ID HM989933; SV 1; linear; genomic RNA; STD; VRL; 2640 BP. XX AC HM989933; XX DT 15-MAR-2011 (Rel. 108, Created) DT 28-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Scophthalmus maximus reovirus segment M4, complete sequence. XX KW . XX OS Scophthalmus maximus reovirus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Aquareovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2640 RX DOI; 10.1186/1471-2164-12-323. RX PUBMED; 21689389. RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT "Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG RT start site"; RL BMC Genomics 12(1):323-323(2011). XX RN [2] RP 1-2640 RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT ; RL Submitted (26-JUL-2010) to the INSDC. RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of RL Hydrobiology, Chinese Academy of sciences, Donghu South Road #7, Wuhan, RL Hubei 430072, China XX DR MD5; 69443ad6386b89784abc715e87e08208. XX CC GenBank Accession Numbers HM989930-HM989940 represent the complete CC genome of Scophthalmus maximus reovirus. XX FH Key Location/Qualifiers FH FT source 1..2640 FT /organism="Scophthalmus maximus reovirus" FT /segment="M4" FT /host="Scophthalmus maximus (turbot)" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Jun-2007" FT /note="acronym: SMReV" FT /db_xref="taxon:994485" FT CDS 25..2478 FT /codon_start=1 FT /product="NS88" FT /note="nonstructural protein; involved in the formation of FT viral inclusion bodies with NS38" FT /db_xref="UniProtKB/TrEMBL:F2WJK9" FT /protein_id="ADZ31979.1" FT /translation="MAARINLRMLSADSSLTTNKPSTPSHPPSDNPSTSAAAGFQSLPN FT LSFRSPPTWSLTYKGVAFHGVCDPPCEPFIPIAGYLSQMISHMTPSSEPHRIEDVNNLV FT AVGLSQLGVTPSMSLGEVEVLLNDRVARVHDGSGPFFDPVPAPVPAPLSPVPAATVSPP FT PPAPPASLAPAVTSLNPALAAAPTLKPSSVPTGTQTLLMPLQLTAATSTATPTASPTVT FT DALSTTRADCGPTSVNEPSTLWSESALDEFDGPAHCSLATNPPLIDGRLYSQVVQPPVK FT PVDQFIVCDSRRVSIGSTSKASSVASETPALMELNVTPASTGPRRPPRPAPGPFPPRTG FT RRRAHHIADDNTYNEARLAYARGRPTTSPLYNQGLEIHSERAFFSSFPHHINGKWVAPT FT SVLNVVAGADEDLNDSTIHSVRATDCSGMYEVTATNGEVISRLNVMFIDSDTTSQALTH FT FITPHSLIAITPYAAALMVQFRLTKGVFSKSHRRMVMGIDPVMIHLNSRGVALWNVLTQ FT HLLEYAELYASASLRDLVTALLDPVNVTTMRWMKRTLPNCVAAVCEMRTDPIPTLSHIL FT NVETPTTPVSSAASSLKLSELQAENTALTSQISTLEAQLEAATLSLATTRESIQREQAV FT HSADSLKQYLHDHVCVNCHEEPFLNATVGVEAAGQILSARQNARERAADKVRQAVSAGF FT AETVTMLQERNLSLDQRVKATVDELNATATQLRSALSRLSSAEGRSHDLVQRNELLESQ FT LVEARQLSSYQDSHQKETITALQTTIRDSLPYTPVHYGQGQFTMPSLPPVRSMMPDFDP FT SDLLM" XX SQ Sequence 2640 BP; 498 A; 979 C; 540 G; 623 T; 0 other; gttttaagtg aactgctcga gaagatggcc gcccgcatca acctccgaat gctcagtgcc 60 gactctagtc ttactacaaa caaaccgtct accccttccc atcctccttc cgacaaccca 120 tccacctccg ccgcagccgg cttccagtcc ctgcctaacc tgtccttccg ttccccaccc 180 acctggtccc tcacctacaa aggtgttgct ttccatggcg tctgtgaccc tccttgcgag 240 cctttcatcc ccattgctgg ctaccttagt