ID HM804471; SV 1; linear; genomic RNA; STD; VRL; 5674 BP. XX AC HM804471; XX DT 13-DEC-2010 (Rel. 107, Created) DT 05-MAY-2011 (Rel. 108, Last updated, Version 2) XX DE Beet western yellows virus strain BJ genotype A, complete genome. XX KW . XX OS Beet western yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RP 1-5674 RX DOI; 10.1007/s11262-010-0553-9. RX PUBMED; 21104195. RA Zhou C.J., Xiang H.Y., Zhuo T., Li D.W., Yu J.L., Han C.G.; RT "A novel strain of Beet western yellows virus infecting sugar beet with two RT distinct genotypes differing in the 5'-terminal half of genome"; RL Virus Genes 42(1):141-149(2011). XX RN [2] RP 1-5674 RA Han C.; RT ; RL Submitted (20-JUL-2010) to the INSDC. RL Plant Pathology, China Agricultural University, 2 Yuanmingyuan West Rd., RL Haidian District, Beijing 100193, China XX DR MD5; 3ac6481d516378f319b02fac235ec424. DR EuropePMC; PMC4422679; 25946037. DR RFAM; RF01074; RF_site1. XX FH Key Location/Qualifiers FH FT source 1..5674 FT /organism="Beet western yellows virus" FT /host="sugar beet" FT /strain="BJ" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Sep-2009" FT /note="genotype: A" FT /db_xref="taxon:12042" FT 5'UTR 1..28 FT CDS 29..745 FT /codon_start=1 FT /product="P0 protein" FT /note="ORF0" FT /db_xref="GOA:E5GAA6" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:E5GAA6" FT /protein_id="ADR74369.1" FT /translation="MLFETYNHILIFKANRFLTTGDRILNTSEFLINFFILFVKHDDAN FT VNVFLARLPLLLSEQLQGDFCYVPGRRQRHRLARLHRACGASLHSSSAVNLRLPPTQDV FT AGLFLARDASRSMGERIHKHQDLLAKGKDEFIKFLSVWCADAERNLSQASKIRIKRDDI FT CVELIDLGFALRALVLDPRVHCRSAYARVAICVNRIYGENSGLDFWRLANFPLQCWPYH FT IEKHFTGSVVQKILQM" FT CDS join(150..1478,1478..3331) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-P2 fusion protein" FT /note="ORF1-ORF2" FT /db_xref="GOA:E5GAA7" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E5GAA7" FT /protein_id="ADR74371.1" FT /translation="MTMQMLTFFLLASLCSLASSYKGISVMSPGAANVTVWPGYTEPAA FT PHYIPLVQLTYDCPPPKTLQDYSSREMLQEVWGRGFTNTKTSLLKAKTSLLNFCRSGVQ FT MLSATSHKLLKYALRGMTYVWSSLIWASLCALWFLIREYTVEVLMLGSLYVLTVFMVKT FT AAWIFGDSPIFLFNVGLTILRSISRVLWCRRSYKCEKSVEGFLSFKIPQTPPKNSILQV FT QHPDGSHAGYATCVMLYNGTTGLLTAQHVVSSGCKVVSTRNGNKIPLSEFKVEIESPTR FT DLMLMTGPPNWEGTLACKAVHFQTASNLCKSKASFFTFNGEAWESSNAEITGTSPCRKF FT VSVLSNTDPGHSGTPYFNGKTLLGVHIGGAKEENANYLAPVPPRAGLTIPNYVFETTAP FT QGRIFTEEEILELAEDYSYSEIRSMMAAHKGKASYEVETAKSSGKRESGSVRRNNRNPQ FT RKHPQGRGKQWRRNPPSCCSHFTEGTLGSRCQASHIHAPHDEGRPGCWCEIPNHDCFFR FT RFQRDQRSHPTEDRCSFDREAGCGDPCREGNEETPESRAEKIREQAENFCQYFSSLYRW