ID HM590505; SV 1; circular; genomic DNA; STD; VRL; 2747 BP. XX AC HM590505; XX DT 02-JUL-2012 (Rel. 113, Created) DT 02-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Bhendi yellow vein mosaic Maharashtra virus [India:Varanasi:2008] segment DE DNA-A, complete sequence. XX KW . XX OS Bhendi yellow vein mosaic Maharashtra virus [India:Varanasi:2008] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2747 RA Singh A.K., Chakraborty S.; RT "Diversity of begomoviruses causing okra yellow vein mosaic disease of RT chillies in India"; RL Unpublished. XX RN [2] RP 1-2747 RA Singh A.K., Chakraborty S.; RT ; RL Submitted (26-JUN-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; ee88b71c3813d4391b861acc09659aae. XX FH Key Location/Qualifiers FH FT source 1..2747 FT /organism="Bhendi yellow vein mosaic Maharashtra virus FT [India:Varanasi:2008]" FT /segment="DNA-A" FT /host="okra" FT /isolate="Varanasi" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="A K Singh" FT /collection_date="May-2008" FT /db_xref="taxon:1046299" FT gene 121..486 FT /gene="AV2" FT CDS 121..486 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:I6M4C9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6M4C9" FT /protein_id="AEI73659.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQEYSPDTLGYDLIRDL FT ICIVRSRNYVEASCRYRHFYARVESTPASELRQPLHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:I6M4D0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6M4D0" FT /protein_id="AEI73660.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1054..1461) FT /gene="AC3" FT CDS complement(1054..1461) FT /codon_start=1 FT /gene="AC3" FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:I6M4D3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6M4D3" FT /protein_id="AEI73663.1" FT /translation="MDSRTGERITAAHSTKWRLYLGGSKSPFYFKILSHDNRPFTTNMD FT IITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLN FT LVIKAVEHVLYKVINQTMYVDQYSDIKLKLY" FT gene complement(1151..1606) FT /gene="AC2" FT CDS complement(1151..1606) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:I6M4D2" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6M4D2" FT /protein_id="AEI73662.1" FT /translation="MQHSSFSPNRSTPVPIKVQHREAKRAHRRKRVDLECGCSYYLSIN FT CHNHGFSHRGTHHCSSFNEMASLSGRFQIPLLFQNPQPRQPSIHDEHGHHNNEDPIQLQ FT PSESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLT" FT gene complement(1503..2594) FT /gene="AC1" FT CDS complement(1503..2594) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:I6M4D1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6M4D1" FT /protein_id="AEI73661.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPVNKKFIR FT ICRELHEDGNPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQTANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVFLTQPL FT YSGTNQSSTQGSEESAQEETSGP" FT gene complement(2144..2443) FT /gene="AC4" FT CDS complement(2144..2443) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6M4D4" FT /protein_id="AEI73664.1" FT /translation="MKMGILTCMFSSSSKESSSAGTIDSSTSPPQLGQHISIRTFRELK FT AQAMSKPTWRKTETSLIMEFSKSMEDQLEEVAKLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2747 BP; 723 A; 533 C; 654 G; 837 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcgactataa gtacgtgcgc actaagtttc aattcaaaaa 120 atgtgggatc cactattaaa cgagttcccg gatacggttc acggttttcg ttgtatgctt 180 tctgtgaaat atttgcaact tttgtcgcag gagtattcac cagatacgct tggttacgat 240 ttaatacggg atttaatttg tattgtccgt tctcgtaatt atgtcgaagc gagctgcaga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagccctta 360 caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccaagggg 480 atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgttg tccatattgg 540 taaggtaatg tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgtgatcgac gaccgacaga 720 taaaccacaa gattttggtg aagtatttaa tatgtttgat aacgagccca gtacggccac 780 cgttaagaac atgcataggg atcggtacca ggtgttgagg aaatggcatg caaccgttac 840 tggtggtcaa tatgcatcga aggaacaggc gttggttaag aagtttatca gggttaacaa 900 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacaccg agaatgcatt 960 gatgctttat atggcttgta cccatgctag taacccagtt tatgctacgc ttaagattcg 1020 gatatatttt tatgactctg taacgaattg aaattaataa agttttaatt ttatatctga 1080 atattggtct acatacattg tttgattaat tactttgtac aatacatgtt caacggcttt 1140 aataactaaa ttaagtgaga ttacacctag attgttgaga tacttgagta cttgggtttt 1200 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgcactccca gagctttccg aaggttgtag ttgaattgga tcctcattgt 1320 tatgatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ctgaggattt tgaaataaaa 1380 gggggatttg gaacctccca gataaagacg ccatttcgtt gaatgagctg cagtgatgcg 1440 ttcccctgtg cgagaatcca tggttgtggc agttgatact taggtaatag ctgcatccac 1500 actcaaggtc cactcgtttc ctcctgtgcg ctctcttcgc ttccctgtgt tgaactttga 1560 ttggtaccgg agtagagcgg ttgggtgaga aagacgaatg ttgcattctt taaagcccag 1620 gattttaatg ctgagttctt atcctcgtct aagaactctt tatagcttgc attgggccct 1680 ggattgcaga ggaagattgt tggtatgccg cctttaattt gaactggctt cccgtacttt 1740 gtgtttgatt gccagtccct ttgggccccc atgaattctt taaagtgttt taggaagtgt 1800 ggatcgacgt catcaatgac gttataccaa gcgtcgttac tgtacacctt tgggctaagg 1860 tccagatgcc cgcataaata gttatgtggg cctaaagacc tagcccacat tgtttttcca 1920 gtacgactat ctccctcaat tactatactt tgaggtctca ggggccgcgc agcggcatcg 1980 acaacgttct cgcacgccca ctcttcaagt tcttctggaa cttgatcaaa tgaagaagaa 2040 gaaaaaggag aaacataagg agctggaggc tcctgaaaat atctatctaa attagaattt 2100 aaattatgaa attgaagtag aaagtctctt ggggctttct ccttcagtat attgagggcc 2160 tgagctttgg accctgcgtt gattgcctcg gcatatgcgt cgttggcagt ttggcaacct 2220 cctctagctg atcttccatc gacttggaaa actccatgat caaggatgtc tccgtctttc 2280 tccatgtagg ttttgacatc gcttgagctt ttagctccct gaatgttcgg atggaaatgt 2340 gctgacctag ttggggaggt gaggtcgaag aatctattgt tcctgcactg gaactttcct 2400 tcgaactgga tgagaacatg caagtgagga ttcccatctt catgaagttc tctgcagatt 2460 ctaatgaatt ttttgtttac tggggtttgg agatttaaga attgggaaag tgcttcttct 2520 ttagtcaggg agcacttggg ataagtgaga aaataatttt tggcatttat tttaaaccga 2580 ttgggtgctg ccatgttgac ttagtcaatc ggtgtctctc aactctctct atgtatcggt 2640 gtattggagt cctatatata tggagactct aatggcataa atgtaaataa aagaacttta 2700 atgtgaaatt caaaggaaaa ggctaaagcg gccatccgtc taatatt 2747 //