ID HM859902; SV 1; circular; genomic DNA; STD; VRL; 2609 BP. XX AC HM859902; XX DT 22-MAY-2011 (Rel. 108, Created) DT 22-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Whitefly VEM 1 begomovirus, complete genome. XX KW . XX OS Whitefly VEM 1 begomovirus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2609 RX DOI; 10.1371/journal.pone.0019050. RX PUBMED; 21544196. RA Ng T.F., Duffy S., Polston J.E., Bixby E., Vallad G.E., Breitbart M.; RT "Exploring the diversity of plant DNA viruses and their satellites using RT vector-enabled metagenomics on whiteflies"; RL PLoS One 6(4):E19050-E19050(2011). XX RN [2] RP 1-2609 RA Ng F.F., Bixby E., Vallad G., Duffy S., Polston J.E., Breitbart M.; RT ; RL Submitted (25-JUL-2010) to the INSDC. RL University of South Florida, 140 7th Ave S, Saint Petersburg, FL 33701, USA XX DR MD5; 547d7d701a67f2c232823749ef1ecd8c. DR EuropePMC; PMC3081322; 21544196. XX FH Key Location/Qualifiers FH FT source 1..2609 FT /organism="Whitefly VEM 1 begomovirus" FT /host="whitefly/plant" FT /mol_type="genomic DNA" FT /country="USA:Florida, Homestead" FT /collection_date="Apr-2009" FT /note="acronym: WfVEM1BV" FT /db_xref="taxon:1032481" FT stem_loop join(2589..2609,1..13) FT /note="contains nonanucleotide sequence" FT gene 183..938 FT /gene="CP/AV1" FT CDS 183..938 FT /codon_start=1 FT /gene="CP/AV1" FT /product="capsid protein" FT /db_xref="GOA:F6KD49" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:F6KD49" FT /protein_id="AEF12633.1" FT /translation="MTKRDSSWRSIAGTSKVRRTLNFSPRGGGGPKQTRASEWVNRPMY FT RKPLIYRTLRTSDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATI FT KNDLRDRYQVMHRLYGKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(516..791) FT /gene="AC5" FT CDS complement(516..791) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="UniProtKB/TrEMBL:F6KD50" FT /protein_id="AEF12634.1" FT /translation="MIVDLPESPNQRLLVAGILTTCDLAIEPVHNLITIAEIVLNRGGA FT RLVVIHVEHLAKIHWGAIGSSVSDQPEHDTVRMVLELYVLIHPYLP" FT gene complement(935..1333) FT /gene="REn/AC3" FT CDS complement(935..1333) FT /codon_start=1 FT /gene="REn/AC3" FT /product="replication enhancer" FT /db_xref="GOA:F6KD51" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6KD51" FT /protein_id="AEF12635.1" FT /translation="MDSRTGELITARQAENGVYIWEIENPLYFKIYRVEELLYARTRVY FT HIQIRFNHNLRRVLGLHKAYLNFQVWTTSMTASGLTYLVRFRQLVNMYLDDLGVISINN FT VIRAVQFATDTAYVKYVLENHEIKFKFY" FT gene complement(1080..1469) FT /gene="TrAP/AC2" FT CDS complement(1080..1469) FT /codon_start=1 FT /gene="TrAP/AC2" FT /product="transcription activator and/or silencing FT suppressor" FT /db_xref="GOA:F6KD52" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6KD52" FT /protein_id="AEF12636.1" FT /translation="MLSSSPSQPPSIKKAHRQAKRRAIRRRRIDLECGCSIYFHIGCTG FT HGFTHRGTHHCTSGREWRIYLGDRKSPVFQDIQSRGTTIRQDQSVPHPDKVQPQPEESV FT GSPQSLPELPSLDDIDDSFWVNLFS" FT gene complement(1381..2466) FT /gene="Rep/AC1" FT CDS complement(1381..2466) FT /codon_start=1 FT /gene="Rep/AC1" FT /product="replication protein" FT /db_xref="GOA:F6KD53" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F6KD53" FT /protein_id="AEF12637.1" FT /translation="MPSVKRFKINAKNFFLTYADCSLSKEEALSQLQKLNTPVNQKFIK FT ICREFHKNGNPHLHVLIQFEGKYQCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT NKDGDTLEWGEFQIDGRSARGGCQTANDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANAQRIFSKAPEPWVPPFPLSSFTAVPDEMQEWSDSYFGRGAAARPERPVSLIVEG FT DSRTGKTMWARSLGPHNYLSGHLDFNARVFSNEVEYNVIDDVAPQYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLNKEENTGLRNWTIKNAIFITLT