ID HM591197; SV 1; linear; genomic RNA; STD; VRL; 2176 BP. XX AC HM591197; XX DT 03-OCT-2010 (Rel. 106, Created) DT 15-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Strawberry latent ringspot virus isolate Pepino-NZ polyprotein gene, DE partial cds. XX KW . XX OS Strawberry latent ringspot virus OC Viruses; Riboviria; Picornavirales; Secoviridae. XX RN [1] RP 1-2176 RX DOI; .1094/PDIS-07-12-0703-RE. RX PUBMED; 30722200. RA Tang J., Ward L.I., Clover G.R.G.; RT "The Diversity of Strawberry latent ringspot virus in New Zealand"; RL Plant Dis. 97(5):662-667(2013). XX RN [2] RP 1-2176 RA Tang J., Clover G.R.G.; RT ; RL Submitted (28-JUN-2010) to the INSDC. RL Ministry of Agriculture and Forestry, Investigation and Diagnostic Centre, RL 231 Morrin Road, St Johns, Auckland 1140, New Zealand XX DR MD5; d0e889533748f1250c5011bb0b9636e4. XX FH Key Location/Qualifiers FH FT source 1..2176 FT /organism="Strawberry latent ringspot virus" FT /host="Solanum muricatum (pepino)" FT /isolate="Pepino-NZ" FT /mol_type="genomic RNA" FT /country="New Zealand" FT /collection_date="May-2005" FT /db_xref="taxon:28351" FT CDS <1..2139 FT /codon_start=1 FT /product="polyprotein" FT /note="contains large and small coat proteins" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E2IQI5" FT /protein_id="ADN88404.1" FT /translation="PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARAS FT FSFSGVSYGQQDRAALPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLHEDLVPAASGGTE FT AIFFSPKSIPVPGSAKFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTF FT MRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLT FT IDELATLSGYSIMNSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGIGPELP FT LTDSFLPLRQVVVDFDLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWK FT GTLVLEVIFNLPAMGGGTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLY FT GYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEY FT IQPTTSLGRLNPATTLVASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKS FT GFLFFPMTPSSHMPKLAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQG FT VLPMRPVCFGATVLDNILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRR FT WVNTHFGATESYGVRTCPAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILK FT PTPAPSIDYYYENTFPVG" XX SQ Sequence 2176 BP; 475 A; 498 C; 524 G; 679 T; 0 other; cctctccaac ctgctagact taccaggagt gcctcttata tgcctgttca gcgatcagga 60 gcgaaaacag ttcttacttt tgaggacaat caagcatccc tgaaggagca gcaacctttg 120 caggctcgtg cttctttttc gttttctggg gtttcctatg ggcagcagga tcgtgccgcc 180 cttccttcgg caccctcccc aaaatgtcct tttcataata gggtgggttg tccttgtaag 240 cagcataccg gtgaagcgga gccgagtggg ttgcatgaag acctcgtccc tgcggcatcc 300 ggtggtaccg aagccatttt cttttcaccc aagagcattc ctgttccagg tagtgctaag 360 tttgttggtt ctcacccctt ttcgtttcct ataaatagca atgttggtac caccgtctac 420 tctctacctt tgattagtac ctccttaaaa gatacagagt ggggaaggta ttataggagc 480 tataccttca tgcgctttaa accaactgtt agattggttt cttctgcacc tatacaggcc 540 aaggggctcc tgtggctatg ttatgatcct tgtgaaactc ttgcaaagta tcctagtagg 600 gagagagctt tgatgctgca gggtgtctgg tttatgccag gtagacatga ttctgtcacg 660 ctcacgattg atgaacttgc aacactttct ggctactcta taatgaatag tgatcataat 720 ggagctttca aggtggtcat tattaaggat cttgaaaatt ttgaggtggc tgaccttggg 780 atggaattat cccttttcct agatgtgcaa gatattggta tgggtattgg ccctgaacta 840 cctctcacgg atagtttttt acctcttcgt caggtggttg ttgatttcga tttgtcaacc 900 acaactccta agggcaaggc actggtgatt cctttaaatc ccttgcttcc tggttttgat 960 ggagcccagt ggtatcctag ttgctcttct tctatcctgg agaatcaccg ttactggaaa 1020 ggaactcttg tcctagaggt tatttttaac cttccggcca tgggtggtgg tactgtggaa 1080 atgggctttg caaataactc atactctggg tgggaaagcg atgcctatcg ttactttggt 1140 tcgacagttg tggatctgcg tgcgcatagg ttgttgcgtg ccaaggttcc cttgtatggt 1200 tatggtgggt atctaatggg gggtagtgga tctctgtttg ctgtaccgcc actcacagac 1260 tatgggcaat ctctgcgatt tgtcctactt ttcacagcac cacttcatat cagcgatact 1320 actaagaagg ggtctgttat gatccgttat cttggccttg aggactgtga gtatattcaa 1380 cccacaactt ctttggggag actgaatcca gcaacaaccc tagtagcatc tggagcgcct 1440 gtcgttcagg ttggaacatc tgactggacg gagccaccac ttttgcgcct tcctttgggg 1500 cttcttcaga agaagttccg tcttcttact atttccaagt ggcccaagag tggttttctc 1560 tttttcccaa tgacaccaag ttcccatatg ccaaaattgg cgggcacttt tgagggtgaa 1620 gttgagcaac atagcccttt gatgcatagg agccaggaga atgcccaatg gtgtggttct 1680 ctgacgtatt atctctctat tcgctattcg ggagctacac ctcagggagt tcttcccatg 1740 aggccagttt gttttggggc cacagttctg gataatatac tggataaacc ctgttttgtg 1800 gagaaggaca cgtttattca ggttatgcca atggccgacc ctcgagagac tatttatctc 1860 ccgaccactg agagtgtggc tttctatgag acaccaccaa ggcgttgggt taacacccat 1920 tttggggcca cagaatcata tggagttcga acctgtcctg catgggttct cctccaattt 1980 ccgaatgaag aggcttctca tttaggtgtt agggatgtct ctttgtgggt ggagccaaat 2040 atcagtttcc gacatgctgt cggtgggttc ccaatcttga aaccaactcc tgctccttct 2100 attgactact actacgagaa tacttttccc gtaggttaat ctctgttgga gtttttctta 2160 ggcatttctc aaggag 2176 //