FT ESGSGKEAPGFEQIGSLPQFYHPKQKGESRWGAKVLQLHPELAVQTRGFGWPQFGAQAE FT LKSLRLQAARWLERAQQVKIPSTEERERVIRKRCEAYQNAKSNGPNATRGNKLSWENFL FT EDFKQAVFSLEFDAGIGVPYIAYGKPTHRGWVEDQKLLPVLAHLTFIRLQKMLEARFEE FT LSPEQLVQEGLCDPIRVFVKGEPHKQSKLDEGRYRLIMSVSLVDQLVARVLFQNQNKRE FT IALWRAVPSKPGFGLSTDEQVVEFVQMLSAQVKVSPPQLIDDWRQHLVATDCSGFDWSV FT SDWLLEDDMEVRNRLTTDLNETTSKLRAAWLKCISNSVLCLSDGTLLAQRVPGVQKSGS FT YNTSSSNSRIRVMAAFHCGAEWAMAMGDDALESVSTDLGKYAALGFKVEESSKLEFCSH FT IFEREDLAVPVNKAKMIYKLIHGYEPECCDPEVLVNYLTACFAILNELRSDPQMVQTLY FT SWLVEPVQPQKN" FT CDS 150..2057 FT /codon_start=1 FT /product="P1 protein" FT /note="ORF1" FT /db_xref="GOA:E5GAA8" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:E5GAA8" FT /protein_id="ADR74370.1" FT /translation="MTMQMLTFFLLASLCSLASSYKGISVMSPGAANVTVWPGYTEPAA FT PHYIPLVQLTYDCPPPKTLQDYSSREMLQEVWGRGFTNTKTSLLKAKTSLLNFCRSGVQ FT MLSATSHKLLKYALRGMTYVWSSLIWASLCALWFLIREYTVEVLMLGSLYVLTVFMVKT FT AAWIFGDSPIFLFNVGLTILRSISRVLWCRRSYKCEKSVEGFLSFKIPQTPPKNSILQV FT QHPDGSHAGYATCVMLYNGTTGLLTAQHVVSSGCKVVSTRNGNKIPLSEFKVEIESPTR FT DLMLMTGPPNWEGTLACKAVHFQTASNLCKSKASFFTFNGEAWESSNAEITGTSPCRKF FT VSVLSNTDPGHSGTPYFNGKTLLGVHIGGAKEENANYLAPVPPRAGLTIPNYVFETTAP FT QGRIFTEEEILELAEDYSYSEIRSMMAAHKGKASYEVETAKSSGNGKAAASAETTATRK FT ESTHKAGESSGVETHQAAVPTSPKEHSAQDVKQATYTPPMMRADQVAGAKSQTTTASSD FT AFSEIKEAILRKIDVRSIERQVVETLAEKAMKRPRRAGRRRSANKQKTSASTSAPSTDG FT NQGQEKKPPVSNKSEASPSFTTLNKRANRVGEQKSSNSTQSWQYRPVASGGPSSGPKRN FT " FT misc_feature 3332..3531 FT /note="intergenic NCR" FT CDS 3532..5538 FT /codon_start=1 FT /transl_except=(pos:4138..4140,aa:OTHER) FT /product="P3-P5 readthrough protein domain" FT /note="ORF3-ORF5" FT /db_xref="GOA:E5GAA9" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:E5GAA9" FT /protein_id="ADR74374.1" FT /translation="MNTVVGRRTINGRRRPRRQARRAQRTQQVVMVPAPRPARRRNRRR FT RGGRNRNRGVIPARGAGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSNGILKAYHE FT YKISMVTLEFISEASSQNSGSIAYELDPHCKLSSLSSTINKFGITKPGRRTFTASYING FT TEWHDATEDQFRILYKGNGSSSIAGSFRITIRCQFHNPKXVDDSSPPPAPAPQPPPPPP FT PSPSPEPQPCKKDRFWGYEGVPQNKISAARNDQFIDVKSLNYVQMYKWEDDRWDRINMQ FT ANYSRNDRNYAEPYMIIPANKGKFHVYVECNGQMAVKSIGGKADNSWNGMIAYDTSRRA FT WDVGNYKGCVITNYQKNNTFVAGHPDVELNNCKFTSSRGVECDCYLSFQLTCDDDDGAW FT MLYAPPIPKGDKYNYSVSYGEYVDRNCEWGAVSISIDEDNSTGNEIKMKPMKGAMHWSE FT PVDFARESQRQDFKTPSPPERGTDDLESEKKKEEENLLNELEERIPDANEDFWEGMPVR FT STSTTEGDRASTGSRLRGTLKPPGLPKPQPTRTITEFRPNPDLVEAWRPDLAPTYSKAD FT VAAATVIAGGSVHEGREHLKRREEAVLNNRERWGPLSAVSSLTGGTLSLSAQSEKLAKL FT TTSERRHYEFLKRSSGKVVAAEFLESLLAEKTS" FT CDS 3532..4140 