ID HM640935; SV 2; linear; genomic RNA; STD; VRL; 3929 BP. XX AC HM640935; XX DT 13-MAR-2011 (Rel. 108, Created) DT 16-MAY-2018 (Rel. 136, Last updated, Version 9) XX DE Trailing lespedeza virus 1 isolate 06TGP01091, complete genome. XX KW . XX OS Trailing lespedeza virus 1 OC Viruses; Riboviria; Tombusviridae; Procedovirinae. XX RN [1] RP 1-3929 RX DOI; 10.1016/j.virusres.2011.06.023. RX PUBMED; 21762736. RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Ding T., RA Roe B.A.; RT "Detection of members of the Tombusviridae in the Tallgrass Prairie RT Preserve, Osage County, Oklahoma, USA"; RL Virus Res. 160(1-2):256-263(2011). XX RN [2] RP 1-3929 RX DOI; 10.1007/s00705-015-2425-z. RX PUBMED; 25913692. RA Adams M.J., Lefkowitz E.J., King A.M., Bamford D.H., Breitbart M., RA Davison A.J., Ghabrial S.A., Gorbalenya A.E., Knowles N.J., Krell P., RA Lavigne R., Prangishvili D., Sanfacon H., Siddell S.G., Simmonds P., RA Carstens E.B.; RT "Ratification vote on taxonomic proposals to the International Committee on RT Taxonomy of Viruses (2015)"; RL Arch. Virol. 160(7):1837-1850(2015). XX RN [3] RP 1-3929 RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Roe B.A.; RT ; RL Submitted (07-JUL-2010) to the INSDC. RL Biochemistry & Molecular Biology, Oklahoma State University, 246 NRC, RL Stillwater, OK 74078, USA XX RN [4] RC Sequence update by submitter RP 1-3929 RA Scheets K., Blinkova O., Melcher U., Palmer M.W., Wiley G.B., Roe B.A.; RT ; RL Submitted (13-MAY-2011) to the INSDC. RL Biochemistry & Molecular Biology, Oklahoma State University, 246 NRC, RL Stillwater, OK 74078, USA XX DR MD5; 2c2cc5f8ec2a6fcce7d86b6b27c154e3. XX CC On May 13, 2011 this sequence version replaced HM640935.1. XX FH Key Location/Qualifiers FH FT source 1..3929 FT /organism="Trailing lespedeza virus 1" FT /host="Lespedeza procumbens" FT /isolate="06TGP01091" FT /mol_type="genomic RNA" FT /country="USA:Tallgrass Prairie Preserve, Oklahoma" FT /lat_lon="36.83 N 96.39 W" FT /isolation_source="upper leaves" FT /collection_date="03-Jun-2006" FT /db_xref="taxon:944580" FT CDS 27..2339 FT /codon_start=1 FT /transl_except=(pos:771..773,aa:OTHER) FT /product="putative RNA dependent RNA polymerase" FT /db_xref="GOA:F1BA29" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:F1BA29" FT /protein_id="ADY69093.3" FT /translation="MFRDLCRYASQIVVGSTVLAVNVSVLSVAVQLRGAVAVYEVASKC FT VTALEDCVSDLRDSLKPVPDELYNPSLCAALRMNNTDTELTAEDLLTTDRVLVNTWETD FT EAKFKYRYKARIQSGQRGRFMYELVAYGKNHFGRAPRCCDSNYLSVTRLLVNRCNELHL FT TPTQTRNVVAEAVSLVFIPDEEEIRQTMLTNSHYAYMQRTRQSVVSTVEPWWKELLLGP FT SNAKNWRRAWIEICGLPEKQAISFAKXGCLWRTRGVTTNIFRAHHPDVTECHEANVHVR FT DTYLYGARLTNGLKIGVHRNDFPNLRRGVMERVYYVENSETKQLQSPITPVDGIYRSMK FT YIRLKLGGYIGLHSRTPMQKCVDMYKGRKRRTYQRAMDECKLEPFNPRWAHVKNFLKRE FT KLNLSAKPDPAARIISPRDPRYNIHLACYLKPFEHHLYRAIDNLWGQPTVMKGYTVEEV FT GQLFHRSWSAFRKPVAVGFDMKRFDQHVSVAALQFEHAVYLQAFGYDAHLQRMLSLQLN FT NMCNAYCKNGKLRYNKMGTRMSGDLNTSCGNVLLACAITYDICKRIGLKAHLLNNGDDC FT VLILESEDLPRVEILDTLWAEYGFVCIVEKPVFEIEEIEFCQMHPVFANSGYVMVRNPH FT VSIAKDQHSLIPWTNVKVAKQCLKAIGECGSSLTSGIPMVHAFYQCLLRNTSDVRINPN FT LREASAAAYFGMGGRTRGTHSISERTRYSFYLAFGITPDEQRAFEDDWERETIVWEWAP FT