Dbfetch
ID HM989935; SV 1; linear; genomic RNA; STD; VRL; 2057 BP. XX AC HM989935; XX DT 15-MAR-2011 (Rel. 108, Created) DT 28-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Scophthalmus maximus reovirus segment M6, complete sequence. XX KW . XX OS Scophthalmus maximus reovirus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Aquareovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2057 RX DOI; 10.1186/1471-2164-12-323. RX PUBMED; 21689389. RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT "Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG RT start site"; RL BMC Genomics 12(1):323-323(2011). XX RN [2] RP 1-2057 RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT ; RL Submitted (26-JUL-2010) to the INSDC. RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of RL Hydrobiology, Chinese Academy of sciences, Donghu South Road #7, Wuhan, RL Hubei 430072, China XX DR MD5; a74d1bffe898f8f4c7d71727a6c41a37. XX CC GenBank Accession Numbers HM989930-HM989940 represent the complete CC genome of Scophthalmus maximus reovirus. XX FH Key Location/Qualifiers FH FT source 1..2057 FT /organism="Scophthalmus maximus reovirus" FT /segment="M6" FT /host="Scophthalmus maximus (turbot)" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Jun-2007" FT /note="acronym: SMReV" FT /db_xref="taxon:994485" FT CDS 29..1990 FT /codon_start=1 FT /product="VP5" FT /note="outer capsid" FT /db_xref="GOA:F2WJL1" FT /db_xref="InterPro:IPR009113" FT /db_xref="InterPro:IPR015960" FT /db_xref="InterPro:IPR015962" FT /db_xref="InterPro:IPR036256" FT /db_xref="UniProtKB/TrEMBL:F2WJL1" FT /protein_id="ADZ31981.1" FT /translation="MGNVQTSTNVYNVNGDNNAFTPTSEMVASASPAIDLKPGVLNPNG FT KLYQLEAGSAPDPTNLILVVDASEGDFSYLTNNTWETLSKSALETNSWEPMFSVTMTGC FT GPLKLGDYTVTMSGYVGASPSDAFDGGVIEDGSFISSRRLKNFKLMLSNRCEAIAKWNM FT SLNQAMSLLTPDLLAGSGSCKWKSVLQYMQKVLPSDNEVLQYPDEFYTVAVGKYPALKP FT GSSPDTPPPAAGPLGEIACVMNAASASVGLMSGSSALLTSAMDTLAAKNLDLVCAEAPL FT PVSTFTPSLAPRDYRPAFIKDADAHWVTSITPTTYFRVTTTLSAKNYSVQLGPGATKVL FT DMNRMVDSDLLLDVSGMPIDWMSNPDYATSVAAIVLLESRVPASEISAAEDITGVSIVA FT SSPLSIVNSTVNVRGQHFLEMLHLRTTFERETIAGKPYIYGLGTLLLLSPTTASNSRNP FT TLMDGLLTITPILLRDTTYKGEIVEEIVPSDILGNHTSEEMAVALANDAVVLMENSLKE FT VAEVIGNAVPIASDLDDSATASVVSRLAITETASTRSRSNNPLAFPDFGALWKKAKRAA FT SLFVSNPKSVLQVGVPVLASAGVIDALTSAVGTSVRTGNIGKGVQDALSILKARNSVTK FT LRQGFFSKIEELWPVLEG" XX SQ Sequence 2057 BP; 462 A; 629 C; 501 G; 465 T; 0 other; gttttatctc cttgcgccct tctcaatcat gggaaacgtc caaacctcaa ctaacgtcta 60 caacgtaaac ggcgataaca atgctttcac accaacttcc gagatggtgg cgtcagcttc 120 gcccgctatt gacctcaaac ccggcgtgct caatcccaat ggcaagctct atcaacttga 180 ggctggctca gctccagatc ctaccaactt aattttggtg gtcgacgcat cagagggtga 240 cttctcgtac ctcaccaaca acacatggga gacactcagc aaatcggctt tggagaccaa 300 ctcctgggaa ccaatgttca gcgtgacgat gaccggttgc ggtccgctca aattgggtga 360 ctacactgtg acgatgtccg gctacgtcgg tgcctctcca agtgacgcct tcgatggtgg 420 tgtgatcgaa gatggctcat tcatttccag tcgaagactg aagaacttca agctgatgct 480 ctccaacagg tgtgaagcca tcgcaaagtg gaacatgtcc ttgaatcaag ccatgtcact 540 actgactccc gacctgcttg ctggatctgg ttcctgtaag tggaaatccg tcttgcagta 600 catgcagaaa gtgcttccct ctgacaacga ggtgcttcag tacccagatg agttctacac 660 cgtggcagtc ggcaagtacc ccgcgctcaa gcccggatcc tcgcccgata ctcccccacc 720 tgctgcagga ccccttggcg agatagcatg tgtcatgaac gcagccagcg cctccgttgg 780 tctcatgagt ggatcaagcg cactcctcac ctccgccatg gacaccctgg ctgcaaagaa 840 tctggatctt gtatgcgctg aagccccgct gcctgtctcc accttcaccc cttcgctagc 900 gccacgggac tacaggcctg ccttcatcaa agatgcggat gcccattggg tcacgtccat 960 aaccccgacg acgtactttc gcgtgacgac caccctgtcc gccaaaaact actcggtcca 1020 gctcggccca ggcgcgacta aagttttgga catgaatcgc atggtcgact cagatctcct 1080 gctcgatgtc agtggcatgc ccattgattg gatgtctaat cccgactacg ccacctcggt 1140 cgccgccatc gtcctgttgg agtcacgcgt tccagcttca gagatctccg ccgctgagga 1200 catcactggc gtttccatcg tggcaagctc gccgctttca atcgtcaatt cgaccgtgaa 1260 cgtgcgggga caacacttcc tggagatgct ccacttaagg accactttcg aacgtgaaac 1320 catcgccgga aagccataca tctatggtct cgggactctg ttgctgctgt cccccaccac 1380 cgcgtcaaac tcacggaacc ccactctgat ggatggtctg ctaaccatca ctccaatcct 1440 cctgcgtgac acgacctaca agggcgaaat cgtcgaggag atcgtgccct ccgacattct 1500 cggcaaccac acttcagaag aaatggctgt agcgttagca aacgatgctg tcgttctgat 1560 ggagaatagc ttgaaggaag tggctgaagt gatcggaaac gccgtcccca tcgcttccga 1620 tcttgatgac agtgccaccg catcggtcgt aagtcgtctg gccatcaccg agaccgcctc 1680 tacgcgctca cgatccaaca atcccctcgc attcccagat ttcggagctc tctggaagaa 1740 agccaagcgc gccgcctcac tgttcgtctc taatccgaaa tctgtactcc aagtcggtgt 1800 cccagttctc gcatccgccg gggtgatcga tgcactcacg tcagccgttg gcacatctgt 1860 caggacgggc aacattggaa aaggtgtcca agatgctcta tctattctta aagcacgaaa 1920 tagtgtgacg aagttgaggc aggggttctt ctcaaagatt gaggagcttt ggccagtact 1980 cgaaggctag acgtgtggct tgtccacgtc gcgccctaga gccctcgggt gacgccgagg 2040 ggggatatcc attcatc 2057 //