Dbfetch
ID HM585443; SV 1; circular; genomic DNA; STD; VRL; 2679 BP. XX AC HM585443; XX DT 16-JAN-2011 (Rel. 107, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Sida mosaic Bolivia virus 2 segment DNA-A, complete sequence. XX KW . XX OS Sida mosaic Bolivia virus 2 OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2679 RX DOI; 10.1007/s00705-010-0876-9. RX PUBMED; 21170729. RA Wyant P.S., Gotthardt D., Schafer B., Krenz B., Jeske H.; RT "The genomes of four novel begomoviruses and a new Sida micrantha mosaic RT virus strain from Bolivian weeds"; RL Arch. Virol. 156(2):347-352(2011). XX RN [2] RP 1-2679 RA Wyant P.S.; RT ; RL Submitted (24-JUN-2010) to the INSDC. RL Molecular Biology and Plant Virology, University of Stuttgart, RL Pfaffenwaldring 57, Stuttgart, Baden-Wurttenberg 70550, Germany XX DR MD5; 1d97f6e014869d892c616e349ad5deab. DR EuropePMC; PMC4189032; 25243369. XX FH Key Location/Qualifiers FH FT source 1..2679 FT /organism="Sida mosaic Bolivia virus 2" FT /segment="DNA-A" FT /host="Sida micrantha" FT /strain="SiMBoV2" FT /mol_type="genomic DNA" FT /country="Bolivia" FT /lat_lon="17.85 S 63.24 W" FT /collection_date="Nov-2007" FT /db_xref="taxon:932070" FT gene 264..1019 FT /gene="AV1" FT CDS 264..1019 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7CT28" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7CT28" FT /protein_id="ADV15514.1" FT /translation="MPKRDPSWRQMAGTSKVSRSSNFSPRGRVDPKYNKATEWVHRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHRFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(1016..1414) FT /gene="AC3" FT CDS complement(1016..1414) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:E7CT29" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7CT29" FT /protein_id="ADV15517.1" FT /translation="MDSRTGELITVPQAENGVYIWEITNPLYFKIYHVEDLVYTRTRVY FT HVQIRFNHNLRRALHLHKAYFNFQVWTISVRASGKTYLNRFKYLVLMYLDELGVISINN FT VIRAVRHATNKSYVNHVLENHSIKFKIY" FT gene complement(1161..1550) FT /gene="AC2" FT CDS complement(1161..1550) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional regulator" FT /db_xref="GOA:E7CT30" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7CT30" FT /protein_id="ADV15516.1" FT /translation="MRNSSSSTPPSIKPQHRAAKRRATRRKRIDISCGCSIYVHIGCSN FT HGFTHRGTHHCASGREWRLYLGNNKSPVFQDIPCRGPGIYEDQSIPRADTVQPQPEESI FT ASPQSLFQFPSLDDISSSFWEDLFK" FT gene complement(1471..2547) FT /gene="AC1" FT CDS complement(1471..2547) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:E7CT31" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7CT31" FT /protein_id="ADV15515.1" FT /translation="MPSSKRFVINAKNYFLTYPKCSLTKEEALSQLQCIQTPTNKKFIK FT IARELHENGEPHLHVLLQFEGKFKCQNQRFFDLVSPTRSTHFHPNIQGAKSSSDVKSYV FT DKDGDTLEWGIFQIDGRSARGGCQSANDTYAKVLNAETASDALQILKEEQPRDYVLYLD FT KIKSHVQKLFASAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRSAAARPERPMSIIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNPRVYSNNVLYNVIDDVTPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKQENASLRNWTLHNAKFVFLN FT SPLYQTTTQGGETQGNSP" FT gene complement(2133..2396) FT /gene="AC4" FT CDS complement(2133..2396) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7CT32" FT /protein_id="ADV15518.1" FT /translation="MKMGNLTSMCFSSSRVNSSARIRDSSIWSPQPGQHISIRTFRELN FT