ID HM590503; SV 1; circular; genomic DNA; STD; VRL; 2744 BP. XX AC HM590503; XX DT 02-JUL-2012 (Rel. 113, Created) DT 02-JUL-2012 (Rel. 113, Last updated, Version 1) XX DE Bhendi yellow vein mosaic Maharashtra virus [India:Dhanbad:2008] segment DE DNA-A, complete sequence. XX KW . XX OS Bhendi yellow vein mosaic Maharashtra virus [India:Dhanbad:2008] OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2744 RA Singh A.K., Chakraborty S.; RT "Diversity of begomoviruses causing yellow vein mosaic disease of okra in RT India"; RL Unpublished. XX RN [2] RP 1-2744 RA Singh A.K., Chakraborty S.; RT ; RL Submitted (26-JUN-2010) to the INSDC. RL Molecular Virology Laboratory, School of Life Sciences, Jawaharlal Nehru RL University, New Delhi, Delhi 110067, India XX DR MD5; 91ea881e88d5de5e5df80a9154296bcc. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Bhendi yellow vein mosaic Maharashtra virus FT [India:Dhanbad:2008]" FT /segment="DNA-A" FT /host="okra" FT /isolate="Dhanbad" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Punam Kumari" FT /collection_date="Apr-2008" FT /db_xref="taxon:1046298" FT gene 121..486 FT /gene="AV2" FT CDS 121..486 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /note="suppressor of RNAi" FT /db_xref="GOA:I6M4C2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I6M4C2" FT /protein_id="AEI73652.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQEYSPDTLGYDLIRDL FT ICIVRSRNYVEASCRYRHFYARVESTPASELRQPLHQPCCCPHCPRHKTTGMDKQAYEQ FT ETQNVPDVQKSGCSKGM" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="nucleoprotein; responsible for encapsidation of FT viral DNA and insect transmission" FT /db_xref="GOA:I6M4C3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6M4C3" FT /protein_id="AEI73653.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPTDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT CDS complement(1054..1458) FT /codon_start=1 FT /product="REn" FT /note="replicational enhancer protein; enhances viral FT replication" FT /db_xref="GOA:I6M4C6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6M4C6" FT /protein_id="AEI73656.1" FT /translation="MDSRTRERITAAHSTKWRLYLGVPNPLYFKILNHDNRPFTTNMDI FT ITMRIQFNYNLRKALGVHKCFLTFRIWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLNL FT VIKAVEHVLYNVINQTMYVDQYSDIKLKLY" FT gene complement(1151..1603) FT /gene="AC2" FT CDS complement(1151..1603) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP" FT /note="transcriptional activator protein; transactivates FT virion sense ORFs and suppressor of RNAi" FT /db_xref="GOA:I6M4C5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6M4C5" FT /protein_id="AEI73655.1" FT /translation="MQHSSFSPNRSTPVPVKVQHREAKRAHRRKRVDLECGCSYYLSIN FT CHNHGFSHKRTHHCSSFNEMASLSGSSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQP FT SESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSTQVSQQSRCNLT" FT gene complement(1500..2591) FT /gene="AC1" FT CDS complement(1500..2591) FT /codon_start=1 FT /gene="AC1" FT /product="Rep" FT /note="replicase; responsible for viral replication" FT /db_xref="GOA:I6M4C4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6M4C4" FT /protein_id="AEI73654.