ID HM627182; SV 1; linear; viral cRNA; STD; VRL; 12146 BP. XX AC HM627182; XX DT 03-MAY-2012 (Rel. 112, Created) DT 03-MAY-2012 (Rel. 112, Last updated, Version 1) XX DE Farmington virus, complete genome. XX KW . XX OS Farmington virus OC Viruses; Riboviria; Negarnaviricota; Haploviricotina; Monjiviricetes; OC Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae. XX RN [1] RP 1-12146 RA Palacios G., Savji N., Bussetti A.V., Lipkin W.; RT "Genetic Diversity of Rhabdoviruses"; RL Unpublished. XX RN [2] RP 1-12146 RA Palacios G., Savji N., Bussetti A.V., Lipkin W.; RT ; RL Submitted (03-JUL-2010) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 West 168th RL Street, New York City, NY 10032, USA XX DR MD5; a54e6caaebebbea8127048d4ad237747. DR EuropePMC; PMC4257811; 25419624. XX FH Key Location/Qualifiers FH FT source 1..12146 FT /organism="Farmington virus" FT /host="ring-necked pheasant" FT /mol_type="viral cRNA" FT /country="USA" FT /collection_date="1969" FT /db_xref="taxon:1027468" XX SQ Sequence 12146 BP; 3158 A; 3285 C; 2989 G; 2714 T; 0 other; gagacccttc acgggtaaat ccttctcctt gcagttctcg ccaagtacct ccaaagtcag 60 aacgatggct cgtccgctag ctgctgcgca acatctcata accgagcgtc attcccttca 120 ggcgactctg tcgcgggcgt ccaagaccag agccgaggaa ttcgtcaaag atttctacct 180 tcaagagcag tattctgtcc cgaccatccc gacggacgac attgcccagt ctgggcccat 240 gctgcttcag gccatcctga gcgaggaata cacaaaggcc actgacatag cccaatccat 300 cctctggaac actcccacac ccaacgggct cctcagagag catctagatg ccgatggggg 360 aggctcattc acagcgctgc ccgcgtctgc aatcagaccc agcgacgagg cgaatgcatg 420 ggccgctcgc atctccgact cagggttggg gcctgtcttc tatgcagccc tcgctgctta 480 catcatcggc tggtcaggaa gaggagagac tagccgcgtg cagcagaaca taggtcagaa 540 atggctgatg aacctgaacg caatcttcgg caccacgatc acccatccaa caaccgtgcg 600 tctgccaatc aacgtcgtca acaacagcct cgcagtgagg aacggacttg ctgccacact 660 ctggctatac taccgttcat cacctcagag tcaggacgcg ttcttctatg ggctcatccg 720 tccctgttgc agtggatatc tcggcctgct acatcgggtg caggagattg atgagatgga 780 gccggacttc ctcagtgacc cccggatcat ccaggtgaat gaggtctaca gtgcactcag 840 agccctggtt caactgggaa acgacttcaa gaccgccgat gatgagccca tgcaggtctg 900 ggcgtgcagg ggaatcaaca acggatatct gacatatctc tcagaaactc ctgcgaagaa 960 aggagctgtt gtgcttatgt ttgcccaatg catgctgaag ggcgactctg aggcctggaa 1020 cagctaccgc actgcaacct gggtgatgcc ctattgcgac aatgtggccc taggagcgat 1080 ggcaggctac atccaagccc gccagaacac cagggcatat gaggtctcag cccagacagg 1140 tctcgacgtc aacatggccg cggtcaagga ctttgaggcc agttcaaaac ccaaggctgc 1200 tccaatctcg ctgatcccac gccccgctga tgtcgcatcc cgcacctctg agcgcccatc 1260 tattcctgag gttgacagcg acgaagagct