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3; P3 protein" FT /db_xref="GOA:E5GAB0" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:E5GAB0" FT /protein_id="ADR74372.1" FT /translation="MNTVVGRRTINGRRRPRRQARRAQRTQQVVMVPAPRPARRRNRRR FT RGGRNRNRGVIPARGAGSSETFVFSKDNLAGSSSGSITFGPSLSDCPAFSNGILKAYHE FT YKISMVTLEFISEASSQNSGSIAYELDPHCKLSSLSSTINKFGITKPGRRTFTASYING FT TEWHDATEDQFRILYKGNGSSSIAGSFRITIRCQFHNPK" FT CDS 3563..4090 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4; P4 protein" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:E5GAB1" FT /protein_id="ADR74373.1" FT /translation="MGEDDHEDKQGALSALSKWLWSRPLGQHDAEIDDDEEAEIGTEEL FT YLPEEQVQARHSFSRRTISREVPVDQSRSGRVYQTAQHSLMEYSRPTMSIKSQWSLWSS FT SPRPLPRTPAPSLTSWTHTVNSVHSPPQLTNSGSRSPGGGRLQRLTSMERNGTTPLRTN FT SGSSTKAMVLHR" FT 3'UTR 5539..5674 XX SQ Sequence 5674 BP; 1552 A; 1459 C; 1415 G; 1248 T; 0 other; acaaaagaat atagcgagaa accagcgaat gctctttgag acttataacc atattttgat 60 cttcaaagcg aatcgtttct tgactacagg cgatcggatc ttgaacacat cagagttctt 120 gatcaatttc ttcattcttt tcgttaaaca tgacgatgca aatgttaacg tttttcttgc 180 tcgcctccct ctgctcctta gcgagcagtt acaaggggat ttctgttatg tccccgggcg 240 ccgccaacgt caccgtttgg ccaggctaca cagagcctgc ggcgcctcac tacattcctc 300 tagtgcagtt aacttacgac tgccccccac ccaagacgtt gcaggattat tcctcgcgcg 360 agatgcttca agaagtatgg gggagaggat tcacaaacac caagacctcc ttgctaaagg 420 caaagacgag tttattaaat ttctgtcggt ctggtgtgca gatgctgagc gcaacctctc 480 acaagcttct aaaatacgca ttaagaggga tgacatatgt gtggagctca ttgatttggg 540 cttcgctttg cgcgctttgg ttcttgatcc gcgagtacac tgtcgaagtg cttatgctcg 600 ggtcgctata tgtgttaacc gtatttatgg tgaaaacagc ggcctggatt tttggcgact 660 cgccaatttt cctcttcaat gttggcctta ccatattgag aagcatttca cgggttctgt 720 ggtgcagaag atcttacaaa tgtgagaaat ccgttgaggg tttcctgtct ttcaagatcc 780 ctcagacccc tcctaagaac agtatcctcc aagtgcaaca tccagacggc tcccacgcgg 840 gctatgccac atgcgtgatg ctttacaacg gaacaaccgg tcttctgacc gcgcaacatg 900 tagtttcgtc tgggtgtaag gtcgtgtcga caaggaatgg aaacaaaatc cccttgtctg 960 agtttaaggt tgaaattgaa tcaccaacac gagacctaat gctgatgaca ggaccaccaa 1020 actgggaagg aacccttgct tgcaaggccg tacacttcca aacagcatcc aacctctgca 1080 aatcaaaagc atccttcttc accttcaacg gggaagcatg ggaatcatca aatgcagaga 1140 tcacagggac ctccccctgc cgcaaattcg tttctgtcct gagtaataca gatccagggc 1200 acagtggcac cccgtacttt aatggcaaaa cgctattggg tgtgcacata ggcggagcga 1260 aagaggagaa tgccaattat ttggcacccg tacccccccg tgccggttta acaattccaa 1320 actatgtttt tgagaccacg gcaccccagg ggagaatctt cacggaagaa gagattctcg 1380 agctagctga agattacagc tatagcgaaa ttcggtccat