ID HM804472; SV 1; linear; genomic RNA; STD; VRL; 5626 BP. XX AC HM804472; XX DT 13-DEC-2010 (Rel. 107, Created) DT 05-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Beet western yellows virus strain BJ genotype B, complete genome. XX KW . XX OS Beet western yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5626 RX DOI; 10.1007/s11262-010-0553-9. RX PUBMED; 21104195. RA Zhou C.J., Xiang H.Y., Zhuo T., Li D.W., Yu J.L., Han C.G.; RT "A novel strain of Beet western yellows virus infecting sugar beet with two RT distinct genotypes differing in the 5'-terminal half of genome"; RL Virus Genes 42(1):141-149(2011). XX RN [2] RP 1-5626 RA Han C.; RT ; RL Submitted (20-JUL-2010) to the INSDC. RL Plant Pathology, China Agricultural University, 2 Yuanmingyuan West Rd., RL Haidian District, Beijing 100193, China XX DR MD5; cf79c7a334fae29905dd8dab0f82c451. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5626 FT /organism="Beet western yellows virus" FT /host="sugar beet" FT /strain="BJ" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Sep-2009" FT /note="genotype: B" FT /db_xref="taxon:12042" FT 5'UTR 1..28 FT CDS 29..745 FT /codon_start=1 FT /product="P0 protein" FT /note="ORF0" FT /db_xref="GOA:E5GAB2" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:E5GAB2" FT /protein_id="ADR74375.1" FT /translation="MLFETNKHILVFRADRFLPASERILNTSEFLINYFILFVKYGNAD FT INVLLARLPLLLSEQLQGDFSYVPGHRQRHRLARLHKACCASLHSSSAVGLRLPPLQDV FT AGLFLARNASRNMGERIHKHQDLLAKGKDEFRKFLSVWCADAERSLSQASKACIERNSV FT CVELINLGLALRSLVLGPRVHCRSAYARVAVCVNRIYGENSGLDFWRLANFPLQYWPYH FT IEKHFAGSVVQRALQM" FT CDS join(150..1478,1478..3283) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /note="ORF1-ORF2" FT /db_xref="GOA:E5GAB3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E5GAB3" FT /protein_id="ADR74377.1" FT /translation="MAMQILTFFLLASLCSLVSSYKGTSVMSPGTANVTVWPGYIKPAV FT PHCIPQVQLAYDCPPFKTLQDYSSHEMLQEIWGRGYINTKTSLQKAKMNLESFSRSGVQ FT MLSAASHKLLKHALRGIAYVWSSSIWASLCALWFLVREYTVEVLTLGSLYALTAFMVKT FT AAWIFGASPIFLFNIGLTILKSISRVLWCKGPYKCEKSVEGFLSFKIPQSPPKHSVLQV FT QHPDGSHAGYATCVMLYNGATGLLTAQHVVSPGCKVVSTRNGNKIPLSEFKVEIESTAR FT DLMLMTGPPNWEGTLACKAVHFQTASNLCKSKASFFTFNGKTWESSNAEVTGISPCRKF FT VSVLSNTDPGHSGTPYFSGKTLLGVHVGGAKEENANYLAPVPPRAGLTTPNYVFETTAP FT QGRIFTEEEILELAEDYSFSEIRSILAAQKGKISYEMETAKSSGKRGGGSDRRNNRNPQ FT RKHPQGRGKQWRRNPPSCCSYYHENHSESGCFCQIPDHDCFFRRYQRDQRSHFAEDRCA FT IDREAGRGDPCREGDEETPESRAKKIREQAENFCRYFSSLYRWESGSGKEAPGFEQVGS FT LPQFYHPKQKGESHWGAKVLQLHPELEAQTRGFGWPQFGAQAELKSLRLQAARWLERAQ FT QVKIPSTEERERVIRKCCEAYQNAKSNGPNATRGNKLSWDNFLEDFKQAVFSLEFDAGI FT GVPYIAYGKPTHRGWVEDQELLPILARLTFIRLQKMLEARFEELSPEQLVQEGLCDPIR FT VFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRAVPSKPGFGLS FT TDEQVVEFVQMLSAQVKVSPPQLINNWRQHLVATDCSGFDWSVSDWLLEDDMEVRNRLT FT TDLNETTRKLRAAWLKCISNSVLSLSDGTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAF FT HCGAEWAMAMGDDALESVSTDLGKYAALGFKVEESSKLEFCSHIFEREDLAVPVNKAKM FT IYKLIHGYEPECGNPEVLVNYLTACFAILNELRSDPQMVQTLYSWLVEPVQPQKN" FT CDS 150..2009 FT /codon_start=1 FT /product="P1 protein" FT /note="ORF1" FT /db_xref="GOA:E5GAB4" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:E5GAB4" FT /protein_id="ADR74376.1" FT /translation="MAMQILTFFLLASLCSLVSSYKGTSVMSPGTANVTVWPGYIKPAV FT PHCIPQVQLAYDCPPFKTLQDYSSHEMLQEIWGRGYINTKTSLQKAKMNLESFSRSGVQ FT MLSAASHKLLKHALRGIAYVWSSSIWASLCALWFLVREYTVEVLTLGSLYALTAFMVKT FT AAWIFGASPIFLFNIGLTILKSISRVLWCKGPYKCEKSVEGFLSFKIPQSPPKHSVLQV FT QHPDGSHAGYATCVMLYNGATGLLTAQHVVSPGCKVVSTRNGNKIPLSEFKVEIESTAR FT DLMLMTGPPNWEGTLACKAVHFQTASNLCKSKASFFTFNGKTWESSNAEVTGISPCRKF FT VSVLSNTDPGHSGTPYFSGKTLLGVHVGGAKEENANYLAPVPPRAGLTTPNYVFETTAP FT QGRIFTEEEILELAEDYSFSEIRSILAAQKGKISYEMETAKSSGNGEAAATAGTTATRS FT ESTRKAEESSGVEIHQAAVPITMKTTASQVAFAKSQTTTASSDAISEIKEAILRKIDVR FT SIERQVVETLAEKAMKKPRRAGRRRSGNRQKTSADTSAPSTGGNQGQGKKPQVLNKWEA FT SPSFTTLNRRVNRIGEQKSFSSTQNWRPRPAASGGPNSGPRRN" FT misc_feature 3284..3483 FT /note="intergenic NCR" FT CDS 3484..5490 FT /codon_start=1 FT /transl_except=(pos:4090..4092,aa:OTHER) FT /product="P3-P5 readthrough protein domain" FT /note="ORF3-ORF5" FT /db_xref="GOA:E5GAB5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:E5GAB5" FT /protein_id="ADR74380.1" FT /translation="MNTVVGRRTINGRRRPRRQARRAQRTQQVVVVPAPRPARRRNRRR FT RGGRNRNRGVIPARGAGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSNGILKAYHE FT YKISMVTLEFISEASSQNSGSIAYELDPHCKLSSLSSTINKFGITKPGRRTFTASYING FT TEWHDATEDQFRILYKGNGSSSIAGSFRITIRCQFHNPKXVDDSSPPPAPAPQPPPPPP FT PSPSPEPQPCKKDRFWGYEGVPQNKISAARNDQFIDVKSLNYVQMYKWEDDRWDRINMQ FT ANYSRNDRNYAEPYMIIPASKGKFHVYVECNGQMAVKSIGGKADNSWNGMIAYDTSRRA FT WDVGNYKGCVITNYQKNNTFVAGHPDVELNNCKFTSSRGVECDCYLSFQLTCDDDDGAW FT MLYAPPIPKDDKYNYSVSYGEYVDRNCEWGAVSISIDEDNSTGNEIRMKPMKGAMHWSE FT PVDFARESQRQDFKTPSPPERGTDDLESEKKKEEENLLNELEERIPDANEDFWEGMPIR FT STSTTEGDRASTGSRLRGTLKPPGLPKPQPTRTITEFRPNPDLVEAWRPDLAPTYSKAD FT VAAATVIAGGSVHEGREHLKRREEAVLNNRERWGPLSAVSSLTGGTLRLSAQSEKLAKL FT TTSERRHYEFLKRSSGKTVAAEFLESLLAEKTS" FT CDS 3484..4092 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3 protein" FT /db_xref="GOA:E5GAB6" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:E5GAB6" FT /protein_id="ADR74378.1" FT /translation="MNTVVGRRTINGRRRPRRQARRAQRTQQVVVVPAPRPARRRNRRR FT RGGRNRNRGVIPARGAGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSNGILKAYHE FT YKISMVTLEFISEASSQNSGSIAYELDPHCKLSSLSSTINKFGITKPGRRTFTASYING FT TEWHDATEDQFRILYKGNGSSSIAGSFRITIRCQFHNPK" FT CDS 3515..4042 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4; P4 protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:E5GAB7" FT /protein_id="ADR74379.1" FT /translation="MGEDDHEDKQGALSALSKWLWSRPLGQHDAEIDDDEEAEIGTEEL FT YLPEEQVQARHSFSRRTISREVPVDQSRSGRVYQTAQHSLMEYSRPTMNIKSQWSLWSS FT SPRPLPRTPAPSLTSWTHTVNSVHSPPQLTNSGSRSPGGGRLQRLTSMERNGTMPLRTN FT SGSSTKAMVLHR" FT 3'UTR 5491..5626 XX SQ Sequence 5626 BP; 1532 A; 1437 C; 1426 G; 1231 T; 0 other; acaaaagaat atagcgagaa accagcgaat gctctttgaa actaacaagc acattctagt 60 tttcagagcg gatcgtttct tgccagcgag cgagcgaatc ttgaacacat cggagttctt 120 gatcaactac ttcattcttt tcgttaaata tggcaatgca gatattaacg ttcttcttgc 180 tcgcctccct ctgctcctta gtgagcagct acaaggggac ttcagttatg tccccgggca 240 ccgccaacgt caccgtttgg ccaggctaca taaagcctgc tgtgcctcat tgcattcctc 300 aagtgcagtt ggcttacgac tgccccccct tcaagacgtt gcaggattat tcctcgcacg 360 aaatgcttca agaaatatgg gggagaggat acataaacac caagacctcc ttgcaaaagg 420 caaagatgaa tttagaaagt ttctctcggt ctggtgtgca gatgctgagc gcagcctctc 480 acaagcttct aaagcatgca ttgagaggaa tagcgtatgt gtggagctca tcaatttggg 540 cctcgctttg cgctctttgg ttcttggtcc gcgagtacac tgtcgaagtg cttacgctcg 600 ggtcgctgta tgcgttaacc gcatttatgg tgaaaacagc ggcttggatt tttggcgcct 660 cgccaatttt cctcttcaat attggcctta ccatattgaa aagcatttcg cgggttctgt 720 ggtgcaaagg gccttacaaa tgtgagaagt ccgtagaggg ctttctctct tttaagatcc 780 cacagtcccc ccccaaacac agtgtgctcc aagtgcaaca cccagacggc tcccacgcag 840 gttatgccac gtgcgtgatg ctctacaatg gagcaaccgg tctcttgacc gcacaacatg 900 tagtttcacc tgggtgtaag gtcgtgtcga caaggaatgg aaacaaaatc cccttgtctg 960 agttcaaagt tgaaattgag tcaacggcac gagacctaat gctaatgact ggaccaccaa 1020 actgggaagg aacccttgct tgcaaggctg tacacttcca aacagcatca aatctctgca 1080 aatcaaaggc gtcattcttc accttcaatg ggaagacgtg ggaatcatca aacgcagagg 1140 tcacagggat ctccccctgc agaaaatttg tctccgtcct gagtaacaca gatccaggac 1200 acagcggcac cccgtatttt agtggtaaaa cactgctggg tgtgcacgta ggcggagcga 1260 aagaggagaa tgccaactat ttggcccccg tacccccccg tgccggttta acaactccaa 1320 attatgtctt cgagactacg gcaccacaag gaagaatctt cacggaagag gagatcctcg 1380 agctcgctga agactacagc ttcagcgaaa tccggtccat