ID HM989931; SV 1; linear; genomic RNA; STD; VRL; 3866 BP. XX AC HM989931; XX DT 15-MAR-2011 (Rel. 108, Created) DT 28-JUN-2011 (Rel. 109, Last updated, Version 2) XX DE Scophthalmus maximus reovirus segment L2, complete sequence. XX KW . XX OS Scophthalmus maximus reovirus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Aquareovirus. XX RN [1] RC Publication Status: Online-Only RP 1-3866 RX DOI; 10.1186/1471-2164-12-323. RX PUBMED; 21689389. RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT "Turbot reovirus (SMReV) genome encoding a FAST protein with a non-AUG RT start site"; RL BMC Genomics 12(1):323-323(2011). XX RN [2] RP 1-3866 RA Ke F., He L.B., Pei C., Zhang Q.Y.; RT ; RL Submitted (26-JUL-2010) to the INSDC. RL State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of RL Hydrobiology, Chinese Academy of sciences, Donghu South Road #7, Wuhan, RL Hubei 430072, China XX DR MD5; 9857e1e246238e22c4a18ecc3b65407f. DR EuropePMC; PMC4284399; 25348270. XX CC GenBank Accession Numbers HM989930-HM989940 represent the complete CC genome of Scophthalmus maximus reovirus. XX FH Key Location/Qualifiers FH FT source 1..3866 FT /organism="Scophthalmus maximus reovirus" FT /segment="L2" FT /host="Scophthalmus maximus (turbot)" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Jun-2007" FT /note="acronym: SMReV" FT /db_xref="taxon:994485" FT CDS 13..3837 FT /codon_start=1 FT /product="VP2" FT /note="core protein; polymerase" FT /db_xref="GOA:F2WJK7" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR012915" FT /db_xref="UniProtKB/TrEMBL:F2WJK7" FT /protein_id="ADZ31977.1" FT /translation="MSALFNALPPELQQLSLALSGSQPLTDKTFTAAADAWHIRPRSQA FT YHLLDTLTFRSSVVIPNSIFVGRVWSDYWALQDNIVIRISPEGAKDADYCHNSNIAPVL FT SPLKKIPEYGTLHPTIDKDASERGYPSARMASSFFKLASSQARQVKIDPTRFLEFLLVV FT NATTRVPSGVDSDQPNPWLPESSPALQAIWQIMQRYKVDSKYYAPALVVNTGAVWWIPP FT PGRTNCVTVQFLITDLINLAVNAFATRLSPELEMCAVRVYLAAAATPNYAHALLDLKAI FT FPNLSLHSMDRSGEFGGKCPRIEWTEPRSSYRFKWGGVTQLHEGLRPLTPSRDEKAMEK FT MRAYGLSDVAQVIIRMRQSHPRHNADSVRFVRDVLSLTSGMYLVRPPTMSVLREYSQTP FT QIEEPIPPDWWTGAVGSLAYFNERAKGPLSHLYSVWLEAARKVVMDPSTHDPLTQAIYK FT TQFVTPRGGSSAALKQALAESKVELPDFTSTGVKRSSKIYQTAQLAHLSFQALIPAIMG FT QVTLGIRNQVQRRARSIMPMSNPQQTVSVPHTLVANYINKHMNRSTTSGSAVQDKVIPL FT LLYASTPPRTVINVDIKACDASITYAAFLAPICGAMHQGFDLGDPSAPFMNVPSSTQYD FT RRNPEAPYNRPVSGLQTMTQHLAKLYQAGFSYKVDDPFSSGNSFVFPTTTFPSGSTATS FT TEHTANNGAMADYFLREYVPQHATSSTLKFIVKDMTIQNNYVCQGDDGMLILPDLGTKR FT VSPDDLAELMSLLEKYGRGFGWVYDIDSSDSAEYLKLYALFGARIPNISRHPPVGKEYA FT SPETGEIWPSLVNIAMGSFYNGVTDCLEWRDWLRFSWAFACFASRGSFHPKIGPRVDAQ FT YPVWSFIYMGLPPILLPGQTPFLTSVYMPAGDQGIFAILHQWRDYLTARATAEYPPLTR FT RHPVWQLADVPSLLADLGVYRGYWAAQVSRRPEPSPDDADPTNVEAMSAALSTYLLKDP FT VLRDRVVRGTNAWRRLTDSQPGRLPSRVPSLLDVPTRWIKAGRDAEKPRPSAVAMMMKD FT IQRAASSSRKDFSRLLELYLHVHVHLGPPVPLAVDPEVPHVAGADILNDDHWYKVTSLG FT PIAQSTKKCFDATLFVGKTVSGLDVEAVDATLLRLSILGAEPEEYHAFLAGIGMSDAEA FT HRIASAISLADAQIVQLARTVNLAVPSSWMSLDFDTLIRSHSYPRQPGISDSSTLVRER FT ASWINSVLRLLCATVAMTRVGPVCQATVASVDGGVNQIVGCLRAWMRDV" XX SQ Sequence 3866 BP; 812 A; 1266 C; 855 G; 933 T; 0 other; gttttatcca ctatgtccgc gttgttcaac gcgctgccac ccgagctcca gcaactttca 60 ctcgcactat ctggttccca accactcacc gacaaaacct ttaccgctgc cgctgatgcc 120 tggcatatcc gcccccgatc ccaagcctac cacctactcg ataccctcac atttcgatcc 180 tccgtggtta tccctaactc tatcttcgtc ggtcgagtct ggtcggatta ttgggcctta 240 caggacaaca tcgtcatccg aatcagcccg gaaggtgcga aagacgccga ctattgccac 300 aattcgaaca tcgcacctgt cctgtcgcct cttaagaaga ttccggaata tggtacgctc 360 catccgacga ttgacaagga tgcatctgaa cgcggttacc cttcagcccg catggcgtct 420 tccttcttta agctcgcctc ctcccaagcc agacaagtaa agatcgatcc aactaggttt 480 cttgagttcc ttctcgtcgt caacgccacc acgcgagtcc cttcgggtgt cgactcagac 540 cagcctaatc catggttacc cgaatccagt cccgcgcttc aagcgatttg gcagattatg 600 caacgctaca aggtagactc caagtactac gctcccgccc tcgttgtgaa caccggagcc 660 gtttggtgga ttccgccccc aggtcgcacc aattgcgtaa ctgtgcagtt cctcatcact 720 gatctgatta atctagccgt gaacgctttc gccactcggt tatcccctga gcttgagatg 780 tgtgctgtta gagtctacct tgccgcggcg gctacgccca attacgctca cgccctcctc 840 gatctgaagg caatcttccc caatctcagc ctccacagca tggaccgcag tggtgaattc 900 ggtggtaagt gccctcgcat tgaatggact gaaccgcgtt catcgtatcg attcaaatgg 960 ggtggtgtca cgcaacttca cgagggacta cgccccctga ccccgtcacg cgacgagaaa 1020 gctatggaaa agatgcgcgc gtatggctta agcgacgtcg cccaagtgat catccgaatg 1080 cgtcaatccc acccccgtca caacgccgat tcagtgcggt tcgtccgtga tgtactcagc 1140 ctcacaagtg gcatgtacct tgttcgacct ccaaccatgt ccgtcctccg agagtactcc 1200 caaacccccc agattgaaga acccatcccc cctgactggt ggactggagc tgttggttca 1260 cttgcttact tcaacgaacg cgccaaagga ccactctctc atctctactc cgtgtggctg 1320 gaagctgccc gtaaggtcgt tatggatccc tcgacgcatg accctctgac acaagccatc 1380 tacaagactc aatttgttac ccctcgcgga ggctccagcg ccgccctcaa gcaagcccta 1440 gccgagagca aagttgagtt gcccgacttc accagtactg gcgtcaaacg atcctctaag 1500 atttaccaga ccgcccaact tgcccatctc agcttccaag ctctcattcc agccattatg 1560 ggtcaagtca ctctcggaat taggaatcaa gtgcaacgtc gcgcccggtc catcatgcct 1620 atgagtaacc cccagcaaac tgtctcggtt ccacacactt tggtggctaa ttacatcaac 1680 aaacacatga accgatcaac cacttctggt agcgccgttc aggataaagt