ID   HM856626; SV 1; linear; genomic DNA; STD; VRL; 831 BP.
XX
AC   HM856626;
XX
DT   09-NOV-2010 (Rel. 106, Created)
DT   09-NOV-2010 (Rel. 106, Last updated, Version 1)
XX
DE   Tobacco curly shoot virus isolate SILIGURI-1 coat protein (AV1) gene,
DE   partial cds; replication enhancer protein (AC3) gene, complete cds; and
DE   transcription activator protein (AC2) gene, partial cds.
XX
KW   .
XX
OS   Tobacco curly shoot virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-831
RA   Saha A., Saha B., Saha D.;
RT   "Geminiviruses infecting cultivated tomato plants of sub-Himalayan plains
RT   of Eastern India: occurrence, detection, host range and diversity
RT   analysis";
RL   Unpublished.
XX
RN   [2]
RP   1-831
RA   Saha A., Saha B., Saha D.;
RT   ;
RL   Submitted (27-JUL-2010) to the INSDC.
RL   Department of Botany, University of North Bengal, Siliguri, West Bengal
RL   734013, India
XX
DR   MD5; 3537c45751f74b1f6d8ca21127f5ec56.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..831
FT                   /organism="Tobacco curly shoot virus"
FT                   /segment="DNA-A"
FT                   /host="Lycopersicon esculentum"
FT                   /isolate="SILIGURI-1"
FT                   /mol_type="genomic DNA"
FT                   /country="India:West Bengal"
FT                   /collection_date="15-Dec-2009"
FT                   /PCR_primers="fwd_seq: acnggnaaracnatgtgggc, rev_seq:
FT                   ggnaarathtggatgga"
FT                   /db_xref="taxon:180526"
FT   gene            <1..375
FT                   /gene="AV1"
FT   CDS             <1..375
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /note="structural protein"
FT                   /db_xref="GOA:E5GED3"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:E5GED3"
FT                   /protein_id="ADP68718.1"
FT                   /translation="NSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQ
FT                   VLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHA
FT                   SNPVYATLKIRIYFYDSVTN"
FT   gene            complement(372..776)
FT                   /gene="AC3"
FT   CDS             complement(372..776)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /db_xref="GOA:E5GED4"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:E5GED4"
FT                   /protein_id="ADP68719.1"
FT                   /translation="MDSRTGELITAAQAENGVYIWEIQNPLYFKITEHQNRPFLMKEDI
FT                   ITIQIQFNYNLRKALGVHKCFLVYRIWMTSQPQTGRFLRVFKTQVFKYLNNLGIISINN
FT                   VIRAVDRVLWDVLEHIVYVDQSYSIKFNIY"
FT   gene            complement(517..>831)
FT                   /gene="AC2"
FT   CDS             complement(517..>831)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transcription activator protein"
FT                   /db_xref="GOA:E5GED5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:E5GED5"
FT                   /protein_id="ADP68720.1"
FT                   /translation="RVDLPCGCSYFIALACHDHGFTHRGTHHCSSSREWRVYLGDSKSP
FT                   LFQDNRAPEPSISHERRHNHNPNTVQLQPAESSGSAQVFSSLPNLDDFTASDWSFLKGL
FT                   "
XX
SQ   Sequence 831 BP; 254 A; 139 C; 175 G; 263 T; 0 other;
     aacagtgtta tgtttttttt agttagggat cgtaggcctg tggataaacc tcaagatttt        60
     ggagaggttt ttaacatgtt tgataatgag cccagtacgg ctactgtgaa gaatgttcat       120
     cgtgataggt atcaagtgct tcgcaaatgg catgcaactg ttacgggtgg acaatatgcg       180
     tcgaaggaac aagcccttgt gaagaaattt gttagggtta ataattatgt tgtgtataac       240
     cagcaagaag ctggcaagta tgaaaatcat tctgagaatg cgttaatgtt gtatatggca       300
     tgtactcatg catctaaccc agtgtatgct actttgaaga tacggatcta tttctatgat       360
     tccgtaacaa attaataaat attaaatttt attgaataag attggtctac atatacaatg       420
     tgttctaata catcccataa tacacgatca actgcacgaa ttacattatt aatactgata       480
     attcctaaat tatttaaata tttaaaaact tgagtcttaa agacccttaa gaaacgacca       540
     gtctgaggct gtgaagtcat ccagattcgg tagactagaa aacacttgtg cactcccaga       600
     gctttccgca ggttgtagtt gaactgtatt tggattgtga ttatgtcttc tttcatgaga       660
     aatggacggt tctggtgctc tgttatcttg aaataaaggg gattttgaat ctcccagata       720
     tacacgccat tctctgcttg agctgcagtg atgagttccc ctgtgcgtga atccatgatc       780
     gtgacaggct agtgctatga aatatgaaca tccacaaggg agatcaacac g                831
//