ID HM626515; SV 1; circular; genomic DNA; STD; VRL; 2626 BP. XX AC HM626515; XX DT 22-MAY-2011 (Rel. 108, Created) DT 22-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Chenopodium leaf curl virus, complete genome. XX KW . XX OS Chenopodium leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2626 RX DOI; 10.1371/journal.pone.0019050. RX PUBMED; 21544196. RA Ng T.F., Duffy S., Polston J.E., Bixby E., Vallad G.E., Breitbart M.; RT "Exploring the diversity of plant DNA viruses and their satellites using RT vector-enabled metagenomics on whiteflies"; RL PLoS One 6(4):E19050-E19050(2011). XX RN [2] RP 1-2626 RA Ng T.F.F., Bixby E., Vallad G., Duffy S., Polston J.E., Breitbart M.; RT ; RL Submitted (02-JUL-2010) to the INSDC. RL University of South Florida, 140 7th Ave S, Saint Petersburg, FL 33701, USA XX DR MD5; 887f09a311a0bee3ca9aadc062586d43. DR EuropePMC; PMC3081322; 21544196. XX FH Key Location/Qualifiers FH FT source 1..2626 FT /organism="Chenopodium leaf curl virus" FT /host="Chenopodium ambrosioides" FT /mol_type="genomic DNA" FT /country="USA:Florida, Citra" FT /note="acronym: ChLCV" FT /db_xref="taxon:1032478" FT stem_loop join(1..13,2607..2626) FT gene complement(194..637) FT /gene="AC5" FT CDS complement(194..637) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="GOA:F6KBA1" FT /db_xref="UniProtKB/TrEMBL:F6KBA1" FT /protein_id="AEF12619.1" FT /translation="MGVPYGLRSLTNQNITLFVWFFNLMFSSIHILPRMYTDLTQNRLP FT TRWVIPLPRVTSDMHITFPVCDTSCRCSNDWTLQGPSHPLGTSGVRIIRYILGFLYMGL FT FTHSVALLNVGPLPRRVEYFAFRLTFEVPASNRHGASLLGILS" FT gene 204..959 FT /gene="CP/AV1" FT CDS 204..959 FT /codon_start=1 FT /gene="CP/AV1" FT /product="coat protein" FT /db_xref="GOA:F6KBA2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:F6KBA2" FT /protein_id="AEF12620.1" FT /translation="MPKREAPWRLLAGTSKVSRNAKYSTRLGSGPTFNKATEWVNRPMY FT RKPRIYRMIRTPDVPRGCEGPCKVQSFEQRHDVSHTGKVICISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHRFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(956..1354) FT /gene="REn/AC3" FT CDS complement(956..1354) FT /codon_start=1 FT /gene="REn/AC3" FT /product="replication enhancer" FT /db_xref="GOA:F6KBA3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:F6KBA3" FT /protein_id="AEF12621.1" FT /translation="MDSRTGELITAAQAENGVFIWEIENPLYFRIDRVEEPAYTSSRVY FT HIQIRANHNLRRVLDLHKAFLTFQVWTTSLTASGTTYLNRFRQLVNMYLDQLGVISINN FT VIRAASFATDRSYVTNVLFRHSIKFKIY" FT gene complement(1101..1490) FT /gene="TrAP/AC2" FT CDS complement(1101..1490) FT /codon_start=1 FT /gene="TrAP/AC2" FT /product="transcription activator" FT /db_xref="GOA:F6KBA4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:F6KBA4" FT /protein_id="AEF12622.1" FT /translation="MRSSSPSHPPSIKIAHKIAKKRGIRRRRIDLDCGCSIYVHIGCSG FT HGFTHRGTHHCSSSGEWRFYMGDRKSPLFQDRQGGGTGVHVQQSVPHPDQGKPQPAESV FT GSPQGLLNLPSLDDFSDSFWDDVLK" FT gene complement(1402..2481) FT /gene="Rep/AC1" FT CDS complement(1402..2481) FT /codon_start=1 FT /gene="Rep/AC1" FT /product="replication initiator protein" FT /db_xref="GOA:F6KBA5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:F6KBA5" FT /protein_id="AEF12623.1" FT /translation="MPRNPNSFRIQARNIFLTYPQCDIPKDEALLLLQSLPWSVVKPTY FT IRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSAGFHPNVQGAKDTNAVKN FT YITKEGDYCESGQYKVSGGSKANKDDVYHNAVNATTAREALDIIKAGDPKTFIVSYHNV FT KANIERLFHKPPERWVPPFPLSSFTNVPVDMQAWADDYFGNGVAARPERPISIIVEGDS FT RTGKTMWARALGPHNYLSGHLDFNARVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQKD FT WQSNCKYGRPVQIKGGIPSIVLCNPGEGASYKEFLDKIENTSLKNWTIKNAVFITLTSP