cggaggaatg taaaccaata agcttcactg 1320 ccggtagttt aggcatacac acgcagttcc gttatccatc acacccgtcc cttcttttat 1380 gctgctatta tttcagttgc taagcttcct gatttgatta acaaaaaacc gtagacctcc 1440 tacgtgaggt atagctagaa attggttcta tcggttgaga gtctttgtac tattagccat 1500 ggaggactat ttgtctagct tagaggccgc gagagagctc gtccggacgg agctggagcc 1560 caagcgtaac ctcatagcca gcttagagtc cgacgatccc gatccggtaa tagcgccagc 1620 ggtaaaacca aaacatccca agccatgcct gagcactaaa gaagaggatc atctcccctc 1680 tcttcgccta ctattcggcg caaaacgaga cacctcggtg ggcgtagagc agactctcca 1740 caagcgtctc tgcgcttgtc tcgacggtta cctgaccatg acgaagaaag aggccaatgc 1800 ctttaaggcc gcggctgaag cagcagcatt agcagtcatg gacattaaga tggagcatca 1860 gcgccaggat ctagaggatc tgaccgctgc tatccctagg atagaattca aactcaatgc 1920 catcctggaa aacaacaagg agatagccaa ggctgtaact gctgctaagg agatggagcg 1980 ggagatgtcg tggggggaaa gcgccgccag ctcgctcaag tctgtcaccc tagatgagtc 2040 gtttaggggc cctgaagagc tttcagagtc atttggcatc cgatataagg tcagaacctg 2100 gaatgagttc aagaaggcgc tggaaaccag cattgtggac ctgaggccta gccctgtttc 2160 atttagggaa ttacggacta tgtggctgtc tcttgacacc tcctttaggc tcattgggtt 2220 tgccttcatt cccacatgcg agcgcctgga gaccaaagcc aaatgcaagg agacaaggac 2280 tctactcccc cttgcagagt cgatcatgcg aagatgggac ctgcgggatc caaccatctt 2340 ggagaaagcc tgcgtagtaa tgatgatccg tgggaatgag attgcatcgc tgaatcaggt 2400 aaaagatgtt ctcccgacca caattcgtgg gtggaagatc gcttattagt cactgctccc 2460 attagtccca ctagacggca tacttccatt ccgcccttta attcccctgt cagacactca 2520 tgctccgaaa tcactaacca tccttgtcca ccaagcaata cgcatattca gtagcactgc 2580 atctcgccct ccccctatca agccccagcg ctgcagatct tcaccacata tatacatgca 2640 tcaactacat gtgatttaga aaaaaccaga cccttcacgg gtaatagcct aactcacgaa 2700 cgttcctctc gtttcgtatg ataaggcctt aagcattgtc gatacggtcg ttatgcgtcg 2760 gttcttttta ggagagagca gtgcccctgc gagggactgg gagtccgagc gacctccccc 2820 ctatgctgtt gaggtccctc aaagtcacgg gataagagtc accgggtact tccagtgcaa 2880 cgagcgtccg aaatccaaga agaccctcca cagcttcgcc gtaaaactct gcgacgcaat 2940 taagccggtt cgagcggatg ctcccagctt gaagatagca atatggacgg ctctagatct 3000 ggccttcgtg aaacctccca atggaactgt aacaatagat gcggcggtga aagctacacc 3060 gctaatcggg aacacccagt acaccgtagg cgatgaaatc ttccagatgc tagggagaag 3120 gggtggcctg atcgtcatca ggaacttacc ccatgattat cctcgaacgt tgattgagtt 3180 cgcctctccc gagccttgag caccagggca tcggtccgcc cgccctgtga tctcccgtag 3240 ccgggctcag cgatcaagcc ggcccgggtc gggggggact ggtgcaacac aaggggcggc 3300 agtggacgct gattaacaaa aaaccaccta tatagacccc tcacggtctt agactctgtt 3360 gccagctgac aaccaacaca caagacatct ctctgattca gccgacccga tcgattcctc 3420 cccacccaat tcctaccaac gcactcctca caagctccac catgctcagg