Dbfetch
ID HM777509; SV 1; circular; genomic DNA; STD; VRL; 2722 BP. XX AC HM777509; XX DT 29-DEC-2010 (Rel. 107, Created) DT 21-JUN-2011 (Rel. 109, Last updated, Version 3) XX DE Rhynchosia yellow mosaic India virus clone JRH9 segment DNA-A, complete DE sequence. XX KW . XX OS Rhynchosia yellow mosaic India virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2722 RX DOI; 10.1007/s11262-011-0580-1. RX PUBMED; 21318241. RA Jyothsna P., Rawat R., Malathi V.G.; RT "Molecular characterization of a new begomovirus infecting a leguminous RT weed Rhynchosia minima in India"; RL Virus Genes 42(3):407-414(2011). XX RN [2] RP 1-2722 RA Jyothsna P., Malathi V.G.; RT ; RL Submitted (20-JUL-2010) to the INSDC. RL Advanced Centre for Plant Virology, Indian Agricultural Research Institute, RL Pusa Campus, New Delhi, Delhi 110012, India XX DR MD5; 8789208f34455d68af350f01ec0edf5f. XX FH Key Location/Qualifiers FH FT source 1..2722 FT /organism="Rhynchosia yellow mosaic India virus" FT /segment="DNA-A" FT /host="Rhynchosia" FT /isolate="Thiruvananthapuram" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="Oct-2009" FT /clone="JRH9" FT /note="acronym: RhYMIV" FT /db_xref="taxon:935473" FT gene 130..489 FT /gene="AV2" FT CDS 130..489 FT /codon_start=1 FT /gene="AV2" FT /product="precoat protein" FT /note="PCP" FT /db_xref="GOA:E7CWL1" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:E7CWL1" FT /protein_id="ADU02162.1" FT /translation="MIKMWDPLLNDFPKSRHGFRCMIAIKFLQACQEQYPNNSLGFEFL FT RKLISNLRSKDHAKAELRYRLLITAISSSSKIELRQPNGTTCTCIQCPRHNKEKALDES FT SDVEETTFLSIVSDT" FT gene complement(222..515) FT /gene="AC5" FT CDS complement(222..515) FT /codon_start=1 FT /gene="AC5" FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:E7CWL2" FT /protein_id="ADU02167.1" FT /translation="MDLHNHVEHQVSDTIDKNVVSSTSDDSSNAFSLLCLGHWMQVQVV FT PLGCRSSIFDELLIAVMRRRYRNSALAWSLERKFEMSLRKNSNPNELLGYCS" FT gene 299..1072 FT /gene="AV1" FT CDS 299..1072 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP; involved in encapsidation" FT /db_xref="GOA:E7CWL3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7CWL3" FT /protein_id="ADU02163.1" FT /translation="MPKRNYDTAFSSPLSVVRRRLNFDSPMALPAPASSAQGTTRRRRW FT TNRPMWRKPRFYRLYRTPDVPRGCEGPCKVQSFEQRHDIAHTGKVICISDVTRGNGITH FT RVGKRFCVKSVYITGKVWMDENIKSKNHTNTVMFKLCRDRRPFGTPMDFGQVFNMYDNE FT PSTATVKNDLRDRFQVLRRFNATVTGGQYACKEQAMVNRFYRVNNHVVYNHQEAAKYEN FT HTENALLLYMACTHASNPVYATLKIRIYFYDSVGN" FT gene complement(1191..1466) FT /gene="AC3" FT misc_feature complement(1191..1466) FT /gene="AC3" FT /note="similar to replication enhancer protein; REn" FT gene complement(1207..1614) FT /gene="AC2" FT CDS complement(1207..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="TrAP" FT /db_xref="GOA:E7CWL4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7CWL4" FT /protein_id="ADU02165.1" FT /translation="MRNSTPSKNHFSPPSIKAQHRCAKKKAIRRKRIDLKCGCSYYMHI FT NCANHGFTHRGEHHCNSSTEWRIYLGDKKSPIFQDPRASQETVQQQQRHFDCPDQIQPQ FT LKEGTGDSQMFFDLQNLDDLTASDWSFLKDI" FT gene complement(1514..2602) FT /gene="AC1" FT CDS complement(1514..2602) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiation protein" FT /note="Rep" FT /db_xref="GOA:E7CWL5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7CWL5" FT /protein_id="ADU02164.1" FT /translation="MANSSRFKINAKNYFLTYPRCTLSKEAALEQLLAISTPVNKKFIR FT ICRELHEDGIPHLHVLLQFEGKFQCKNQRFFDLHAETRSTYFHPNIQGAKSSSDVKKYM FT EKDGDVVDHGEFQIDGRSSRGGKQSANDAYAEAINAGNTSEALVILKEKAPKDFVLYFH FT NLAKNFDKIFEKSVPVYEPRYSIESFDNVPPYISSWAERNVKDSAARPERPISIVIEGD FT SRTGKTTWARALGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNVKYGKPTMIKGGIPTIFLCNPGNKSSYKEFLDEEANASLKLWASKNAEFYTIKEPF FT