RAQMSSRTSTRTETPLNGEFSRSTAEVLEEVASRLTTHTPRF" XX SQ Sequence 2679 BP; 657 A; 594 C; 647 G; 781 T; 0 other; accggatggc cgcgcgattt tttgcccccc ctacgtggcg ctctggtggc cgcgcgatct 60 cccctggtgc cccctcgcgc tccctctccc ctttccgcga tagcactctc tctggtgtgg 120 acccagacaa gaaaggacaa aatgggccgc ccaatcagat tttgtcctta aagcctattt 180 aatttgaaat acttgggctc caagttgtta aaggtgtata aatttgaaca tgatttcgtg 240 ggttcaacag gctttaattt gaaatgccta agcgggatcc ctcatggcgc cagatggcgg 300 gaacctcaaa ggttagccgc tcttctaatt tctctcctcg tggacgagtc gacccaaaat 360 ataataaggc cactgaatgg gttcacaggc ccatgtacag gaagcccagg atatacagga 420 cgctacggac gcctgatgtt cctagaggct gtgagggtcc ctgtaaggtc caatcctacg 480 agcagcgtca tgacatctca cacgtgggta aggtcatgtg catatctgat gtcacacgtg 540 ggaatggtat aacccaccgt gtcggtaagc gtttttgtgt taagtctgtg tatatactag 600 gtaagatatg gatggacgag aatatcaagt tgaagaacca cacgaacagt gtgatgttct 660 ggttggtcag ggaccgtaga ccgtatggta ctccaatgga ttttggccag gtgttcaaca 720 tgtttgacaa cgagcccagt accgctactg tgaagaacga tcttcgcgat cgttatcaag 780 tgatgcacag gttttatgcc aaggttaccg gcggtcaata tgccagcaac gagcaggctc 840 tcgtcaagcg tttctggaag gtcaacaact atgtggtgta caaccatcag gaagccggga 900 agtatgagaa tcacacggag aatgccctgt tattgtatat ggcatgtact catgcctcta 960 accccgtgta tgcgacgctt aagattcgaa tctattttta tgattcgatt atgaattaat 1020 aaattttgaa ttttattgaa tgattctcca atacatgatt tacatatgat ttgttcgtgg 1080 cgtgacgaac agctctaatt acattattaa ttgagataac acctagttca tctagataca 1140 ttagaactaa atatttaaac ctatttaaat aagtcttccc agaagctcga actgatatcg 1200 tccagacttg gaaattgaaa taggctttgt ggagatgcaa tgctctcctc aggttgtggt 1260 tgaaccgtat ctgcacgtgg tatactctgg tcctcgtata taccaggtcc tctacatggt 1320 atatcttgaa atacagggga tttgttattt cccagatata gacgccattc tctgcctgag 1380 gcacagtgat gagttcccct gtgcgtgaat ccatggttac tgcagccgat gtggacgtag 1440 atggagcacc cgcagctaat gtcgatcctc ttacggcgag ttgccctgcg tttcgccgcc 1500 ctgtgttgtg gtttgataga ggggggagtt gaggaagacg aatttcgcat tatggagagt 1560 ccagtttctc agagatgcat tttcctgctt gtctaggaaa tctttatagc tggctccctc 1620 acctggattg cagagcacga ttgatgggat tcctccttta atttgaactg gcttcccgta 1680 cttgcaattt gactgccagt ctttttgtgc accaatcagc tccttccagt gctttagctt 1740 tagataatgc ggtgtgacat catcgatgac gttgtacagg acattattgg agtagaccct 1800 tggattgaag tccagatgtc cactaagata attatgtggg cctaacgcac gagcccacat 1860 tgtcttccct gtccttgaat caccttcgac gatgatactc ataggtctct ctggccgcgc 1920 agcggcactc ctcccaaaat agtcatcggc ccactcttgc atttcgtcgg gaacgttagt 1980 gaaagaggaa agtggaaacg gagggaccca aggttccgga gcactggcaa ataacttttg 2040 aacatgagac ttgattttat ccagataaag aacatagtcc cttggttgtt cttctttcaa 2100 aatctgcagt gcgtctgatg ccgtttctgc gtttagaacc ttggcgtatg tgtcgttagc 2160 cgactggcaa cctcctctag cacttctgcc gtcgatctgg aaaattcccc attcaagggt 2220 gtctccgtcc ttgtcgacgt acgacttgac atctgagctc gatttagctc cctgaatgtt 2280 cggatggaaa tgtgttgacc tggttgggga gaccagatcg aagaatctct gattctggca 2340 cttgaattta ccctcgaact ggagaagcac atggaggtga ggttccccat tttcatggag 2400 ctctctggcg attttgatga acttcttgtt tgttggggtt tgaatgcatt gtaattggga 2460 aagtgcttct tctttggtta aagagcactt tggatatgtg aggaaataat ttttggcatt 2520 tattacaaac cgcttgctcg atggcatttt tgtaataaag ggtgagtacc aattgggtct 2580 cactcaaact tggtgaaatg aattggggaa tgggtctcaa tatatactaa gagtccgtta 2640 gcttagatct gccacgtggc ggccatccgc tataatatt 2679 //