ID HM585439; SV 1; circular; genomic DNA; STD; VRL; 2676 BP. XX AC HM585439; XX DT 16-JAN-2011 (Rel. 107, Created) DT 04-MAR-2011 (Rel. 108, Last updated, Version 2) XX DE Sida micrantha mosaic virus - Rhombifolia [Bolivia:Cerro Fraile 2:2007] DE segment DNA-A, complete sequence. XX KW . XX OS Sida micrantha mosaic virus - Rhombifolia [Bolivia:Cerro Fraile 2:2007] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2676 RX DOI; 10.1007/s00705-010-0876-9. RX PUBMED; 21170729. RA Wyant P.S., Gotthardt D., Schafer B., Krenz B., Jeske H.; RT "The genomes of four novel begomoviruses and a new Sida micrantha mosaic RT virus strain from Bolivian weeds"; RL Arch. Virol. 156(2):347-352(2011). XX RN [2] RP 1-2676 RA Wyant P.S.; RT ; RL Submitted (24-JUN-2010) to the INSDC. RL Molecular Biology and Plant Virology, University of Stuttgart, RL Pfaffenwaldring 57, Stuttgart, Baden-Wurttenberg 70550, Germany XX DR MD5; a8ecb02f1e8cd5d22201f43c05800ad1. XX FH Key Location/Qualifiers FH FT source 1..2676 FT /organism="Sida micrantha mosaic virus - Rhombifolia FT [Bolivia:Cerro Fraile 2:2007]" FT /segment="DNA-A" FT /host="Sida rhombifolia" FT /strain="SimMV-rho[Bo:CF2:07]" FT /mol_type="genomic DNA" FT /country="Bolivia" FT /lat_lon="18.28 S 63.68 W" FT /collection_date="Nov-2007" FT /db_xref="taxon:932068" FT gene 242..1024 FT /gene="AV1" FT CDS 242..1024 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E7CT14" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E7CT14" FT /protein_id="ADV15504.1" FT /translation="MYDVRHYFEMPKRDPSWRQMAGTSKVSRSSNFSPRGGGGPKFNKA FT SEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNG FT ITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMF FT DNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGK FT YENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(1021..1419) FT /gene="AC3" FT CDS complement(1021..1419) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:E7CT15" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E7CT15" FT /protein_id="ADV15507.1" FT /translation="MDSRTGEFITAPQAENGVYIWETTNPLYFKIYRVEDPPFTRTRVY FT HIQIRFNHNLRKALGLHKAYLNFQVWTTSLTASGKTYLIRFRRLVIKYLDQLGVISLNN FT VIRAVRFATDKAYVNYVLENHNIKFKFY" FT gene complement(1166..1555) FT /gene="AC2" FT CDS complement(1166..1555) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional regulator" FT /db_xref="GOA:E7CT16" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E7CT16" FT /protein_id="ADV15506.1" FT /translation="MLNSSSSTPPSIKQRHRIAKKRALRRRRVDLECGCSIFVHLNCSG FT HGFTHRGIHHCTSGREWRLYLGDNKSPVFQDLPRRGSSVHEDQSVPHTNKVQPQPQESI FT GSPQGLPELPSLDDLSDSFWEDLFN" FT gene complement(1476..2552) FT /gene="AC1" FT CDS complement(1476..2552) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:E7CT17" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E7CT17" FT /protein_id="ADV15505.1" FT /translation="MPAPKRFKISAKNYFLTYPQCSLTKEETLSQLQSLQIPVNKKFIK FT ICRELHENGEPHLHVLIQFQGKFQCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKEVALQIIREKLPEKFLFQFH FT NLNSNLDRIFARAPEPWAPPFRLSSFTNVPDEMQEWADDYFGRGSAARPLRPISLIVEG FT GSRTGKTMWARALGPHNYFSGHLDFNSKVYSDQVEFNVIDDVAPHYLKLKHWKELIGAQ FT QKWQTNCKYGKPRLIEGGVPSIVLCNPGEGASYKDFLDKEENSSLRAWTLHNAKFIFLD FT APLYQTETQDCQEESTQA" FT gene complement(2138..2401) FT /gene="AC4" FT CDS complement(2138..2401) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E7CT18" FT /protein_id="ADV15508.1" FT /translation="MKMGSLISTSSSSSKGNSNAQITDSSTWYPQPGQHISILTFRELN FT HRPTSSPTSIRTEIPSNGENSRSTAEVLEAVAKQLTTLPQKP" XX SQ Sequence 2676 BP; 667 A; 598 C; 649 G; 762 T; 0 other; accggatggc ccgcgcgatt tttccccccc cctacgtggc gcgctggtgg tcgtgcgatt 60 tcccctctcc ctctcgcgcg acgtggagct cagatgtccg cgcgtttcct ccgcgcgctt 120 tggctttaat ttaaattaaa ggaaataact ttcatccgga ccaatgaaat tgcgtcttta 180 tagcctagat atttgcgtaa tacttgggcc cgaagttgtt agacggctat aaaattaagt 240 catgtatgac gtcagacatt atttcgaaat gcccaagcgg gatccctcat ggcgccagat 300 ggcgggaacc tcaaaggtta gccgctcgtc taatttttcc ccacgtggag gtggaggccc 360 aaaattcaac aaggcctcgg aatgggtcaa caggcccatg tataggaagc ccaggattta 420 caggacgcta agaactcctg acgttcctag aggctgtgaa ggaccctgta aggtccagtc 480 ctacgagcag cgccatgaca tatcacatgt cgggaaggtc atgtgcatat ctgatgtcac 540 acgtggcaac gggataactc atcgtgtcgg taagcgtttc tgcgttaagt ctgtgtacat 600 attagggaag atatggatgg acgagaacat caagctcaag aaccacacga acagtgttat 660 gttctggttg gtcagagacc gtagaccgta tggtactcct atggactttg gtcaagtgtt 720 caacatgttt gacaacgagc ccagcactgc tacggtgaag aacgatctcc gtgatcgtta 780 tcaagttatg cacaagttct acgccaaggt cactggtggt caatatgcca gcaacgagca 840 ggctctggtt aagaggttct ggaaggtcaa caatcatgtg gtgtataacc accaagaagc 900 tggcaagtac gagaatcaca cggagaatgc tttgttactg tatatggcat gtactcatgc 960 ctctaaccct gtgtatgcaa cgcttaagat tcgaatctat ttctacgatt cgataacaaa 1020 ttaataaaat ttgaatttta tattatgatt ttcaagtaca tagtttacat aggctttgtc 1080 agttgcaaag cgaacagctc taattacatt gttaagcgaa attacaccta attgatctaa 1140 gtacttaatt acaaggcgcc taaacctaat taaataagtc ttcccagaag ctgtcagaga 1200 ggtcgtccag acttggaagt tcaggtaggc cttgtggaga cccaatgctt tcctgaggtt 1260 gtggttgaac cttatttgta tgtggtacac tctggtcctc gtgaacggag gatcctctac 1320 gcggtagatc ttgaaataca ggggatttgt tgtctcccag atatagacgc cattctctgc 1380 ctgaggtgca gtgatgaatt ccccggtgcg tgaatccatg gccgctgcag ttcaagtgca 1440 cgaagattga acagccacac tctaggtcca ctcgtctacg cctgagtgct ctcttcttgg 1500 caatcctgtg tctctgtttg atagaggggg gcgtcgagga agatgaattt agcattgtgg 1560 agtgtccaag ctcgcagtga tgaattttcc tctttgtcta ggaagtcttt atagctggcc 1620 ccctctccag gattgcatag cacgattgaa gggaccccac cttcaatcaa acgaggcttt 1680 ccgtatttgc agtttgtctg ccatttttgt tgggccccta ttagctcttt ccagtgtttc 1740 aactttaggt aatgcggagc gacgtcatcg atgacgttaa actccacttg atcagaatat 1800 acctttgagt tgaaatccag atggccactg aagtaattat gtgggcctaa tgctctagcc 1860 cacatcgtct tacccgttct gctaccacct tcaacaatta aacttatggg cctcaaaggc 1920 cgcgcagcgg aacccctacc aaaataatca tcggcccact cttgcatctc gtctggcacg 1980 ttagtgaatg aggatagtcg aaaggggggg gcccatggtt ccggagccct tgcgaagatc 2040 ctatctaaat tactatttag attatgaaat tgaaatagga acttttccgg cagcttctcc 2100 ctgattatct gcaaggctac ttcttttgaa ggtgcgttca aggcttctgc ggcagcgtcg 2160 ttagctgttt ggcaaccgcc tctagcactt ctgccgtcga tctggaattc tccccattcg 2220 atggtatctc cgtccttatc gatgtaggac ttgacgtcgg acgatgattt agctccctga 2280 atgttaggat ggaaatgtgc tgacctggtt ggggatacca ggtcgaagag tctgttattt 2340 gtgcattgga atttcccttg gaactggatg aggacgtgga gatgaggctc cccattttca 2400 tggagctctc tgcaaatttt gatgaacttc ttgttaactg gtatttgtaa gctctgtaat 2460 tgggaaagtg tctcctcttt ggttaaggag cactggggat atgttaagaa ataatttttg 2520 gcacttattt taaaacgttt gggcgctggc atttttgtaa ataaggggtg taccccaatt 2580 gagctctcgc tctataagtc atatgaattg gggtaatggg gacaatatat agtagaagat 2640 cctaaggggc tttaagcggc catccgcaat aatatt 2676 //