DGFVAANHACLQLISQS" FT CDS 27..773 FT /codon_start=1 FT /product="putative replication-associated protein" FT /db_xref="UniProtKB/TrEMBL:F1BA30" FT /protein_id="ADY69092.2" FT /translation="MFRDLCRYASQIVVGSTVLAVNVSVLSVAVQLRGAVAVYEVASKC FT VTALEDCVSDLRDSLKPVPDELYNPSLCAALRMNNTDTELTAEDLLTTDRVLVNTWETD FT EAKFKYRYKARIQSGQRGRFMYELVAYGKNHFGRAPRCCDSNYLSVTRLLVNRCNELHL FT TPTQTRNVVAEAVSLVFIPDEEEIRQTMLTNSHYAYMQRTRQSVVSTVEPWWKELLLGP FT SNAKNWRRAWIEICGLPEKQAISFAK" FT CDS 2312..2515 FT /codon_start=1 FT /product="putative movement protein 1" FT /db_xref="GOA:F1BA31" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:F1BA31" FT /protein_id="ADY69094.1" FT /translation="MSTVDKPIIEVGLPQTNIVEDTATKRGRTKNGRAVALKGIDSHST FT GSAIGGITIVAETVSVVNHFNF" FT CDS 2412..2651 FT /codon_start=1 FT /product="putative movement protein 2" FT /note="CTG start codon" FT /db_xref="GOA:F1BA32" FT /db_xref="UniProtKB/TrEMBL:F1BA32" FT /protein_id="ADY69095.1" FT /translation="MSHSRGLIHTLLVLLLVVSLLWLKQYRWSITLTFDSSLNRVIALA FT LLGAVLTSVGNSSTVYYINNSTNENKTNHIKIET" FT CDS 2648..3688 FT /codon_start=1 FT /product="putative coat protein" FT /db_xref="GOA:F1BA33" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F1BA33" FT /protein_id="ADY69096.1" FT /translation="MNGISQNDPKVVKAAEAGIPWAIKLRSRGWRSLRTNQKLAARAFV FT GSSAPSVAIVPRVTRLVRGNPQRTRRNPQQPGNAADSTTITKSDFVADVIGNTTEAGTV FT TSWLINPSNVVAFPSLLNESARWEKYKITKFSIRFSSKCSEYTDGGVVVQFASDSTDAV FT PTSKYGIMQSQCRADASAHGSVLLNCAVDPKVRFVRDSSADSGKVVDYGRVNLCAYGQK FT AADPSIIGELFFEYTIVFSEARVNRGVTQYQYLLTDSVDGPSFASVTSTSAELTFTFNL FT PGKYTFICSFTGTVSGLYAADLTYNWSVDNTTAVAGVVTVTSPGATLSWAIGATVTSLL FT WQCNIF" XX SQ Sequence 3929 BP; 1040 A; 884 C; 1019 G; 986 T; 0 other; ggtatctgtt tgccgacaat accacgatgt ttcgcgattt gtgccgatac gctagtcaga 60 tagtggttgg tagcacagtg ctggctgtga atgttagtgt tttgtccgta gctgtacaac 120 ttcggggtgc agtggcggtc tatgaagtgg ccagtaaatg tgtgacagcg ctggaagact 180 gcgtttccga tcttcgtgat tcgctgaagc cagttcccga cgagctgtac aatccttcct 240 tgtgtgcggc tctgcgtatg aataacactg acacagaact aacagctgaa gaccttttaa 300 ccacagacag agttttggtc aacacttggg aaaccgatga ggccaaattc aaatataggt 360 acaaggcgag aatacagagc gggcagcgtg ggaggtttat gtatgagctt gtagcatatg 420 gcaagaacca cttcgggcgg gcgccgagat gttgcgatag caactatctt agtgtcactc 480 gattgctggt aaaccgatgc aatgagctac acttgacccc cactcaaacg cgcaacgttg 540 tagctgaggc ggtgtcttta gttttcattc ctgatgagga agaaatccgc cagaccatgc 600 taacaaattc acattatgct tacatgcaac gcacccggca gagcgttgta tccaccgtcg 660 aaccgtggtg gaaagagctg ttgcttggtc cgtctaacgc taaaaattgg cgacgagctt 720 ggatcgaaat ctgtggattg cctgaaaaac aggcgatctc cttcgctaaa taggggtgcc 780 tctggcgcac acggggtgta actactaaca tatttagggc acaccacccc gatgtcactg 840 agtgccacga ggctaatgtt cacgttaggg atacttacct gtacggcgca cgattgacga 900 atggcctgaa gattggggtg catcgcaatg attttcccaa ccttcggcga ggcgtcatgg 960 agcgcgtgta ctatgtagaa aacagtgaaa caaaacaatt gcagagccct ataacacccg 1020 tcgatggtat ttatcggagc atgaaataca tccgtctaaa actcggagga tacatcggtc 1080 ttcattcccg gacacccatg cagaaatgtg tggatatgta caagggcagg aagcggcgta 1140 cttaccaaag agcaatggat gaatgtaaac ttgaaccgtt caatcctcga tgggcgcacg 1200 ttaagaactt tcttaaacgt gagaaattga acttatctgc aaaacctgac ccggcagcaa 1260 gaattatcag