catccctctc 1740 ctcttgtacg cttcgacccc accgaggact gtcatcaatg tcgacatcaa ggcctgcgac 1800 gcgtcgatca catacgcggc cttcctcgcc ccgatctgtg gcgccatgca tcaaggcttc 1860 gacctcggtg acccatccgc tccgttcatg aacgttccct cgtccaccca gtacgaccgt 1920 cgcaatcctg aggccccata caatcgtcct gtttccggtc tccagacaat gacccagcac 1980 ctcgcgaaac tttaccaagc tggcttctcc tacaaggtcg atgacccctt ctccagtggc 2040 aacagcttcg tcttccctac caccaccttc ccctcaggtt ccactgctac atctaccgag 2100 catactgcaa acaatggagc tatggccgac tactttctcc gcgagtacgt tccgcaacac 2160 gccacctcca gcactctgaa attcatcgtt aaagacatga ccattcagaa caactatgtc 2220 tgccaaggtg atgacggaat gttgatcctt ccagatctcg gcactaagag agtctcccct 2280 gatgacctgg ccgagttgat gtcattgtta gagaagtacg gacgcggttt cggctgggtt 2340 tacgacattg acagttccga ttcagctgaa tatctgaagt tgtacgccct gttcggtgca 2400 cgtatcccca acatcagtcg ccatcccccc gttggcaaag agtacgcttc ccctgaaact 2460 ggtgagatct ggccatccct cgtgaacatc gccatgggct ccttctacaa cggcgtcact 2520 gactgcctcg aatggcgtga ttggttaagg ttcagttggg cattcgcatg tttcgcctcc 2580 cgtggttcct tccatccgaa gattggtcct cgtgtcgacg cgcagtaccc cgtgtggtcc 2640 ttcatttaca tgggcttacc tccaatcctc cttcctggcc agaccccgtt ccttacctcg 2700 gtatacatgc ctgcgggaga ccaaggtatt tttgccatct tacaccagtg gcgcgactat 2760 ttaaccgccc gggccactgc cgaatatcca ccactcacgc gccgccaccc cgtctggcag 2820 ttggccgacg ttccctctct tctagctgac cttggcgttt accgtggcta ctgggctgct 2880 caggtctccc gccgacccga accctcacct gatgacgccg acccgaccaa cgtggaagcg 2940 atgagtgcag ctctctccac ttaccttctc aaagatccag tgctccgcga ccgagttgtt 3000 cgtggtacta acgcatggcg gcgtctcacc gattcccaac ccggtcgctt accttctcgc 3060 gtgccctccc tacttgatgt ccccactcgt tggattaaag ctggacgtga cgctgaaaaa 3120 cccagaccct cggctgttgc catgatgatg aaggacattc aacgcgctgc tagctcttca 3180 cgcaaggact tctctcgtct tcttgaactg tacctgcacg tccatgtcca ccttggacca 3240 cccgtacccc tcgctgttga tcccgaagta cctcatgttg ctggtgctga cattcttaac 3300 gacgaccact ggtataaagt gacctccctc ggtcccatcg ctcaatccac caagaagtgt 3360 ttcgacgcta cccttttcgt cggaaagact gtttcaggac tagacgttga agccgtcgac 3420 gcaaccttac tccgtctctc tattcttggc gctgaacctg aagagtacca cgctttctta 3480 gctggcattg gcatgtctga cgctgaagct catcgcattg ctagcgccat ctctcttgca 3540 gacgctcaga ttgtccaact cgcccgaacc gttaatctgg ccgtcccctc atcctggatg 3600 tcactagatt tcgacaccct aatcagatca cactcatacc cacgtcagcc cggtatcagc 3660 gactcctcta ctctcgtcag ggaacgcgcg tcctggataa attcggtcct tcgactctta 3720 tgcgccactg tcgccatgac tcgagttgga cctgtatgcc aagcgactgt tgcaagtgtt 3780 gatggtggtg tgaaccaaat cgtcgggtgt ttgcgtgcct ggatgcggga tgtgtgagcc 3840 gtgcggcggg cagtggtaca atcatc 3866 //