FTTVNQSATQVRQEESNSTQTN" FT gene complement(2152..2451) FT /gene="AC4" FT CDS complement(2152..2451) FT /codon_start=1 FT /gene="AC4" FT /product="PTGS suppressor" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7CWL6" FT /protein_id="ADU02166.1" FT /translation="MKMAFLTYMFCFNSKENSSAKTRGSSISMPKPGQHISIRTFRELK FT VAQMLKNTWKKTETSLIMENSKLMVDQVEEVSNLQTTLMPKQSMQEIPLRRSLY" XX SQ Sequence 2722 BP; 735 A; 543 C; 580 G; 864 T; 0 other; acctgaggac ccgcgccggt gtacgaggcg tcttttgctt tatttacctt tatgtcattc 60 aaccaaatgc gctcctcagc gcttagatat tttaaatttg aattataaac gtggggacta 120 cgtaccccaa tgataaagat gtgggatcca ttgttgaatg actttcccaa atcacggcat 180 ggttttcggt gcatgattgc cattaagttc ttgcaagcct gtcaagaaca atatcctaat 240 aattcattgg gatttgaatt tttgcgcaaa ctcatttcaa atttgcgctc caaggaccat 300 gccaaagcgg aattacgata ccgccttctc atcaccgcta tcagtagttc gtcgaagatt 360 gaacttcgac agcccaatgg cactacctgc acctgcatcc agtgcccaag gcacaacaag 420 gagaaggcgt tggacgaatc gtccgatgtg gaggaaacca cgtttttatc gattgtatcg 480 gacacctgat gttccacgtg gttgtgaagg tccatgtaag gttcaatcct ttgaacaacg 540 gcatgatatt gcccatactg gcaaagtaat ttgcatttca gatgttactc gaggtaatgg 600 aattactcat cgtgttggga aacgtttctg tgtcaagtct gtatatatta ctggtaaggt 660 ttggatggac gagaatatta agtccaaaaa ccatactaat acggtcatgt ttaagttatg 720 tcgtgacaga cgaccctttg ggactcctat ggatttcggt caggtgttta atatgtatga 780 taatgaacca agtactgcga cagtgaagaa cgatcttcgt gatcgttttc aagttctgcg 840 aagatttaat gccacggtta caggtggcca atatgcatgc aaggagcaag ccatggttaa 900 ccgtttttat cgtgttaaca atcatgtggt ttataatcat caggaagctg ccaaatatga 960 aaatcatact gagaatgcgt tgttattgta tatggcatgt actcatgctt caaaccctgt 1020 gtatgcgaca ttaaagatca ggatctattt ctatgattct gttggaaatt aataaagatt 1080 gaattttatt tcattgtttt gttgcacctc aattgtgcct tcaaatacat tgtacattac 1140 atgatcgaca gatcgaataa cattattaat acaaagtacg cctaaactat tcagaaattg 1200 aaaagcttaa atgtctttaa gaaaagacca gtcggaggcc gtaaggtcgt ccaaattttg 1260 aaggtcaaaa aacatttgtg aatccccagt gccttcctta agttgtggtt gaatctgatc 1320 tggacagtca aaatgtcgtt gttgctgttg aacggtctct tgtgatgctc gaggatcttg 1380 aaatataggg gattttttat ctcccagata tatacgccat tctgtgcttg aattgcagtg 1440 atgttctccc ctgtgcgtaa atccatggtt agcacagtta atgtgcatat aatatgagca 1500 gccgcacttg aggtcaattc gtttgcgtcg aattgctttc ttcttggcgc acctgtgttg 1560 cgctttgatt gacggtggtg aaaaatggtt ctttgatggt gtagaattcc gcattcttgg 1620 aagcccacaa ttttagtgat gcatttgctt cctcgtcgag gaactcttta taagaagatt 1680 tgttgcctgg gttgcagaga aagattgtgg ggataccacc tttaatcatt gtgggctttc 1740 cgtatttgac gttactttgc cagtcacgtt gtgcgcccat gaattctttg aaatgtttca 1800 aataatgcgg atcgacgtca tcaatgacgt tataccatgc atcgttggaa tacactttcg 1860 gactaaggtc caaatggccg cagagataat tgtgcggccc caatgcacga gcccatgtcg 1920 tcttcccagt acgactatca ccttcaatga caatgctaat cggtctttct ggccgcgcag 1980 cggaatcctt cacatttctt tccgcccaag aagaaatgta cggtggaaca ttatcgaatg 2040 attcaattga ataacgaggt tcataaactg gaacactttt ttcaaaaatt ttatcaaaat 2100 tcttagctaa attatgaaaa tataaaacga aatccttcgg agccttttcc tttagtataa 2160 cgagcgcctc agaggtattt cctgcattga ttgcttcggc ataagcgtcg tttgcagatt 2220 gcttacctcc tcgacttgat cgaccatcaa tttggaattc tccatgatca acgacgtctc 2280 cgtctttttc catgtatttt ttaacatctg agctactttt agctccctga atgttcggat 2340 ggaaatatgt tgacctggtt tcggcatgga gatcgaagaa cctctggttt ttgcactgga 2400 attttccttc gaattgaagc agaacatgta agtgaggaat gccatcttca tgaagttctc 2460 tgcaaattcg gatgaatttc ttgtttacag gagttgatat agcgagtaat tgctccaaag 2520 cagcttcctt tgacagagtg catctgggat atgtaaggaa atagttcttt gcgtttatct 2580 tgaaacgact cgaatttgcc atattgcaag tcgtttttgt atcggtgtac accgattgcc 2640 ttatagcgcc tgttattggt gtattggagt cccatatata ggagtctcct aaaaccctct 2700 aacgggtcct cagaataata tt 2722 //