atccagatcc 3480 ctccgattgc tatcattctg gtaagtctcc tcacactcga cctgtccggt gcaaggagga 3540 caaccacaca aagaatccct ctccttaatg attcgtggga tttgttctcg agctatggcg 3600 acattcccga agaacttgtc gtataccaga actacagcca caattcctcc gagttacccc 3660 ctcctggctt cgagagatgg tacataaacc gaagagtggc agacacttcc ataccgtgca 3720 ggggcccctg tctagtgccc tacatccttc atggcctcaa tgacacaact gtctctcgac 3780 ggggaggagg atggcgaagg tccggaatga agtacccaac ccacgctgtc aggctaggcc 3840 cttcaacaga cgacgagaga gttgaggaag acatcggcta cgtcaatgtc tccgcactat 3900 cctgcacagg gtcgcccgtt gagatggcga taccaacaat ccccgactgc accagtgcta 3960 tccatccacg atccgaggtt actgtgcccg tcaagctcga tgtcatgaga cgaaatccca 4020 actaccctcc cattagagcg tggtcgtgca tcggacagaa aatcaccaac cgatgtgatt 4080 gggcactctt cggcgagaac ctcatatata ctcaagttga agctagctct ctagcattca 4140 agcacacaag agcctctctt ttgaacgaat ccaacgggat agacgctgaa ggacgtgcag 4200 ttccctatat cctcggggat atcgaacccg ggtactgccg aaccctattc aacacatggg 4260 tctctagtga gatcgtgtca tgcacgccca tcgaacttgt cctagttgac ctgaaccctt 4320 tgtccccggg acatggcgga tatgctgtat tgctgccaaa cggagacaaa gtggatgtac 4380 acgacaagca tgcatgggat ggggacaaca aaatgtggag atgggtgtac gagaagaaag 4440 atccctgtgc gttcgagctg gtatccaggg aagtgtgtct tttctcactg agtaggggta 4500 gtagactgag aggagcaacc cctccccaag gagagctcct cacctgcccg cattcgggaa 4560 aggcatttga cctgaagggg gcccgaagga ttacacccat ttcatgcaaa atcgacatgg 4620 aatatgactt gctgtcacta ccaaccggag tcatcctagg cctccaccta tcagaactcg 4680 ggacctcctt tggcaacctc tcaatgagtc ttgaaatgta tgaacctgcc acaactctga 4740 cccctgagca aatcaacttc tcgcttaaag agctgggaag ctggaccgag gctcaactga 4800 agagcctgtc tcactcaatc tgcctctcca cattctccat atgggaacta tcggttggga 4860 tgatcgatct aaaccctacc agggcagcaa gggccttgct ccatgatgat aacatactgg 4920 caacattcga gaacggtcac ttttccatcg tcagatgtcg tccggaaata gttcaagtcc 4980 cttcgcatcc tcgagcatgt cacatggatc tccgccctta tgacaagcaa tcacgggcat 5040 caaccctggt ggttcccctt gacaacagca ctgccctcct ggtccccgac aacatcgtgg 5100 ttgaaggagt agaggccagt ctatgcaacc actccgttgc catcacgctg tcgaagaaca 5160 gaactcactc atacagcctc tatccccagg gtcgtcctgt gcttcgacag aaaggtgccg 5220 tggagctccc gacgataggg cccctccagt tacatcctgc cactcgagtg gacctttata 5280 cactgaaaga gttccaggag gaccgaatag cgcacagtcg agtcacagac atcaaggctg 5340 ccgttgacga tctgcgtgcg aagtggcgta aaggcaaatt tgaggcggac accacgggag 5400 ggggactttg gtcggcgatt gtgggagtct tcagttctct cggggggttc ttcatgaggc 5460 ccttgattgc tctcgcggcg atagtgacct caatcatcat cctgtatatc cttctgcgtg 5520 tactgtgtgc tgcctcatgt tcgacacacc gaagagtaag gcaggactct tggtaaagag 5580 gactgcgatt gttgagtgga caaaccctag gcctattccg atttagaaaa aaccagacct 5640 ctcacgaggt