ID HM626516; SV 1; circular; genomic DNA; STD; VRL; 2628 BP. XX AC HM626516; XX DT 22-MAY-2011 (Rel. 108, Created) DT 22-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Chenopodium leaf curl virus [VEM], complete genome. XX KW . XX OS Chenopodium leaf curl virus [VEM] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2628 RX DOI; 10.1371/journal.pone.0019050. RX PUBMED; 21544196. RA Ng T.F., Duffy S., Polston J.E., Bixby E., Vallad G.E., Breitbart M.; RT "Exploring the diversity of plant DNA viruses and their satellites using RT vector-enabled metagenomics on whiteflies"; RL PLoS One 6(4):E19050-E19050(2011). XX RN [2] RP 1-2628 RA Ng T.F.F., Bixby E., Vallad G., Duffy S., Polston J.E., Breitbart M.; RT ; RL Submitted (02-JUL-2010) to the INSDC. RL University of South Florida, 140 7th Ave S, Saint Petersburg, FL 33701, USA XX DR MD5; 9db45316e843687099e77ad6676fccbb. XX FH Key Location/Qualifiers FH FT source 1..2628 FT /organism="Chenopodium leaf curl virus [VEM]" FT /host="Bemisia tabaci" FT /mol_type="genomic DNA" FT /country="USA:Florida, Citra" FT /note="acronym: ChLCV[VEM]" FT /db_xref="taxon:1032479" FT stem_loop join(1..13,2609..2628) FT gene complement(196..639) FT /gene="AC5" FT CDS complement(196..639) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:F6KBA7" FT /db_xref="UniProtKB/TrEMBL:F6KBA7" FT /protein_id="AEF12626.1" FT /translation="MGVPYGLRSLTNQNITLFVWFFNLMFSSIHILPRMYTDLTQNRLP FT TRWVIPLPRVTSDMHITFPVCDTSCRCSNDWTLQGPSHPLGTSGVRIIRYILGFLYMGL FT FTHSVALLNVGPLPRRVEYLALRLTFEVPAINRHGASLLGILS" FT gene 206..961 FT /gene="CP/AV1" FT CDS 206..961 FT /codon_start=1 FT /gene="CP/AV1" FT /product="coat protein" FT /db_xref="GOA:F6KBA8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F6KBA8" FT /protein_id="AEF12625.1" FT /translation="MPKREAPWRLMAGTSKVSRNAKYSTRLGSGPTFNKATEWVNRPMY FT RKPRIYRMIRTPDVPRGCEGPCKVQSFEQRHDVSHTGKVICISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHRFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(958..1356) FT /gene="REn/AC3" FT CDS complement(958..1356) FT /codon_start=1 FT /gene="REn/AC3" FT /product="replication enhancer" FT /db_xref="GOA:F6KBA9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6KBA9" FT /protein_id="AEF12627.1" FT /translation="MDSRTGELITAAQAENGVFIWEIENPLYFRIDRVEEPLYTRTRIY FT HVQIRFNHNLRRALDLHKAFLTFQVWTTSLTASGTTYLNRFRQLVNMYLDQLGVISINN FT VIRAARFATDRSYVTNVLFRHSIKFKIY" FT gene complement(1103..1492) FT /gene="TrAP/AC2" FT CDS complement(1103..1492) FT /codon_start=1 FT /gene="TrAP/AC2" FT /product="transcription activator" FT /db_xref="GOA:F6KBB0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6KBB0" FT /protein_id="AEF12628.1" FT /translation="MRSSSPSHPPSIKIAHKIAKKRGIRRRRIDLDCGCSIYVHIGCSG FT HGFTHRGTHHCSSSGEWRFYMGDRKSPLFQDRQGGGTVVHQNEDIPRTNTVQPQPEESV FT GSPQSLLNLPSLDDFSDSFWDDVLK" FT gene complement(1404..2483) FT /gene="Rep/AC1" FT CDS complement(1404..2483) FT /codon_start=1 FT /gene="Rep/AC1" FT /product="replication initiator protein" FT /db_xref="GOA:F6KBB1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F6KBB1" FT /protein_id="AEF12629.1" FT /translation="MPRNPNSFRLQARNIFLTYPKCDIPKDEALLLLQSLPWSIVKPIY FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSAGFHPNVQAAKDTNAVKN FT YITKEGDYCESGQYTVSGGTKSNKDDVYHNAVNATTAREALDIIKAGDPKTFIVSYHNV FT KANIERLFHKPPERWVPPFPLSSFTHVPVDMQSWADDYFGNGVAARPERPISIIVEGDS FT RTGKTMWARALGPHNYLSGHLDFNARVYSNEVDYNVIDDVAPQYLKLKHWKELLGAQKD FT WQSNCKYGRPVQIKGGIPSIVLCNPGEGASYKEFLDKLENTSLKNWTIKNAIFITLTSP FT