FT APLYQEGTQASQEEGNQETQD" FT gene complement(2052..2309) FT /gene="AC4" FT CDS complement(2052..2309) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:F6KD54" FT /protein_id="AEF12638.1" FT /translation="MGILISMCSYSSKENTSARITDSSIWSPQPGQHISIQTYRELNPA FT PTSSPTSTRTETHWNGGNSRSTGEVLEEAAKQLTTHMPRR" XX SQ Sequence 2609 BP; 626 A; 595 C; 618 G; 770 T; 0 other; accggatggc cgcgcgattt ttccgccctt tgctttccac gcgcgctccg cttttttcac 60 tcgcgctatc gtccaatcat agtgcgtctg ccgcgcctaa ttaattcaaa caacttgggc 120 cctaagttgt tgtctgggcc tataaaggaa aagcgggttt gggccacagt ctttaattca 180 aaatgactaa gcgcgattca tcttggcgct cgattgctgg aacctcaaag gttcgtcgca 240 cgttgaattt ctccccacgt ggaggtggtg gcccaaaaca gacacgggcc tcagaatggg 300 ttaacaggcc tatgtacagg aagcccttga tctatcggac tctaaggacg tcagacgttc 360 ccagaggttg cgaaggcccg tgtaaggtcc agtcctatga acagcgtcat gatatctccc 420 acgtcggcaa ggtgatgtgt atttctgatg tcactcgtgg taatggcatt acccaccgtg 480 tgggtaagcg tttttgtgtt aagtctgtgt atattttagg gaagatatgg atggatgaga 540 acataaagct caagaaccat acgaacagtg tcatgttctg gttggtcaga gacagacgac 600 cctatggcac cccaatggat tttggccagg tgttcaacat gtatgacaac gagcctagca 660 ccgccacgat taagaacgat ctccgcgatc gttatcaggt tatgcacagg ctctatggca 720 aggtcacagg tggtcaatat gccagcaacg agcaggcgtt ggttaggcga ttctggaagg 780 tcaacaatca tgtggtgtat aaccaccaag aggctgggaa atatgagaat cacactgaga 840 atgctttact attgtacatg gcatgtactc atgcctcaaa ccccgtgtat gcaacattga 900 aaattcgaat ctatttttat gattcgatta cgaattaata aaatttgaat tttatttcat 960 ggttttcaag tacatatttt acatacgctg tgtctgttgc gaactgaaca gctctaatta 1020 cattgttaat tgaaattacg cctaagtcgt ctaggtacat attgactaac tgcctaaacc 1080 taactaaata agttaaccca gaagctgtca tcgatgtcgt ccagacttgg aagttcaggt 1140 aggctttgtg gagacccaac actctcctca ggttgtggtt gaaccttatc tggatgtggt 1200 acactctggt cctggcgtat agtagttcct ctactctgta tatcttgaaa tacaggggat 1260 tttctatctc ccagatatat acgccattct ctgcctgacg tgcagtgatg agttcccctg 1320 tgcgtgaatc catgtcccgt gcagcctatg tggaagtata tggagcaccc gcactctaaa 1380 tcaatcctgc gtctcctgat tgccctcctc ttggcttgcc tgtgtgcctt cttgatagag 1440 gggggctgtg agggtgatga agatagcatt cttgatggtc cagttcctga gacctgtgtt 1500 ttcctctttg ttcaggaagt ctttatagct ggcaccctca ccaggattgc aaagcacgat 1560 tgatgggatt ccccctttaa tttgaactgg cttgccgtat ttgcaatttg actgccagtc 1620 cttctgggcc cctataagtt ctttccagtg ctttagcttt agatattgcg gtgcgacgtc 1680 atcaatgacg ttatactcca cttcatttga aaagacacgg gcattgaagt ctaggtggcc 1740 actgagatag ttatgtgggc ctaacgaacg agcccacatc gtcttccctg tcctcgagtc 1800 accttctact atgagactta ctggcctctc cggccgcgca gcggcacctc tcccaaaata 1860 actgtctgac cattcttgca tctcgtccgg aacggcagtg aaagaggaga ggggaaacgg 1920 aggtacccat ggttccggag ctttactgaa aatccgttga gcattggcaa ccaaattgtg 1980 atgctgaagg aagaaatgtt gaggctgttc ctccttgatt atttgcagag cctcttctgc 2040 agaagaggca tttaacgcct tggcatatgt gtcgttagct gtttggcagc ctcctctagc 2100 acttctcccg tcgatctgga attcccccca ttccagtgtg tctccgtcct tgttgatgta 2160 ggacttgacg tcggagctgg atttagctcc ctgtatgttt ggatggaaat gtgctgacct 2220 ggttggggag accagatcga agaatctgtt attcgtgcac tggtattttc cttcgaactg 2280 tatgagcaca tggagatgag gattcccatt cttgtgaaat tccctgcaga ttttgatgaa 2340 cttttgattg actggcgtat taagtttttg taactgtgat agtgcctcct ctttgctcag 2400 ggagcaatct gcataagtga ggaaaaagtt tttggcattt attttgaaac gtttaactga 2460 tggcattttt gtaataataa gggtgtaccc cgattgagct ctctcaaact tgctcaatga 2520 atcggtgtaa tggtgtacaa tttatactag aaccctcaat agaactttca atctcgtgca 2580 cacacgtggc ggccatccgc tataatatt 2609 //