cttttctact agctgggttt tcctcattct atccagagcc atggccttcg 5700 acccgaactg gcagagagaa ggttatgaat gggatccgtc aagtgagggc agaccgaccg 5760 atgagaacga agacgacaga ggtcatcggc caaaaacgag acttcgtaca ttccttgccc 5820 gcacgttaaa tagccctatc cgagccctat tctacacaat attcctagga attcgagcgg 5880 tttgggacgg gttcaaaaga ctcctacctg tgaggaccga aaagggttat gcgaggtttt 5940 ctgagtgcgt cacatatgga atgatcggat gtgatgagtg tgtaatagac ccggtgaggg 6000 ttgtcattga gctgaccgag atgcagttac cgattaaagg caaaggctct acgaggttga 6060 gagcaatgat aactgaagac cttctcacgg ggatgcgcac agccgtgcct cagatcagag 6120 tgagatcgaa gatcctagca gagcggttag ggagagcaat cggccgagag accttgccgg 6180 caatgatcca tcatgagtgg gcatttgtga tggggaagat tctcactttc atggcagaca 6240 atgtgggtat gaacgctgac acggtcgagg gcgttctatc actatcagag gtcacacggc 6300 gatgggatat cggcaactct gtgtccgcag tgttcaatcc tgatggcctt actatcagag 6360 tagaaaacac gggttacatc atgaccagag agactgcctg catgatcgga gacattcatg 6420 ctcaatttgc aatccaatac ctagctgcat acctagacga ggtgatcggc acaaggacgt 6480 ctctctcacc cgccgaactg acctctctca aactatgggg acttaacgtc ctgaaactcc 6540 taggacggaa cggttatgag gtgatcgcct gcatggagcc catagggtac gctgtcctga 6600 tgatgggaag agacaggagt cctgatccct atgtcaatga cacctattta aacagcatcc 6660 tctcagaatt ccctgtcgac tctgacgctc gagcctgcgt tgaagccctc ttaactatct 6720 atatgagctt cggcacaccc cataaagtct cggacgcatt cggcctcttc agaatgttgg 6780 gacatccgat ggttgatgga gctgacggga ttgaaaagat gcgaaggtta agcaagaagg 6840 tcaagatccc agaccagtct acagcgatcg acctcggggc tatcatggcc gaactgtttg 6900 tgcggagttt cgtaaagaag cacaaaaggt ggcccaactg ctccatcaat ctcccgccac 6960 gacacccctt ccaccacgcc cgcctatgtg ggtatgtccc ggctgaaacc catcccctaa 7020 acaacactgc atcctgggcg gctgtggagt tcaaccagga attcgagccg ccgagacagt 7080 acaaccttgc agacatcatt gatgacaagt cgtgctctcc caacaagcat gagctatatg 7140 gtgcttggat gaagtcaaaa acagctgggt ggcaggaaca aaagaagctc atactccgat 7200 ggttcactga gaccatggtt aaaccttcgg agctcctgga agagattgat gcacacggct 7260 tccgagaaga ggataagttg attggattaa caccaaagga gagagagctg aaattaacac 7320 caagaatgtt ctccttgatg acattcaagt tcagaaccta ccaagtcctc actgagagta 7380 tggtcgccga tgagatcctc ccgcacttcc cccagatcac catgaccatg tccaaccacg 7440 aactcacaaa gaggttgatt agcagaacga gacctcaatc tggaggaggg cgtgatgttc 7500 acatcaccgt gaacatagat ttccagaaat ggaacacaaa catgagacac ggactggtca 7560 aacatgtctt cgagcgactg gacaacctct ttggcttcac caacttaatc agacgaactc 7620 atgaatactt ccaggaggcg aaatactatc tggctgaaga tggaactaat ctgtcgttcg 7680 acaggaacgg ggagttaata gatggcccat acgtttacac cggatcatac ggggggaacg 7740 aggggttacg acagaagccc tggacaatag ttaccgtgtg tggaatatac aaggtagcta 7800 gagacctgaa aatcaaacat cagatcaccg