LYQDSAQDSQEEGDQEAQD" FT gene complement(2039..2404) FT /gene="AC4" FT CDS complement(2039..2404) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:F6KBB2" FT /protein_id="AEF12630.1" FT /translation="MKLFSCFNPCLGQSSNQYTSESQERNTQMGSLIYTVSSNSPVSPT FT SRMLDFSTSLTPEGLPDFTRTSKRLRTPTPSRITSPRKVIIVNPDNTQCLGVQSRIRTT FT CITTLLMQLLRERLSTL" XX SQ Sequence 2628 BP; 672 A; 581 C; 639 G; 736 T; 0 other; actggatggc cgcgcgattt ttggagtcct ttactctaga gaggcccatt acgctcccgg 60 cgcacacttt aatttaaagt aaaggttaag ttggaccaat cctattccgt ctgaggagcc 120 tagatatccg tgtctacttg gtcgctacgt tagtgggtgt ctgttataaa ttaaagtgtc 180 attggcccac gccctttaac ttaaaatgcc taagagggaa gccccatggc gattaatggc 240 gggaacctcg aaggttagcc gcaatgccaa atattctacc cgtctaggaa gtgggccaac 300 atttaacaag gccactgaat gggtgaacag gcccatgtac agaaagccca ggatataccg 360 gatgatccgt actcctgatg tgcccagagg gtgtgaaggg ccttgtaaag tccagtcatt 420 cgagcaacga catgatgtgt cacatactgg gaaagtgata tgcatatccg atgtgacacg 480 tggtaatggt atcacccacc gtgttggtaa gcgattctgt gttaagtcag tgtacattct 540 gggcaagata tggatggatg agaacatcaa gttgaagaac cacacgaaca gtgttatgtt 600 ctggttggtt agggatcgaa gaccgtatgg tactcccatg gatttcggtc aagtgttcaa 660 catgttcgac aatgagccta gcactgctac tgtgaagaac gatctacgtg atcgttatca 720 ggtcatgcac cggttctatg gcaaggtgac gggtggacag tatgccagca acgagcaggc 780 tatagtcaag cgcttctgga aggtcaacaa tcatgtggtg tacaatcacc aggaagctgg 840 gaagtacgag aaccacacgg agaacgcgct gttattgtat atggcatgta ctcatgcctc 900 taatcctgta tatgcaactt tgaagatccg aatctatttc tatgattcga ttatgaatta 960 ataaattttg aattttattg aatgtctaaa gagcacatta gttacataag atcggtctgt 1020 cgcaaaacga gcagccctaa ttacattgtt tatggaaatc acgcctaact gatctaagta 1080 catattaact aattgcctaa atctatttaa gtacgtcgtc ccagaagctg tcagagaagt 1140 cgtccagact tggaaggtta agaaggcttt gtggagatcc aacgctctcc tcaggttgtg 1200 gttgaaccgt atttgtacgt ggtatatcct cgttctggtg tacaacggtt cctccaccct 1260 gtctatcctg aaatagaggg gattttctat ctcccatata aaaacgccat tctccgcttg 1320 agctgcagtg atgagttccc ctgtgcgtga atccatgccc ggaacagcca atatgcacgt 1380 atatggagca cccgcaatct aaatcaatcc tgcgcctcct gatccccctc ttcttggcta 1440 tcttgtgcgc tatcttgata gaggggggat gtgagggtga tgaagatcgc atttttaatt 1500 gtccagttct tgagtgatgt gttttcaagt ttgtccagga actccttata actggcaccc 1560 tcaccaggat tgcaaagcac gatagacggt atcccgcctt taatttgaac tggcctgccg 1620 tacttgcagt ttgattgcca gtccttctgg gcccccagaa gttctttcca gtgctttaac 1680 tttagatatt gcggtgcgac gtcatcaatg acgttataat ccacttcgtt agaatagacc 1740 cgggcattga aatcaaggtg accactgaga taattatgtg gacccaaggc acgtgcccac 1800 atcgtctttc ccgtccttga gtcaccttcg acgattatac ttatcggtct ttctggccgc 1860 gcagcgacgc cgtttccgaa gtaatcatcc gcccaagatt gcatatctac tggaacgtga 1920 gtgaacgacg agagaggaaa cggaggaacc catcgttctg gaggtttgtg aaataggcgc 1980 tcaatgttag ccttgacgtt gtgataacta acgatgaacg tcttggggtc tcccgccttt 2040 ataatgtcga gagcctctct cgcagtagtt gcattaacag cgttgtgata cacgtcgtcc 2100 ttattcgact ttgtaccccc agacactgtg tattgtccgg attcacaata atcaccttcc 2160 ttggtgatgt aattcttgac ggcgttggtg tccttagccg cttggacgtt cgggtgaaat 2220 ccggcagacc ttctggggtg agtgaggtcg aaaaatctag catccttgat gttggactta 2280 ccggagagtt ggatgagaca gtgtaaatga gggaacccat ctgcgtgttc ctctcttgcg 2340 actctgatgt atattggttt gacgattgac caaggcaggg attgaagcaa gagaagagct 2400 tcatctttgg gtatgtcgca cttgggatat gttaagaata tatttctagc ttggagacga 2460 aaggaattag ggtttcgtgg cattttttta atttatgaag aggactccag accaggactc 2520 cgggtttcct ctcctcaaaa acctaatatt cttggagtcc tggagtccca tttatactaa 2580 aaccctctgg gggactccag gggcaaaagc ggccatccat ataatatt 2628 //