tcctagagat cctaggtaca acatacactt ggcgtgttac cttaaacctt 1320 ttgagcatca tctgtaccgc gccatagaca atctctgggg ccaacctacg gtaatgaaag 1380 gctacacagt tgaagaggtt gggcaactat ttcatcgatc gtggagtgca ttccgcaaac 1440 ctgttgcagt cggattcgat atgaaacggt tcgaccaaca cgtaagcgtt gccgctttgc 1500 agtttgagca cgctgtatac ttacaggctt ttggttacga tgctcacttg caaagaatgc 1560 tatcactgca gcttaacaat atgtgcaatg catattgtaa gaatggcaaa ctgagatata 1620 ataaaatggg aacccgaatg agtggcgatc tgaatacgag ttgcggaaac gtgttgttag 1680 cttgtgctat cacttacgac atttgcaagc gcattgggct gaaagcacat ctacttaaca 1740 atggggatga ttgtgttcta atactagaaa gcgaagacct gcctcgtgtc gagatccttg 1800 atacattgtg ggctgaatac ggattcgtgt gtatagtgga gaaaccagtc ttcgaaattg 1860 aagagataga attttgccag atgcaccctg tatttgcgaa tagtgggtac gtgatggtgc 1920 gcaatcctca tgtgagcatc gccaaggacc aacactcgct aatcccatgg actaatgtca 1980 aagttgccaa acagtgcttg aaagctatag gtgaatgtgg tagtagtctc acgagcggca 2040 tcccgatggt ccatgcattt taccaatgct tgctgcgtaa tactagcgac gtgcgtatta 2100 atccaaatct acgtgaggct agtgcagcgg catattttgg gatgggagga cgaacccggg 2160 gcacacacag catcagtgaa cggacccgat acagcttcta tctggcgttt ggaatcaccc 2220 ctgatgaaca acgcgcattt gaagacgatt gggaaaggga aactattgtc tgggagtggg 2280 cccccgacgg atttgttgcc gcaaaccacg catgtctaca gttgataagc caatcataga 2340 agtaggtcta ccgcaaacta acatagtaga agacacagca accaagcgag gtaggacaaa 2400 gaacggacga gctgtcgcac tcaaggggat tgattcacac tctactggtt ctgctattgg 2460 tggtatcact attgtggctg aaacagtatc ggtggtcaat cactttaact tttgattctt 2520 cactcaaccg tgtaattgct ctagccctct tgggcgctgt attaactagc gtaggtaatt 2580 ctagcaccgt atattacatt aataatagta ccaacgagaa caagacaaac cacatcaaaa 2640 ttgagacatg aacggcattt cacaaaatga tcctaaagtt gttaaggctg cagaagctgg 2700 aataccgtgg gctattaaac tgcgttctcg cggttggcgt agtctgcgta ctaaccagaa 2760 gcttgcagct cgcgcttttg tggggtctag tgctccgagt gttgctattg tcccacgagt 2820 tactcgactc gttcgaggta acccgcaaag gactcgtcgc aatcctcaac aaccaggcaa 2880 cgctgctgac agtactacga tcacaaaatc agattttgtc gcagacgtta tcggcaatac 2940 aacagaggca ggaaccgtca cctcatggct gatcaatcca tcaaacgtgg tggcgtttcc 3000 ttcattactc aatgagagtg cccgctggga aaagtacaag atcacgaagt tcagcattag 3060 attcagttcg aaatgcagcg aatacaccga tggaggtgtg gttgtccagt tcgcgtcgga 3120 tagtacagac gccgttccaa cgagcaagta cggcattatg cagtcgcagt gtcgagcaga 3180 tgcaagcgcc cacggctcag tgctccttaa ctgtgctgtt gatccgaagg tgcggtttgt 3240 gcgagactct agtgcggata gtgggaaagt cgttgactac ggtcgcgtca atctttgtgc 3300 gtatggtcag aaagcagcgg atccttctat tataggtgag ctgttctttg agtacaccat 3360 cgtgtttagt gaggcgcggg tgaatcgcgg cgtcactcaa tatcagtact tgctgactga 3420 cagtgtcgac gggccgtcgt ttgcgagcgt cacgagcacg tctgctgagc tgacatttac 3480 atttaatctg cctggcaaat acacgttcat atgttctttc accggaacag tgagcgggtt 3540 gtatgctgca gatctaacgt ataactggag cgtagataac accactgcag tggctggtgt 3600 cgtaacggta acatcgcctg gcgcaacact tagttgggcc attggagcaa ctgttacgag 3660 cctgttgtgg cagtgtaaca tcttttagag tagactattc gggtagagaa cgcgttgaga 3720 catggttaaa gggccccggc aagggtaatg gcatcgctgg cgcgttcatg ggtatcccca 3780 ctggtggtgg gcgtgtataa actctctgat ctccaggaca cgctggagaa cgtacctgca 3840 taaaatcttg gagctggacc aagtgggctt gttaggtact ccctagactt tgtcttaaag 3900 ggaaccgtgt gactcggttc tccttgccc 3929 //