gtcagggaga taatcaggtg gtcaccctaa 7860 tatttccgga tcgagagttg ccttcagatc cggtggagag gagcaagtac tgtagagaca 7920 agagcagtca gttcctgaca cgtctcagtc aatatttcgc tgaggttggt ttgcccgtca 7980 agactgaaga gacatggatg tcatcacgtc tctatgctta cggtaagcgc atgttcttag 8040 agggagttcc acttaagatg tttctcaaga agataggcag agctttcgcc ctctcgaatg 8100 agtttgtccc gtccctcgag gaagatctgg ccagagtctg gagtgccacc agcgcagcgg 8160 tagagcttga cctaactccc tacgtaggat atgtcctcgg gtgctgcttg tctgcgcagg 8220 cgatcagaaa tcacctcatc tactcccctg ttctggaggg ccctctgctg gttaaggcct 8280 acgagcgtaa gttcattaac tacgacggag gaacaaagcg gggggcgatg cccggcctac 8340 gtccaacctt tgagagccta gtcaaaagta tctgctggaa gccaaaggcc atcggagggt 8400 ggccggtatt gatgttagaa gatctcatca tcaaagggtt ccctgatccg gcgactagcg 8460 ccctggctca attgaagtca atggtgccat atacctctgg tatcgaccgg gagatcatac 8520 tttcctgtct caaccttccc ttatcgtcgg tggtatctcc gtcaatgttg ttaaaggacc 8580 cggcggccat caacaccatc acaaccccgt ccgcgggcga catcctgcaa gaggtcgcca 8640 gagactatgt taccgattac ccactccaaa acccgcagct cagagcagtg gtcaagaacg 8700 tgaagaccga gctagacaca ttggccagtg acttattcaa atgtgaacct ttctttcctc 8760 ctttaatgag cgatatcttc tcggcatctc tcccggcata tcaagacagg attgttcgca 8820 agtgctccac gacttctaca atcaggagaa aagctgccga gaggggctcc gactctctcc 8880 tcaaccggat gaaaaggaat gagatcaata agatgatgtt acatctttgg gctacctggg 8940 gaaggagccc tctggccaga ttagacacca gatgtctcac aacctgcacc aagcaattag 9000 cccaacagta tcggaaccag tcttggggaa agcagatcca tggagtctca gtcggccacc 9060 ccttagaact gttcggtcga ataacaccca gccatagatg cctacatgag gaggaccacg 9120 gagatttcct gcaaaccttc gccagcgagc atgtgaacca agtggacacc gacatcacca 9180 caactctggg gccgttctac ccttacatag gctcggagac gcgagaacgg gcagtcaagg 9240 ttcgaaaagg agtgaattac gtagttgagc cgcttctgaa acccgcagtt cgactactaa 9300 gagccattaa ttggttcatt cccgaggagt cagatgcgtc ccatttgctg agcaatctat 9360 tagcgtctgt taccgacatc aatcctcaag accactactc atctaccgaa gtaggggggg 9420 gcaacgccgt ccatcgctac agctgccgac tatccgacaa attgagcaga gtcaacaact 9480 tatatcagtt gcatacttat ttatctgtca caacagagcg gttgaccaag tacagtcgag 9540 gatcaaaaaa cactgacgca cacttccaga gcatgatgat ttatgcacaa agccgtcata 9600 tagacctcat cttggagtct ctgcacaccg gagagatggt accgttggag tgtcatcatc 9660 acattgagtg caatcactgt atagaggata tacccgacga gccaatcacg ggggacccgg 9720 cttggactga agtcaagttt ccttcaagtc ctcaggagcc ctttctttac atcaggcaac 9780 aagatctgcc ggtcaaagac aaactcgagc ctgtgcctcg catgaacatc gtccgtcttg 9840 ccggattggg tccggaggcg attagtgagc tagcgcacta ctttgttgca ttccgagtta 9900 tccgggcgtc agagacggat gtcgacccta acgatgttct ctcgtggacc tggctgagcc 9960 gaattgatcc tgacaaattg gttgagtata tcgtgcatgt gttcgcttca