gatggctgct cataaaggaa 1440 aagcgagcta cgaagtagag accgccaaaa gctcgggaaa cgggaaagcg gcagcgtccg 1500 ccgaaacaac cgcaacccgc aaagaaagca cccacaaggc cggggaaagc agtggcgtag 1560 aaacccacca agctgctgtt cccacttcac cgaaggaaca ctcggctcaa gatgtcaagc 1620 aagccacata cacgcccccc atgatgaggg ccgaccaggt tgctggtgcg aaatcccaaa 1680 ccacgactgc ttcttcagac gctttcagcg agatcaaaga agccatccta cggaagatcg 1740 atgttcgttc gatcgagagg caggttgtgg agacccttgc cgagaaggca atgaagagac 1800 cccggagagc agggcggaga agatccgcga acaagcagaa aacttctgcc agtacttcag 1860 ctccctctac cgatgggaat cagggtcagg aaaagaagcc cccggtttcg aacaaatcgg 1920 aagcctcccc cagttttacc accctaaaca aaagggcgaa tcgcgttggg gagcaaaagt 1980 cctccaactc cacccagagt tggcagtaca gacccgtggc ttcgggtggc cccagttcgg 2040 ggcccaagcg gaattgaaat ccttgcggct acaagccgcc aggtggctgg aacgcgccca 2100 gcaagttaaa atcccctcaa ctgaggagcg ggagcgcgtc ataaggaaac gctgcgaggc 2160 ctaccaaaat gcgaaatcta atgggcctaa tgctacacga ggaaacaagc tctcctggga 2220 aaacttccta gaggacttta agcaagctgt tttctcgctc gagtttgacg ctggaatcgg 2280 agtaccgtac atcgcatacg ggaaaccgac gcaccgggga tgggtcgaag accaaaagtt 2340 acttcccgtc ttagctcacc tgaccttcat ccgattacag aagatgttgg aggccaggtt 2400 tgaagagctt tccccggaac agctagtgca agaagggctc tgtgacccaa tacgagtctt 2460 tgtcaaagga gagccgcaca agcagtctaa actcgatgag gggcgctacc gcctcataat 2520 gagcgtttcc ttggtggatc aactggtagc ccgggtcttg tttcagaacc aaaacaagcg 2580 tgaaatcgcc ctgtggaggg cagtaccatc caagcccggt tttggcttgt ctacggacga 2640 gcaagtcgtg gagtttgttc aaatgctctc cgcgcaggtg aaagtaagtc ctccccaact 2700 gattgatgat tggaggcaac acctagttgc aactgattgt tccggcttcg actggagtgt 2760 ttcggactgg cttcttgaag atgatatgga agtccgaaac cgcctcacca cagaccttaa 2820 tgaaacgaca agcaagcttc gcgctgcttg gttgaagtgc atctccaaca gtgtcctgtg 2880 tctctccgat ggtaccctgc tcgcgcagcg cgtgcctgga gttcagaaat caggaagcta 2940 caacacctcc tcatccaatt ctcggattag agtgatggca gctttccact gtggagccga 3000 gtgggcaatg gcgatgggcg atgacgccct tgaatcagtt agcaccgacc tggggaaata 3060 cgccgcccta ggattcaaag tcgaggagtc ttcaaaactg gaattttgct ctcatatctt 3120 tgagcgtgaa gacctcgccg ttccggtcaa taaagccaaa atgatctaca agctaataca 3180 tggctatgaa ccggaatgct gcgaccctga ggtgcttgtt aactacctga ccgcgtgctt 3240 cgcgattctc aatgaattac ggtcagatcc tcagatggtt caaactctct attcgtggct 3300 ggtcgaacca gtgcagccac aaaagaatta agggagtata aagaacacta gccgagcata 3360 cgtaagttgc aagcgtcgga agtctagtct tacacattag ccggacacac aaaatagatt 3420 tcaagtttct agcaggattt gcatcaggct ttcttgccgc aatcccattt tcagtagccg 3480 gcctttactt agtctacctc aaaatctcag cccacgtgcg aagcattgtt aatgaatacg 3540 gtcgtgggta