 other; tatcgtgtgt tttcaacatg cagtcttgtg ccgttttgcg ccctacatgc ggtacatcga 60 gatgaaagtg catgaggtgc tgccgaagaa ttactacatc cactcaggaa agggtttgga 120 ggagctggat gcgtgggtca agaaagggaa gtttgacggg atttgcacgg agtctgatta 180 tgaggcattt gatgcttcac aagatgaatt tatcatggct ttcgagctgg aattgatgaa 240 gtacttaagg ttaccaagtg atctaatcga ggattacaag ttcatcaagr ctagcctagg 300 atctaaattg ggcaattttg ctataatgcg cttctccggg gaggcaagca cttttctatt 360 taacacgctg gccaatatgt tgttcacctt tatgaggtac aacataaggg gtgatgaatt 420 catatgcttt gctggggatg atatgtgcgc gtcgcgaaga ttgcaaccca caaagaagtt 480 tgctcacttc ctagacaagc ttaaactgaa agcaaaggtg caattcgtga ataaaccaac 540 tttttgcggt tggcacctgt gccccgatgg gatatataag aaaccgcaac ttgtgctaga 600 gagaatgtgc atcgcgaaag agatgaacaa cctgagcaat tgcattgata attacgccat 660 tgaggtggcg tacgcataca agttggggga garggctgtg aatagaatgg atgaggagga 720 agtcgccgcg ttctacaact gcgtgaggat catagtgcga aayaaacacc ttatccgctc 780 tgaygtgaag cgagtatttg aagtgcttta attagtgtag cttaggtatt gctattgtat 840 tgaatattta tggatgtgat tgtagatttg ttgtataaat acaagtttga gcgtttaaat 900 aataagctag tgtgccctat agttgttcac tgtgtgcctg gggctggcaa gagtagctta 960 attcgcgagt tgttagaatt agrtagtcgc ttttgtgcat acacagctgg tgtagaggac 1020 caaccaaggt tgagcgggaa ttggatcaag aagtggagcg ggcaacaacc ggaaggtaaa 1080 tttgyggttt tggatgagta cactctgctg actgaagtgc ctccagtatt tgcattgttc 1140 ggtgacccca tacaatcgaa cacaagcgcm gttcagcgtg ctgacttcgt gtgctcagtg 1200 agtagaagat ttggcagtgc cacgtgcgtg ctgttgcgag agttgggttg gaacgttcaa 1260 agtgagaagg ctgacctggt gcaagtatcc gatatataca caaaagaacc tctgggtaaa 1320 gttgtgtttt tcgaggagga agtgggttgc ttgctgagat cacacggggt ggaagcgttg 1380 agcttgcagg agataacagg ccaaactttt gaagtgstaa sgttcgtgac ttcagagaat 1440 tctccagtga tcaatcgagc ggctgcctat cagtgcatga caaggcatcg atcagctcta 1500 cacatcttgt gtcctgatgc cacttacacc gccgcctgac tttacaaagg tgtacctttc 1560 tgctgcactc ggagtgtcac ttgctctagt tgtttggttg cttacaagga gtacactacc 1620 tgtggtgggg gatagagatc acaatttacc acacggaggt tggtacaggg acgggaccaa 1680 atcagtgttt tacaacagtc ccggtcggct caattcaata gaagctagga aagctccgct 1740 acttggtcaa ccttgggcta tagttgtgct gctagtactg ctcatctggg cgagccacaa 1800 actcgggagg cctaactgta gagtttgtgg cggctcacac acatgatagt gtatgctctt 1860 gtgggactgt gcgcctttag cattgtgctg tatttggtct ctcagggcca gtctgactgc 1920 gtggtgctaa ttaccggcga atcagtgcgc gtgcaagggt gccaaattaa crgtgagttc 1980 ggtagcgtgc tatcaaaatt gaagccgttt gggtgtggtt cctttaggtc ataaggtgaa 2040 tctgaaatag tgagtatggg agattcaacg aagaaagctg aaactgccaa agatgcgagc 2100 accttgcaag agaagagaga agcgcgacca ctgccaactg ctgctgactt cgaggggaag 2160 gacacatcgg agagcactga tgggcgagcy gccgatgttg atggagagat gtcattggaa 2220 cggaggctta acagcctccg agaattcctg cgagagcgga ggggcgcaat tcgagtgaca 2280 aacccggggt tagagactgg caggccaagg ttgcagctag ctgaagatat gcgccctgat 2340 cccacgaatc cgtacaacrg gccgtccata gaagctctca gccggatcaa gccaatcgcg 2400 atctcgaaca acatggccac atctgaggac atgatgcgca tatatgtgaa cctggagggg 2460 ctaggtgtgc cgactgagca cgtgcagcag gtggtaattc aggctgtgct attttgcaag 2520 gacgcaagta gctccgtatt cctggacccg cgaggttcgt tcgagtggcc cagaggtgct 2580 ataactgcag acgccgtctt ggctgtgctg aagaaggacg cagaaactct acgaagggtg 2640 tgtaggctgt atgccccagt gacatggaat catatgctaa cgcacaacgc gcctccagcc 2700 gactgggctg ccatggggtt tcrgtacgaa gatcgcttcg ctgctttcga ctgctttgac 2760 tacgttgaga atactgctgc agttcaaccc ctagagggat tgatcaggcg acctacccca 2820 agggaaaaga tagctcacaa tacgcacaaa gacatcgcgc tgcgtggagc aaatcgcaat 2880 caggtgttca gctctctcaa taccgaggtc actggaggta tgaatggtcc ggagctcact 2940 agggattatg gcaaatcgaa tagaaaatga agcacgtaac cagggtggct ttacttatag 3000 cgagagctat gtgtacttct tcaggtactt ttgtgttcga actagctttt agtatagctg 3060 agtgtgcggg tcgaccactt ggtggtggga gatccaagta cgcacgtcgt agacgtgcta 3120 ttagcatagc taggtgtcac aggtgctatc gcctgtggcc cccaactgtg tttactacta 3180 ggtgtgataa taaacattgt gtacctggta tctcttacaa tgtgcgcgta gcgcaattta 3240 ttgatgaagg agtaactgag gtgatacctt cagtcatcaa caagcaagag tagccattaa 3300 atcctattta atatataatg tgtgctacta taaataaaat 3340 //