ctggaatggc 10020 atcatgtatt aatgtcaggc gtgagtgtga gcgtcagaga tgcattcttt aagatgctag 10080 tgtctaaaag aatctcagag actccgctaa gttcattcta ttatctggcc aacctgttcg 10140 ttgaccctca gactcgcgaa gcactaatga gctctaaata cgggttcagc ccccccgccg 10200 agacagtccc caacgcaaat gccgccgcag ccgaaataag aagatgctgt gcgaacagtg 10260 cgccgtcgat cttagaatca gcccttcaca gccgtgaggt tgtttggatg ccaggaacga 10320 acaattatgg agacgttgtc atctggtctc attacattag attacggttc agcgaagtta 10380 aactagttga cattacacga tatcagcagt ggtggagaca gtctgagcga gacccctacg 10440 atttggtccc ggacatgcag gttcttgaga gcgacctaga tacgctgatg aaacggatac 10500 cgaggctcat gcgcaaggcg agacgtcccc ctcttcaggt aattcgagag gacctggatg 10560 tcgcagtcat caatgctgat catcccgctc actctgtgct tcagaacaaa tacaggaaat 10620 tgattttcag agagccgaag attatcacgg gagctgtgta caagtacctc tccctaaaat 10680 cagagttgac agagttcacc tcagcaatgg tgatcggaga cggaactgga ggtatcaccg 10740 ccgccatgat ggccgatggg atagatgtgt ggtatcagac gctcgtcaac tatgaccacg 10800 tgacacaaca gggattatcc gtacaagccc cggcagcatt ggatcttctg cgcggggcac 10860 cctctggtag gctcttgaat ccgggaagat tcgcatcatt tgggtctgac ctaactgacc 10920 ctcgatttac agcctacttt gatcaatatc ccccgttcaa ggtggacact ctatggtctg 10980 acgcagaggg cgacttttgg gacaagcctt ccaagttgaa tcaatacttt gagaacatca 11040 ttgctttgag acatcggttc gtgaagacaa atggacagct tgtcgtgaag gtgtatctga 11100 ctcaagacac tgctaccaca attgaagcat tcagaaagaa gctgtcccca tgcgccatca 11160 tcgtgtctct cttctcgacg gaaggctcca cagaatgctt cgtcctaagc aatctcatcg 11220 caccagacac ccctgtcgac cttgagatgg tggagaatat ccctaaacta acatcccttg 11280 ttccccagag gacgacagtg aaatgctatt cccgacgagt agcgtgcatc agtaaaaggt 11340 ggggactttt cagatctccg agcatagccc ttgaagtcca accgttcctt cactacatca 11400 caaaggtcat ctcagacaaa ggaacacaac tgagtctcat ggcggtagct gacacaatga 11460 tcaacagtta caagaaggct atctcacccc gagtgttcga tctacaccgg catagggccg 11520 cactgggttt cgggaggaga tccttgcatc tcatctgggg gatgatcatc tcaccaatcg 11580 cttaccagca ttttgagaat ccggccaagt tgatggatgt cctggacatg ttgaccaata 11640 acatctcagc tttcttatcg atatcgtcgt caggatttga cctgtcattt agtgtcagtg 11700 cagaccgaga tgtccggatt gacagcaaac ttgtcagact cccgctattc gaaggatcag 11760 acctaaaatt catgaaaacc atcatgtcta ccctcggatc tgtgttcaac caggtcgagc 11820 cttttaaggg gatcgccata aacccttcta aactaatgac tgtcaagagg acacaggagt 11880 tacgttacaa caacctaatt tacactaagg atgccatcct attccccaat gaagcggcaa 11940 aaaacactgc cccgcttcga gccaacatgg tataccccgt ccggggagat ctattcgccc 12000 ctaccgatcg cataccaatc atgactctag tcagcgatga gacaacacct cagcactctc 12060 ctccagagga tgaggcataa ctgaatcctc cctgaaggct cacatgtccc acgcgacgca 12120 agatataacg acaagcaact cgccct 12146 //