ID HM754263; SV 2; linear; genomic RNA; STD; VRL; 4247 BP. XX AC HM754263; HM149348; XX DT 20-SEP-2010 (Rel. 106, Created) DT 24-APR-2012 (Rel. 112, Last updated, Version 5) XX DE Velvet tobacco mottle virus strain K1, complete genome. XX KW . XX OS Velvet tobacco mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4247 RX DOI; 10.1007/s00705-010-0801-2. RX PUBMED; 20857308. RA Arthur K., Dogra S., Randles J.W.; RT "Complete nucleotide sequence of Velvet tobacco mottle virus isolate K1"; RL Arch. Virol. 155(11):1893-1896(2010). XX RN [2] RP 1-4247 RA Arthur K.R., Dogra S., Randles J.W.; RT ; RL Submitted (12-JUL-2010) to the INSDC. RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd, RL Adelaide, SA 5064, Australia XX RN [3] RC Sequence update by submitter RP 1-4247 RA Arthur K.R., Dogra S., Randles J.W.; RT ; RL Submitted (23-APR-2012) to the INSDC. RL School of Agriculture, Food and Wine, University of Adelaide, Waite Rd, RL Adelaide, SA 5064, Australia XX DR MD5; b4987b08d461ac2fea9e312111a00cee. DR EuropePMC; PMC3791421; 23830075. XX CC On Apr 23, 2012 this sequence version replaced gi:306991043. XX FH Key Location/Qualifiers FH FT source 1..4247 FT /organism="Velvet tobacco mottle virus" FT /host="Nicotiana velutina" FT /strain="K1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collection_date="1986" FT /db_xref="taxon:12473" FT 5'UTR 1..52 FT misc_feature 1..6 FT /note="ACAAAA motif" FT CDS 53..511 FT /codon_start=1 FT /product="P1" FT /db_xref="UniProtKB/TrEMBL:E2IZN0" FT /protein_id="ADN19013.1" FT /translation="MPSIDVEVEKILHLSNRKRLRSVCVARKKTFVDKISEGFVCTLYG FT EYDHDYVTSVHLHIVCSCGRAFFDFVEFKDIKLRDFQYQSQCICPTRNWSTVAYTDFTT FT VNCQVEGCDYCEGIESDSDSDSEAIIEEFLQKFSEVGISGSSSSPQTN" FT CDS 568..2286 FT /codon_start=1 FT /product="P2a" FT /note="polyprotein containing serine protease and VpG" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:E2IZN1" FT /protein_id="ADN19014.1" FT /translation="MLSELVQLCLSATMTLALVVSMMLDPSYGWLITMSVMLVSLELTI FT RPFRRSLDYMKIVVRDEPNEPEVARIVGAPTYHPIHGVVCKCLWNSKEFNVVVQPSLWP FT LAFPPNISQGVVKEGAMIGVPFTSLPSGAEPKSLVVLYNDGVRIGMGSRVNWQGADYLL FT TASHVWSLVTGDFQMAKASKMVSVKDAKCYVEAAHAKLDFALIKVPNKYWSSIGVGSAK FT LLWHKPGQVVKVYGGRSDELVSSVGRAEKDPDLSLRLTHNASTAPGWSGSPLYNSENFV FT VGLHTGFSAAEQRNEAVDVAKLLHLALRTKETTFSEIGVSLIDEDEIESRGYQFDDFEL FT RGEVNVKGKMARNEISLIASKNKGKPCYLQEEGDDEFYDSIREKDFLARFREQTGKETV FT GNLNCQRAAQTLEPPFENLRPCDGKNPELFKPAGWDSTMLESRLASLERALSTLLAEQS FT VLLSKFSQNSNSMIGQKEALKPSSIPSSSKPAVSGEPPVQSKPSVNAKSSLRSTPKVEP FT TVASGEKTSVNASSSGNKSKRRRRRRKSTTKPAPAPPGQDLKRPMVSSSPVSKTS" FT misc_feature 1770..1776 FT /note="-1 frameshift signal" FT CDS 1866..3512 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:E2IZN2" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:E2IZN2" FT /protein_id="ADN19015.1" FT /translation="MGFNYVGVSSCKFREGPKHAARGAISSAEQVFPELKQYDWPERGS FT KAEFDSLLLQASRFRRTSCPEQTERKCEVLAEKYPKSRAHRCFRRENFCQRQLLREQIE FT ATTTSPEINDKASPGSPWSRLEKTNGELISRFKDLLIEAVLRRVLLLASTPTSEILCMS FT ASDLVRANLVDPVRLFVKQEPHTKKKLNERRFRLISSVSIVDQIIERLLFGPQNRLEIA