gaaggacaat caatgggaga agacgaccac gaagacaagc aaggcgcgct 3600 cagcgcactc agcaagtggt tatggtcccg gcccctcggc cagcacgacg cagaaatcga 3660 cgacgacgag gaggccgaaa taggaaccga ggagttatac ctgcccgagg agcaggttca 3720 agcgagacat tcgttttctc gaaggacaat ctcgcgggaa gttccagtgg atcaatcacg 3780 ttcgggccga gtctatcaga ctgcccagca ttctctaatg gaatactcaa ggcctaccat 3840 gagtataaaa tctcaatggt cactttggag ttcatctccg aggcctcttc ccagaactcc 3900 ggctccatcg cttacgagct ggacccacac tgtaaactca gttcactctc ctccacaatt 3960 aacaaattcg ggatcacgaa gcccgggagg aggacgttta cagcgtctta catcaatgga 4020 acggaatggc acgacgccac tgaggaccaa ttcaggatcc tctacaaagg caatggttct 4080 tcatcgatag caggttcttt cagaatcact ataaggtgcc agttccataa tcccaaatag 4140 gtagacgata gttccccccc cccagcaccg gcgccccaac cgccgccacc tccaccacca 4200 tcaccctctc ccgaaccgca gccctgtaaa aaggatcgat tctggggtta tgagggagta 4260 ccacagaaca aaatatcagc tgcacgtaac gaccaattca ttgacgtgaa atctttaaac 4320 tacgtgcaga tgtacaagtg ggaagatgat aggtgggacc gcatcaatat gcaggccaat 4380 tattcccgta atgaccgcaa ctacgcggaa ccgtacatga ttatacctgc caacaaaggc 4440 aagtttcatg tttacgttga gtgtaacggg caaatggccg tcaaatcaat tggtggtaag 4500 gccgataaca gctggaatgg tatgattgct tatgatacct ccagaagagc gtgggacgtt 4560 ggaaattaca aaggttgtgt gataacaaat taccagaaga ataatacctt tgtagctggt 4620 caccccgatg ttgagcttaa taattgtaaa ttcacaagct ctcggggagt ggagtgtgat 4680 tgttacctct cgtttcaact gacgtgtgat gacgatgatg gagcgtggat gttgtacgcc 4740 cctccgatcc ccaaaggcga caagtacaat tattccgtat cttacggtga gtacgtcgac 4800 cgcaattgcg agtggggagc cgtctccata tccatcgatg aggataactc cacagggaac 4860 gaaatcaaaa tgaaaccaat gaagggggca atgcattggt ctgaacccgt agactttgcc 4920 cgggagagtc aaagacaaga ctttaaaact ccttcgccac cagagcgagg taccgatgac 4980 ctggaatcgg agaagaagaa ggaagaggaa aaccttctta acgagcttga ggagcgcata 5040 cctgatgcca atgaagactt ctgggaaggt atgcctgtca ggtccacgtc aactacagaa 5100 ggcgatcgag cctccacagg ctctcgcctt cgtggcaccc tcaagccacc gggtcttcca 5160 aagccacagc ccacccgcac cataactgaa tttagaccaa atcctgattt ggttgaggcg 5220 tggcggcccg atctagcacc gacatactcc aaggcggacg ttgcagcagc aacagtgatc 5280 gccggaggtt ccgttcatga gggacgagaa cacctcaaga ggagagaaga agccgtcttg 5340 aacaacagag agaggtgggg accactttca gcggtttcct ccttaaccgg cggcactctg 5400 agtttgagcg ctcagtctga gaagctcgcc aagcttacaa ctagcgagcg tcgccactac 5460 gagtttctta agagatcgag tggaaaggtt gtagcagctg agtttctcga atcgttgtta 5520 gcggagaaaa cctcataatt cggcttccag tgggccttat caaatcacta ggaacatcaa 5580 gccaaagatg taaaattgga acgactccga aaggataggc aacgaacgtt cccactacgg 5640 tggaaacagg ggatttcccc tggcgcttcg gtgt 5674 //