cttagccgcc cagaagggaa 1440 aaattagcta tgagatggag accgccaaga gctcgggaaa cggggaggcg gcagcgaccg 1500 ccggaacaac cgcaacccgc agcgaaagca cccgcaaggc cgaggaaagc agtggcgtag 1560 aaatccacca agctgctgtt cctattacca tgaaaaccac agcgagtcag gttgcttttg 1620 ccaaatccca gaccacgact gcttcttcag acgctatcag cgagatcaaa gaagccattt 1680 tgcggaagat cgatgtgcga tcgatcgaga ggcaggtcgt ggagaccctt gccgagaagg 1740 cgatgaagaa accccggaga gcagggcgaa gaagatcagg gaacaggcag aaaacttctg 1800 ccgatacttc agctccctct accggtggga atcagggtca gggaaagaag ccccaggttt 1860 tgaacaagtg ggaagcctcc cccagtttta ccaccctaaa cagaagggtg aatcgcattg 1920 gggagcaaaa gtccttcagc tccacccaga attggaggcc cagacccgcg gcttcgggtg 1980 gccccaattc ggggcccagg cggaattaaa atctctgcgg ctacaagccg ccaggtggct 2040 ggaacgcgcc cagcaagtta aaatcccctc gactgaggag cgggagcgcg ttataaggaa 2100 atgctgcgag gcctatcaga atgcaaaatc caatgggccg aacgcaacgc gaggaaacaa 2160 gctctcctgg gataacttcc tagaggattt taagcaagct gttttctcgc tcgagtttga 2220 cgctggcatc ggagtaccgt acatagctta cgggaagccg acacaccggg gatgggttga 2280 agaccaagag ttactcccca ttttggcccg cctgaccttc atccgattac agaagatgtt 2340 ggaggccagg ttcgaggagc tttccccgga acagctagtg caagaagggc tctgcgaccc 2400 aatacgcgtt tttgtcaaag gagagccgca caagcagtcc aaactcgatg aggggcgcta 2460 ccgcctcata atgagcgttt ccttggtgga ccaactggta gcccgggtct tgttccagaa 2520 ccagaacaag cgtgagatcg ccctatggag ggccgttcca tcaaagcccg gttttggctt 2580 gtctacggac gagcaagtcg tggagtttgt ccaaatgctc tccgcgcagg tgaaagtaag 2640 tcctcctcaa ctgatcaata attggaggca acacctagtt gctactgatt gttccggttt 2700 tgactggagc gtttcggact ggctccttga agatgatatg gaagtccgaa accgcctgac 2760 cacagatctt aacgagacaa cacgcaagct tcgcgctgct tggttgaaat gcatctccaa 2820 cagtgtcctg agtttatccg atggcacctt gcttgcgcag cgagtgcctg gagttcagaa 2880 gtcaggaagc tataacacct cctcatccaa ctcaaggatt agagtgatgg cagctttcca 2940 ctgtggagca gagtgggcaa tggccatggg cgatgacgcc cttgaatcag ttagcaccga 3000 cctggggaag tacgccgccc tgggatttaa agtcgaggaa tcttcaaaac tggaattctg 3060 ttctcatatc tttgagcgtg aagacctcgc cgttccggta aataaagcca aaatgattta 3120 caagctgata catggctatg aaccggaatg tggtaaccct gaggtacttg taaattatct 3180 gaccgcgtgc ttcgcaattc tcaatgaatt gcggtcagat cctcagatgg tccaaactct 3240 ctattcgtgg ctggttgaac cagtacagcc acaaaagaat taagggagta taaagaacac 3300 tagccgagca tacgtaagtt gcaagcgtcg gaagtctagt cttacacatt agccggacac 3360 acaaaataga tttcaagttt ctagcaggat ttgcatcagg ctttcttgcc gcaatcccat 3420 tttcagtagc cggcctttac ttagtctacc tcaaaatctc agcccacgtg cgaagcattg 3480 ttaatgaata cggtcgtggg tagaaggaca atcaatggga gaagacgacc