FT LWHQIPSKPGMGLSARTQADLLWNELFAKSEIAPAAEADISGFDWSVQEWELWADLSMR FT ISLCEDMHDGLRRLMVNRYRCFMLSCFQLSNGELYEQVEPGLMKSGSYCTSSSNSRIRC FT LMGYLIGAPWIIAMGDDSVEGYVRDAKGKYEELGHTCKEYELCDVDSDGALRSVNFCSH FT LISRNKFWLTSWPKTLYRFLDSPSENFHDLERELGSCPKWAKIKDYCCQVGLVPDKTYW FT EEDHPADYVEETHQESGQADDTGNLAERADFCSVPTTETPKVDAARAEFYSYGPNGWSC FT DIPEATHVNQWPLWGYSSSFGGGFGSPIWDY" FT misc_feature 3225..3230 FT /note="ACAAAA motif" FT CDS 3262..4107 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:E2IZN3" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E2IZN3" FT /protein_id="ADN19016.1" FT /translation="MSKKLTKNQVKQMIQATLPKEQTSARSRRRRRRRSTQQGQSSTVM FT APMAGAVIYRKRPMLINGRSGVTVRHSEVVLVVQSGTTNFSATSVTLAPNTFTWLAVQG FT SLYSKWRWISLRATYVPETASTTPGTVAMGFQYDNTDVLPTGTAGMSSLHGFVSGAPWS FT GFSGSKLLAESPTTPIPAGAIATRLDCQNFGLKWYQYKSVIPAGDSGNIYIPAQLIVGT FT LGTGSTLRYGEVHIQYEIEFIEPLPPSVNTLRDIYSRMILSSASDERKGEKSSQTLTDR FT " FT 3'UTR 4108..4247 XX SQ Sequence 4247 BP; 1081 A; 945 C; 1084 G; 1137 T; 0 other; acaaaatata ttgaagggaa agtcttgcac tcagtaccca ttatattttg atatgcccag 60 cattgatgtt gaagtagaaa agatcctgca cttgagcaac agaaagagac taaggtctgt 120 ctgtgtggcg aggaagaaga cgttcgtaga caagatatcc gaaggatttg tctgcactct 180 ttacggagag tacgatcacg actacgtcac cagtgtgcat ttgcacattg tttgctcgtg 240 cggtagagct ttctttgatt ttgttgagtt caaggacata aaactccgag atttccaata 300 tcaaagtcag tgtatctgtc ccaccaggaa ttggtcgacg gtcgcttaca ctgattttac 360 taccgtcaac tgccaagtgg aaggttgtga ttactgtgag gggattgagt cagactctga 420 ttcggattct gaggccatca tagaggaatt tcttcaaaag ttttccgagg ttggcatctc 480 tggatcgtcc agttctcccc agactaacta ggactcggtt ccgtttattt tcttacaaat 540 catttaattg ttttgtaatt gagaaagatg ttgagcgagt tagtccagtt gtgtctttca 600 gcaaccatga ctctagcgct ggtagtgtca atgatgctgg acccgagcta cgggtggctg 660 atcaccatgt ctgtgatgtt agtctcctta gagctgacaa tcaggccgtt caggcgctct 720 ctagactaca tgaaaattgt ggtccgagat gagcccaatg agcctgaagt tgctaggata 780 gtaggcgcgc caacttacca cccaattcat ggcgttgttt gcaagtgtct gtggaactcg 840 aaagagttca atgtggttgt gcaacccagt ttgtggcctc tagcctttcc cccaaacata 900 tcacaagggg tagtaaagga aggagctatg ataggtgtac cattcacatc cctaccctct 960 ggagctgaac caaagtctct cgttgtctta tacaacgatg gagtcagaat cggtatgggc 1020 tctagagtta attggcaagg cgcagattac ttgttgacag cctcccacgt ttggtctctc 1080 gtaactggtg attttcaaat ggcaaaagcc agtaagatgg tctcagtgaa ggacgccaag 1140 tgttatgttg aggctgctca cgctaagctg gactttgccc taattaaagt tccgaacaaa 1200 tattggagct cgataggggt tggttcggct aaattgttgt ggcataagcc cgggcaagtg 1260 gtcaaggttt acggaggtag atctgatgaa ttggtctctt ctgtgggccg agccgaaaag 1320 gatcctgatc tgagcctacg tctgacccat aacgcttcaa ctgctccagg atggagcggc 1380 tccccgcttt acaactctga aaatttcgta gtgggattgc atactggctt ttccgcggct 1440 gagcagagaa atgaggcggt tgatgtagcg aagttgctgc acctcgccct tagaacaaag 1500 gaaacgacgt tttcggagat cggtgtctct cttatcgatg aagatgagat tgagtctcgc 1560 ggttaccaat tcgacgactt tgagcttagg ggtgaggtaa acgttaaagg gaaaatggcg 1620 cggaatgaga tatctctcat cgcctctaag aataaaggga aaccttgcta tcttcaagag 1680 gaaggtgatg atgaattcta tgactcgatc