FT LYQDSAQDSQEEGDQEAQD" FT gene complement(2037..2402) FT /gene="AC4" FT CDS complement(2037..2402) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:F6KBA6" FT /protein_id="AEF12624.1" FT /translation="MKLFSCFNPCLGQSSNLHTSESQERNTQMGSLIYTVSSNSPVSPT FT SRMLDFSTSLTPEGLPDFTRTSKALKTPTPSRITSPRKVIIVNPDNTKCLGVQRRIKTT FT CITTLLMQLLRERLSTL" XX SQ Sequence 2626 BP; 674 A; 585 C; 639 G; 728 T; 0 other; actggatggc cgcgcgattt ttggagtcct ttactctgga gaggcccatt tcgctaccgg 60 cccacacttt aatttaaagt aaagtctatt tcgtccattc atagtgagtc tgacgagcgt 120 agatatccgg acctacttgg tcgctaagtt agtgggtgca gttataaatt aaagtgtcat 180 tggcccacgc tctttaactc aaaatgccta agagggaagc cccatggcga ttactggcgg 240 gaacctcgaa ggttagccga aatgcgaaat attctacccg tctaggaagt gggccaacat 300 ttaacaaggc cactgaatgg gtgaacaggc ccatgtacag gaagcccagg atataccgga 360 tgatccgtac tccagatgtg cccagagggt gtgaagggcc ttgtaaagtc cagtcattcg 420 aacagcgaca tgatgtgtca catactggga aagtgatatg catatccgac gtgacacggg 480 gtaatggtat aacccaccgt gttggtaagc gattctgtgt taagtccgtg tacattctgg 540 gcaagatatg gatggatgag aacatcaagt tgaagaacca cacgaacagt gttatgttct 600 ggttggttag ggatcgaaga ccgtatggta ctcccatgga tttcggtcag gtgttcaaca 660 tgttcgacaa tgagcctagc actgctactg tgaagaacga tctacgtgat cgttatcagg 720 tcatgcaccg gttctatggc aaggttacgg gtggacagta tgccagcaac gagcaggcta 780 tagtcaagcg cttctggaag gtcaacaatc atgtggtgta caatcaccag gaagctggga 840 agtacgagaa ccacacggag aacgcgctat tattgtatat ggcatgtact catgcctcta 900 atcctgtata tgcaactttg aagatccgaa tctatttcta tgattcgatt atgaattaat 960 aaattttgaa ttttattgaa tgtctaaaga gcacattagt tacataagac cggtctgtcg 1020 caaaactagc agccctaatt acattgttta tggaaataac gcctaactga tctaaataca 1080 tattaactaa ttgcctaaat ctatttaagt acgtcgtccc agaagctgtc agagaagtcg 1140 tccagacttg gaaggttaag aaggccttgt ggagatccaa cactctccgc aggttgtggt 1200 ttgccctgat ctggatgtgg tacactctgc tggacgtgta cgccggttcc tccaccctgt 1260 ctatcctgaa atagagggga ttttcgatct cccatataaa aacgccattc tccgcttgag 1320 ctgcagtgat gagttcccct gtgcgtgaat ccatgcccgg aacagccaat atgcacgtat 1380 atggagcacc cgcaatctaa atcaatcctg cgcctcctga tccccctctt cttggctatc 1440 ttgtgcgcta tcttgataga ggggggatgt gagggtgatg aagaccgcat tttttattgt 1500 ccagttcttt agtgatgtgt tttcaatttt gtccaagaac tccttataac tggcaccctc 1560 accaggattg caaagcacga tagacggtat cccgccttta atttgaactg gcctgccgta 1620 cttgcagttt gattgccagt ccttctgggc ccccagaagt tctttccagt gctttaattt 1680 tagatattgc ggtgcgacgt catcgatgac gttatactcc acttcgttag aataaacccg 1740 ggcattgaaa tcaaggtgac cactgagata attatgtgga cccaaggcac gagcccacat 1800 cgtctttccc gtccttgagt caccttcgac gattatactt atcggtcttt ctggccgcgc 1860 agcgacgccg tttccgaagt aatcatccgc ccaagcttgc atatctactg gaacgttagt 1920 gaacgacgag agaggaaacg gaggaaccca tcgttcagga ggtttgtgaa ataggcgctc 1980 aatgttagcc ttgacgttgt gatagctaac gataaacgtc tttgggtctc ccgcctttat 2040 aatgtcgaga gcctctctcg cagtagttgc attaacagcg ttgtgataca cgtcgtcttt 2100 attcgccttt gaacccccag acactttgta ttgtccggat tcacaataat caccttcctt 2160 ggtgatgtaa ttcttgacgg cgttggtgtc tttagcgcct tggacgttcg ggtgaaatcc 2220 ggcagacctt ctggggtgag tgaggtcgaa aaatctagca tccttgatgt tggacttacc 2280 ggagagttgg atgagacagt gtaaatgagg gaacccatct gcgtgttcct ctcttgcgac 2340 tctgatgtat gtaggtttga cgactgacca aggcagggat tgaagcaaga gaagagcttc 2400 atctttgggt atgtcgcact ggggatatgt taagaaaata tttctagctt ggatacgaaa 2460 ggaattaggg tttcgtggca tttttgtaat ttatgaagag gactccagac caggactccg 2520 ggtttcctct cctcaaaaac ttaatattcg tggagtcctg gagtcccatt tatactaaaa 2580 ccctctgggg gactccaggg gcaaaagcgg ccatccatat aatatt 2626 //