acgaagacaa 3540 gcaaggcgcg ctcagcgcac tcagcaagtg gttgtggtcc cggcccctcg gccagcacga 3600 cgcagaaatc gacgacgacg aggaggccga aataggaacc gaggagttat acctgcccga 3660 ggagcaggtt caagcgagac attcgttttc tcgaaggaca atctcgcggg aagttccagt 3720 ggatcaatca cgttcgggcc gagtctatca gactgcccag cattctctaa tggaatactc 3780 aaggcctacc atgaatataa aatctcaatg gtcactttgg agttcatctc cgaggcctct 3840 tcccagaact ccggctccat cgcttacgag ctggacccac actgtaaact cagttcactc 3900 tcctccacaa ttaacaaatt cgggatcacg aagcccggga ggaggacgtt tacagcgtct 3960 tacatcaatg gaacggaatg gcacgatgcc actgaggacc aattcaggat cctctacaaa 4020 ggcaatggtt cttcatcgat agcaggttct ttcagaatca ctataaggtg ccagttccat 4080 aatcccaaat aggtagacga tagttccccc cccccagcac cggcgcccca accgccgcca 4140 cctccaccac catcaccctc tcccgaaccg cagccctgta aaaaggatcg attctggggt 4200 tatgagggag taccacagaa caaaatatca gctgcacgta acgaccaatt cattgacgtg 4260 aaatctttaa actacgtgca gatgtacaag tgggaagatg ataggtggga tcgcatcaat 4320 atgcaggcca attattcccg taatgaccgc aactacgcgg aaccgtacat gattatacct 4380 gccagcaaag gcaagtttca tgtttacgtt gagtgtaacg ggcaaatggc cgtcaaatca 4440 attggtggta aggccgataa cagctggaat ggtatgattg cttatgatac ctccagaaga 4500 gcgtgggacg ttggaaatta caaaggttgt gtgataacaa attaccagaa gaataatacc 4560 tttgtagctg gtcaccccga tgttgagctt aataattgta aattcacaag ctctcgggga 4620 gtggagtgtg attgttacct ctcgtttcaa ctgacgtgtg atgacgatga tggagcgtgg 4680 atgttgtacg cccctccgat ccccaaagac gacaagtaca attattccgt atcttacggt 4740 gagtacgtcg accgcaattg cgagtgggga gccgtctcca tatccatcga tgaggataac 4800 tccacaggga acgaaatcag aatgaaacca atgaaggggg caatgcattg gtctgaaccc 4860 gtagactttg cccgggagag tcaaagacaa gactttaaaa ctccttcgcc accagagcga 4920 ggtaccgatg acctggaatc ggagaagaag aaggaagagg aaaaccttct taacgagctt 4980 gaggagcgca tacctgatgc caacgaagac ttctgggaag gtatgcctat cagatccacg 5040 tcaactacag aaggcgatcg agcctccaca ggctctcgcc ttcgtggcac cctcaagcca 5100 ccgggtcttc caaagccaca gcccacccgc accataactg aatttagacc aaatcctgat 5160 ttggttgagg cgtggcggcc cgatctagca ccgacatact ccaaggcgga cgttgcagca 5220 gcaacagtga tcgccggagg ttccgttcat gagggacgag aacacctcaa gaggagagaa 5280 gaagccgtct tgaacaacag agagaggtgg ggaccacttt cagcggtttc ctccttaacc 5340 ggcggcactc tgaggttgag cgctcagtct gagaagctcg ccaagcttac aactagcgag 5400 cgtcgccact acgagtttct taagagatcg agtggaaaga ctgtagcagc tgagtttctc 5460 gagtcgttgt tagcggagaa aacctcataa ctcggcttcc agtgggcctt atcaaatcac 5520 tgggaacatc aagccaaaga tgtaaaattg gaacgactcc gaaaggatag gcaacgaacg 5580 ttcccactac ggtggaaaca ggggatttcc cctggcgttt cggtgt 5626 //