cgtgagaaag atttccttgc ccgcttccgt 1740 gaacaaactg gtaaagagac agtggggaat ttaaactgcc agagggcggc ccaaacattg 1800 gagccgccct tcgagaactt gaggccgtgc gatgggaaga acccagagct attcaaaccg 1860 gcgggatggg attcaactat gttggagtct cgtcttgcaa gtttagagag ggccctaagc 1920 acgctgctcg cggagcaatc agttctgctg agcaagtttt cccagaactc aaacagtatg 1980 attggccaga aagaggctct aaagccgagt tcgattccct cctcctccaa gccagccgtt 2040 tccggagaac ctcctgtcca gagcaaaccg agcgtaaatg cgaagtcctc gctgagaagt 2100 accccaaaag tagagcccac cgttgcttca ggagagaaaa cttctgtcaa cgccagctcc 2160 tcagggaaca aatcgaagcg acgacgacgt cgccggaaat caacgacaaa gccagccccg 2220 gctccccctg gtcaagactt gaaaagacca atggtgagct catctcccgt ttcaaagacc 2280 tcttaattga ggcagtgttg aggcgagttt tattgcttgc ctccactcca accagtgaga 2340 ttttatgcat gtctgcttca gatctcgtta gagctaactt agtggatcct gtgcgattgt 2400 tcgtcaagca ggaaccccat acgaagaaga agctgaatga gcgtcgcttt aggcttattt 2460 cgtctgtgtc tatagttgat cagataatcg agagattatt gtttggtcct cagaacaggc 2520 ttgagatagc cttatggcat cagatacctt ccaaacctgg aatgggactg agcgctcgta 2580 cgcaagctga tttgttgtgg aatgagttat tcgcaaagag cgagattgcc cctgcggccg 2640 aggctgacat ttcaggattt gactggtctg tgcaggaatg ggagttatgg gccgatctga 2700 gcatgaggat ttctttgtgc gaagatatgc atgatggtct acggaggttg atggttaaca 2760 gataccgctg ctttatgctc tcttgcttcc aattgtcgaa tggggaattg tatgaacaag 2820 ttgagcctgg actcatgaag tctggttcct actgcacttc ctcttccaac tccagaatca 2880 ggtgcctaat gggttatcta attggagccc cctggataat agccatgggg gatgattctg 2940 ttgagggtta tgtgagagac gcgaaaggca agtatgagga attaggacac acttgtaagg 3000 aatacgagtt gtgtgatgtt gattcagacg gcgcgttgag atctgtgaac ttttgttcac 3060 atttgatttc ccgcaacaag ttttggctca caagctggcc taaaaccttg tacaggttcc 3120 tagactctcc ctctgaaaat tttcatgatc ttgaaaggga acttggctca tgtcccaagt 3180 gggccaagat aaaggattat tgttgtcagg taggactggt ccctgacaaa acatattggg 3240 aagaagatca ccctgctgac tatgtcgaag aaactcacca agaatcaggt caagcagatg 3300 atacaggcaa ccttgccgaa agagcagact tctgctcggt cccgacgacg gagacgccga 3360 aggtcgacgc agcaagggca gagttctaca gttatggccc caatggctgg agctgtgata 3420 taccggaagc gacccatgtt aatcaatggc cgctctgggg ttacagttcg tcattcggag 3480 gtggttttgg tagtccaatc tgggactact aacttctcgg ccacttctgt tactctcgcg 3540 cctaacactt tcacctggtt agctgtacaa ggatccctct attctaaatg gaggtggata 3600 tcgcttagag ccacgtatgt gcccgaaacc gcttctacga ctcccggaac tgtggcaatg 3660 ggtttccagt atgacaatac tgatgtccta cccactggaa ccgctggtat gtctagtttg 3720 catggttttg tgtcaggcgc tccgtggtca ggctttagtg gttctaaact cctcgctgaa 3780 agtcccacca ctcccatccc tgctggagca atcgcaactc gacttgactg tcaaaatttc 3840 ggtctcaaat ggtatcagta caagtctgtt atacctgctg gtgattctgg aaacatctat 3900 attccagctc agttgattgt cggtaccctg gggactggtt caactttgag atatggtgaa 3960 gtgcacatcc agtatgagat tgagtttatt gagccccttc ctccttcggt gaacactctc 4020 agagatattt actctaggat gatcctaagt tcggcgtcag atgaaaggaa aggtgagaag 4080 tctagtcaga ctttaactga ccgctaggca agcgatataa cgccaccatt gacgtctgga 4140 gagacttaaa tgggttttgc ataactactc cggttgctac gtcatagcac gttaccaaga 4200 agttctcttg gtccctctac atggttgggt gaacaccatg tgttcat 4247 //