cagatgatat cgcacatgac cccttcctcc 300 gaaccccatc gcatcgagga tgtcaacaac ctggttgccg ttggtctttc ccagctcggt 360 gtaacaccca gcatgtctct cggcgaagtg gaagtccttc tgaatgatcg tgtggctcgt 420 gtccatgacg gatctggccc tttcttcgac cctgtccccg ctccggttcc tgctcctctc 480 tcccctgttc cagccgctac tgtctctcct cccccacccg cacctcccgc atctctggct 540 ccggccgtca cctcccttaa cccggctctc gccgcagccc ccaccctcaa gccctcctct 600 gtcccgactg gcacccagac cctcctcatg ccactccaac tgaccgctgc cacctctacc 660 gctacaccga ctgcctcccc tactgtgacc gacgctctct ccaccacccg tgctgactgt 720 ggcccgacat ccgtgaacga accctccacc ctgtggtccg aatctgctct ggatgaattt 780 gatggccctg ctcactgttc tctcgctacc aatccacctc tgattgatgg ccgcctgtac 840 tcccaagtcg ttcagccccc cgtcaagccc gtcgaccagt tcatcgtgtg tgactcacgt 900 cgtgtgtcca ttggttccac ctccaaggct tcctctgtcg ctagcgagac cccggcattg 960 atggagctta atgtcacccc agcttcgact ggtccccgtc gtcctcctcg ccctgccccc 1020 ggccccttcc cacctcggac tggtagacgt agggcccacc atatcgctga cgacaacacg 1080 tacaatgagg cacgtttggc ttacgctcgc ggtcgaccca ctacttcccc tctgtacaac 1140 caaggtttgg agattcactc cgagcgcgct ttcttctcct ccttccctca ccacatcaac 1200 ggcaaatggg ttgctcctac atctgtgctc aacgtcgttg ctggtgctga tgaggatctg 1260 aatgactcca ccatccactc cgtccgcgcc accgactgta gtggtatgta cgaggtcacc 1320 gcgaccaacg gcgaagtcat ctcccgactg aacgtcatgt tcatcgacag tgacaccacc 1380 tcacaggctc tgactcactt catcaccccg cattcactca ttgctattac tccttatgcc 1440 gccgccctca tggtccagtt tagactcacc aaaggcgtct tctccaagtc acaccgacgt 1500 atggtcatgg ggattgatcc agtgatgatc cacctgaact cgcgtggagt tgctctctgg 1560 aacgtcctta ctcagcatct gctggagtac gccgagctat acgcctctgc cagtctgagg 1620 gatcttgtca ccgccctgct cgaccctgtg aatgtcacca ccatgcgatg gatgaagcgc 1680 acgcttccca attgtgtcgc agccgtgtgc gagatgcgta ccgatcccat ccccaccctg 1740 tcccacattc tgaacgtcga gacccccacc acgcctgttt ccagtgccgc cagcagcctc 1800 aagttgtccg aacttcaagc cgagaatacc gctctgacat cccagatctc aaccttggag 1860 gcccaacttg aggcagctac cctctctctc gccaccaccc gcgaatccat ccaacgtgag 1920 caggcggtgc attcagccga ctccctaaag cagtacctcc atgaccacgt ctgtgtgaac 1980 tgtcatgagg aaccattcct taacgcgacc gttggcgtcg aagccgctgg ccagattctc 2040 tctgcccgtc agaatgcccg agagcgtgcc gctgataaag ttcgtcaggc tgtcagtgct 2100 ggtttcgccg agactgtcac catgcttcaa gagcgtaatc tttccctgga tcaacgtgtc 2160 aaagccaccg tagacgaatt gaatgccacc gccacacaac tccgatctgc acttagccgt 2220 ttgtcgtccg cagagggccg ttcccatgac ttggttcaga gaaatgagct gcttgaatcc 2280 caactcgtcg aagcccgcca gctctcatcc tatcaagaca gccaccagaa ggagaccatc 2340 accgctctcc agactactat tcgagacagc ttaccttaca ccccagtcca ctatggacaa 2400 ggccaattca ctatgccctc ccttccaccc gtccggtcca tgatgcctga cttcgacccg 2460 tcagaccttc tcatgtagtc acttactcgt tatcgacctc acgctctgcc tcccgaccat 2520 gatttaagcg cgccgatccc cacccgcccg tattcacccc attccctttt cccaggctaa 2580 gtccactggc cttctctggt tgttgccgac cctctcttcc gatgcttcac tctattcatc 2640 //