ID HM856625; SV 1; linear; genomic DNA; STD; VRL; 1684 BP. XX AC HM856625; XX DT 08-NOV-2010 (Rel. 106, Created) DT 08-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Tomato leaf curl New Delhi virus isolate COB-2 pre-coat protein (AV2), coat DE protein (AV1), AC5 (AC5), AC3 (AC3), and AC2 (AC2) genes, complete cds. XX KW . XX OS Tomato leaf curl New Delhi virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-1684 RA Saha A., Saha B., Saha D.; RT "Geminiviruses infecting cultivated tomato plants of sub-Himalayan plains RT of Eastern India: occurrence, detection, host range and diversity RT analysis"; RL Unpublished. XX RN [2] RP 1-1684 RA Saha A., Saha B., Saha D.; RT ; RL Submitted (26-JUL-2010) to the INSDC. RL Department of Botany, University of North Bengal, Siliguri, West Bengal RL 734013, India XX DR MD5; 81b1b926fdf7e424e5144c4fd320dceb. XX FH Key Location/Qualifiers FH FT source 1..1684 FT /organism="Tomato leaf curl New Delhi virus" FT /host="Lycopersicon esculentum" FT /isolate="COB-2" FT /mol_type="genomic DNA" FT /country="India:West Bengal" FT /collection_date="10-Nov-2009" FT /PCR_primers="fwd_seq: acnggnnaaracnatgtgggc, rev_seq: FT ggnaarathtggatgga" FT /PCR_primers="fwd_seq: atgkcsaagcgwccrgcaga, rev_seq: FT ttwaraatgtaawwkgagcag" FT /note="PCR_primers=fwd_seq: taatattacckgwkgvccsc" FT /db_xref="taxon:223347" FT gene 72..410 FT /gene="AV2" FT CDS 72..410 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="structural protein" FT /db_xref="GOA:E5GEC8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E5GEC8" FT /protein_id="ADP44678.1" FT /translation="MGDPLLREFPESVHGVRCMLAVKYLQEIEKNYSPDTVGYDLVRDL FT ILVLRAKNYGEATSRYHLFNARIESTPTSQLRQPLWSSCSCPHCPRHKSKGLDQQADEQ FT KTQNIQNV" FT gene 232..1002 FT /gene="AV1" FT CDS 232..1002 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="structural protein" FT /db_xref="GOA:E5GEC9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E5GEC9" FT /protein_id="ADP44679.1" FT /translation="MVKRPADIIFSTPASKVRRRLNFDSPFGARAVVPIVRVTKAKAWT FT NRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDVSHIGKVMCVSDVTRGSGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTGSPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGTYASKEQALVSKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(262..747) FT /gene="AC5" FT CDS complement(262..747) FT /codon_start=1 FT /gene="AC5" FT /product="AC5" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:E5GED0" FT /protein_id="ADP44680.1" FT /translation="MHVLHRCCARFIVKHVKNFPKILWRSCRTTVTDQKKHDAVSMVFC FT LDVFIHPYLPQHINRFHTKSLPYAMGESRSSGNITNTHDFANMRDIVPRFKGLHLTRAF FT ASPWHVGTSIHSVYSGFSVHRPVGPGLCFCDADNGDNCTSSKGAVEVETSAYFRCGR" FT gene complement(999..1409) FT /gene="AC3" FT CDS complement(999..1409) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enhancer protein" FT /db_xref="GOA:E5GED1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E5GED1" FT /protein_id="ADP44681.1" FT /translation="MITDSRTGESITADRAVSGVYTWEIRNPLYFKILKHNSRPFLRQH FT DIINIQIQFNHNLRKALGLHKCFLTFKIWTGLRPQIGIFLRVFKTQVLRYLDMVGVIGI FT YNVIRAVYHVLDNVMEQTIDVCTSYDIKLDIY" FT gene complement(1129..1548) FT /gene="AC2" FT CDS complement(1129..1548) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="transcription activator protein" FT /db_xref="GOA:E5GED2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E5GED2" FT /protein_id="ADP44682.1" FT /translation="MQSLSHSKNHSNPVAKTSIPQETKESIRRRRSDLQLGCTYYISIN FT CHDHGFTHRGVHHCGSSSEWRIYLGNSKSPVFQNFETQQQTLPKTARHHQYSNTIQPQP FT AESPGTSQVFSNFQNLDGLTPSDWDFLESLQNTGP" XX SQ Sequence 1684 BP; 476 A; 352 C; 387 G; 469 T; 0 other; tccacctaca agggttttgt tggggggggc ccaatttata ggcgcccccc ccccaggttc 60 aattcacaaa tatgggggat ccattattgc gcgaatttcc agaaagcgtt catggtgtca 120 ggtgcatgct agctgtaaaa tatctccaag agatagaaaa gaactattcc ccagacacag 180 tcggatacga tcttgtccga gatctaattc ttgttcttcg agcaaagaac tatggtgaag 240 cgaccagcag atatcatctt ttcaacgccc gcatcgaaag tacgccgacg tctcaacttc 300 gacagcccct ttggagctcg tgcagttgtc cccattgtcc gcgtcacaaa agcaaaggcc 360 tggaccaaca ggccgatgaa cagaaaaccc agaatataca gaatgtatag aagtcccgac 420 gtgccaaggg gatgcgaagg cccttgtaag gtgcagtcct ttgaatctag gcacgatgtc 480 tctcatattg gcaaagtcat gtgtgttagt gatgttaccc gaggatctgg actcacccat 540 cgcgtaggga agcgattttg tgtgaaatct gtttatgtgc tggggaagat atggatggat 600 gaaaacatca agacaaaaaa ccatactaac agcgtcatgt tttttttggt ccgtgaccgt 660 cgtcctacag gatctccaca agattttggg gaagttttta acatgtttga caatgaaccg 720 agcacagcaa cggtgaagaa catgcatcgt gatcgttatc aagtcttacg gaagtggcat 780 gctactgtga cgggaggaac atatgcatct aaggagcaag cattagttag caagtttgtt 840 agagttaata attatgttgt gtataaccaa caagaggccg gcaagtatga gaatcatact 900 gaaaacgcat taatgttgta tatggcctgt actcatgcat caaatcctgt gtatgctact 960 ttgaaaatcc ggatctattt ctatgattcg gtaacaaatt aataaatatc gagttttata 1020 tcatatgaag tacatacatc aatcgtttgt tccattacat tatccaatac atgataaact 1080 gctcttatta cattataaat tcctattaca ccaaccatat ccaggtacct aaggacctgt 1140 gttttgaaga ctctcaagaa aatcccaatc tgagggcgta agcccgtcca gattttgaaa 1200 gttagaaaac acttgtgaag tcccagggct ttccgcaggt tgtggttgaa ttgtatttga 1260 atattgatga tgtcgtgctg tcttaggaag ggtctgctgt tgtgtttcaa aattttgaaa 1320 tacaggggat ttcgaatttc ccaggtatat acgccactca ctgctcgatc cgcagtgatg 1380 gactcccctg tgcgtgaatc cgtgatcatg gcagttgatc gatatgtaat acgtacaccc 1440 caactgcaga tcactccgcc tcctgcgaat gctctccttc gtctcctgtg ggatcgatgt 1500 tttcgcgacc ggattagagt ggttcttcga gtgtgataaa gactgcatcg tgatcgttat 1560 caagtcttac ggaagtggca tgctactgtg acgggaggaa catatgcatc taaggagcaa 1620 gcattagtta gcaagtttgt tagagttaat aattatgttg tgtataacca acaagaggcc 1680 ggca 1684 //