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPVNKKFIR FT ICRELHEDGNPHLHVLIQFEGKFQCRNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQTANDAYAEAINAGSKAQALNILKEKAPRDFLLQFH FT NLNSNLDRYFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNASYKEFLDEDKNSALKSWALKNATFVFLTQPL FT YSGTSQSSTQGSEESAQEETSGP" FT gene complement(2141..2440) FT /gene="AC4" FT CDS complement(2141..2440) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /note="involved in symptom expression and suppressor of FT RNAi" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I6M4C7" FT /protein_id="AEI73657.1" FT /translation="MKMGILTCMFSSSSKESSSAGTIDSSTSPPQLGQHISIRTFRELK FT AQAMSKPTWRKTETSLIMEFSKSMEDQLEEVAKLPTTHMPRQSTQGQKLRPSIY" XX SQ Sequence 2744 BP; 723 A; 529 C; 650 G; 842 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcgactataa gtacgtgcgc actaagtttc aattcaaaaa 120 atgtgggatc cactattaaa cgagttcccg gatacggttc acggttttcg ttgtatgctt 180 tctgtgaaat atttgcaact tttgtcgcag gagtattcac cagatacgct tggttacgat 240 ttaatacggg atttaatttg tattgtccgt tctcgtaatt atgtcgaagc gagctgcaga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagccctta 360 caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccca gaatgtaccg gatgtacaga agtccggatg ttccaagggg 480 atgtgagggt ccctgtaagg tacagtcgtt tgaatctcga cacgatgttg tccatattgg 540 taaggtaatg tgtatttctg atgttacgcg tggagtcggt ttgacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgtgatcgac gaccgacaga 720 taaaccacaa gattttggtg aagtatttaa tatgtttgat aacgagccca gtacggcgac 780 cgttaagaac atgcataggg atcggtacca ggtgttgagg aaatggcatg caaccgttac 840 tggtggtcaa tatgcatcga aggaacaggc gttggttaag aagtttatca gggttaacaa 900 ttatgttgtt tacaaccagc aggaggcagg aaaatacgag aatcacaccg agaatgcatt 960 gatgctttat atggcttgta cccatgctag taacccagtt tatgctacgc ttaagattcg 1020 gatatatttt tatgactctg taacgaattg aaattaataa agttttaatt ttatatctga 1080 atattggtct acatacattg tttgattaat tacattgtac aatacatgtt caactgcttt 1140 aataactaaa ttaagtgaga ttacacctag attgttgaga tacttgagta cttgggtttt 1200 gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgcactccca gagctttccg aaggttgtag ttgaattgga tcctcattgt 1320 tatgatgtcc atgttcgtcg tgaatggacg gttgtcgtgg ttgaggattt tgaaataaag 1380 gggatttgga actcccagat aaagacgcca tttcgttgaa tgagctgcag tgatgcgttc 1440 tcttgtgcga gaatccatgg ttgtggcagt tgatacttag gtaatagctg catccacact 1500 caaggtccac tcgtttcctc ctgtgcgctc tcttcgcttc cctgtgttga actttgactg 1560 gtaccggagt agagcggttg ggtgagaaag acgaatgttg cattctttaa agcccaggat 1620 tttaatgctg agttcttatc ctcgtctaag aactctttat agcttgcatt gggccctgga 1680 ttgcagagga agattgttgg tattccgcct ttaatttgaa ctggcttccc gtactttgtg 1740 tttgattgcc agtccctttg ggcccccatg aattctttaa agtgttttag gaagtgtgga 1800 tcgacgtcat caatgacgtt ataccaagcg tcgttactgt acacctttgg gctaaggtcc 1860 agatgcccgc ataaatagtt atgtgggcct aaagacctag cccacattgt ttttccagta 1920 cgactatctc cctcaattac tatactttga ggtctcaggg gccgcgcagc ggcatcgaca 1980 acgttctcgc acgcccactc ttcaagttct tctggaactt gatcaaatga agaagaagaa 2040 aaaggagaaa cataaggagc tggaggctcc tgaaaatatc tatctaaatt agaatttaaa 2100 ttatgaaatt gaagtagaaa gtctcttggg gctttctcct tcagtatatt gagggcctga 2160 gcttttgacc ctgcgttgat tgcctcggca tatgcgtcgt tggcagtttg gcaacctcct 2220 ctagctgatc ttccatcgac ttggaaaact ccatgatcaa ggatgtctcc gtctttctcc 2280 atgtaggttt tgacatcgct tgagctttta gctccctgaa tgttcggatg gaaatgtgct 2340 gacctagttg gggaggtgag gtcgaagaat ctattgttcc tgcactggaa ctttccttcg 2400 aactggatga gaacatgcaa gtgaggattc ccatcttcat gaagttctct gcagattcta 2460 atgaattttt tgtttactgg ggtttggaga tttaagaatt gggaaagtgc ttcttcttta 2520 gtcagggagc acttgggata agtgagaaaa taatttttgg catttatttt aaaccgattg 2580 ggtgctgcca tgttgactta gtcaatcggt gtctctcaac tctctctatg tatcggtgta 2640 ttggagtcct atatatatgg agactctaat ggcataaatg taaataaaag aactttaatt 2700 tgaaattcaa aggaaaaggc taaagcggcc atccgtctaa tatt 2744 //