ID HM585279; SV 1; linear; genomic RNA; STD; VRL; 4499 BP. XX AC HM585279; XX DT 07-MAY-2013 (Rel. 116, Created) DT 07-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate Hubei segment S1, complete DE sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-4499 RA Zhang S., Wu Z., Wei T., Xie L.; RT "The complete genome sequence of Hubei isolate of Southern rice RT black-streaked dwarf virus, a new member of the genus Fijivirus"; RL Unpublished. XX RN [2] RP 1-4499 RA Zhang S., Wu Z., Wei T., Zhuang J., Xiao D., Lin Q., Xie L.; RT ; RL Submitted (23-JUN-2010) to the INSDC. RL Fujian Agriculture and Forestry University, Key Laboratory of Biopesticide RL and Chemical Biology, Ministry of Education, Kingshan, Fuzhou, Fujian RL 350000, P.R. China XX DR MD5; 57e3fe007883519e2818173df5d9dd60. XX CC GenBank Accession Numbers HM585270-HM585279 represent sequences CC from the 10 segments of Southern rice black-streaked dwarf virus. XX FH Key Location/Qualifiers FH FT source 1..4499 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S1" FT /host="rice" FT /isolate="Hubei" FT /mol_type="genomic RNA" FT /country="China" FT /db_xref="taxon:519497" FT CDS 36..4430 FT /codon_start=1 FT /product="RNA polymerase" FT /note="P1" FT /db_xref="UniProtKB/TrEMBL:R4HGC0" FT /protein_id="AEI59023.1" FT /translation="MVERKFSRSAEICLKKFNSIQKFRQNKQQQKTNRDRTISQKEKKV FT NDRAPPPSKKEDIPTISTPISIESQSNLDEQRTSYIHLLHQKDSILDAIIEDAENIRNV FT FIGEVPLTKEIIKNRLDDISTVLNNASDLILKLFESDNGILNECVIPNDVIQKDIYSIL FT HPSEIFDYNGFGIDEVNNLAISPKIRYLPNWNIQKIRSTIDLLKNDNSPLKPVKLAHDY FT GLISNNLKRKLLIGVDRMFNKLSIQHRFGTFESQIFSCFLMKQLLTEEQCYVNLPNCVL FT KSKFQKRGIDTVCWQYLRQIILHYNGFPFYHHTHSARFGVLDSTKISIHTDLPVSCVLP FT SVLHGLLNGIVSELLCDLNSETALIYAKHLMFCSQQSTYQRQLDFKDSFRSWPKLCYDS FT IGYVLAVLYSSDMKPLEQRIEHIDSEFWMDEKEKEILETSVSQLPDYVKKFVSSSIAHC FT TDLGNIVKSRMALNNNISLSRELTNEEVTSVRLLASKNTEFLRWLTMTSTIISNFGIYN FT KTSLLLEYEKSVGTKQDVMVSKPECKISIVTEQGMNIPLINDWSKVPILNEMSELFDQN FT WKSDLIKEFEHIDDFEKRFVTFLTNKSGGQKSEEPTLSKELKGISNARVIAFALNRNDY FT HDELKFIKMLMAYGKCAIRFQIDRRARVIVIVPNAIQSSELFLLLGFNVLKTNKKHNDK FT IAVGKQIGNLLDARVQMCNTGDVSSVKNSGDMKGMDAHTIPNLTLFLRNKMIEVLFELD FT PSKSCSNFFFSEDKEYTLKEKHPKFEEIYNRKLRGVVIHAAKCLFYMFSMNMYLEDHFF FT ADSQTVSDQTFQTGFFATSAQHTLFLSLFLLNLERKFFAKLDNKMISVMHSVMGDDVLE FT VIKNGVKFPDKVRSWLSLRKNDLAKLNYEEELSLSRMYGVFLQQAALLGVYVPYPSRMS FT LFCDERSDTTKRHTLDMIKIVMDVISAKAQRSYGIDNGLGIGYSIWSCHRSSRYIYSDF FT DKSKVSQLLEMDKTFDFNFIVSHDETEKSIRFIYPFVTVMCSPISWPMLTFVMNDISDP FT NKFITYKSKAFTSLNGDGAYMLINQMFFTSNEQHMFQFVDYVKHQSKIVELKLNSNFLN FT WEARHHWGFTFGEHLLRFKRLRHLTESRKNELGLGDIEVMVHNLNKYLDGNRVLLSFNS FT ISVLKAHKIEVPYGLMYANHNRSKIDQSLTVRTESLEERVYLDSIFLKHMLDYKTVPKD FT LEVLKTHALCSVRLRIYGDFDYACEKDGVIEPSSDAQFNIILPFLPGYHLNSAYGKLFL FT YSTLPTVHDRDISGTLGEITGSLGASFDVDAAIEFGAHVFNINPSLVDAAGTAIGIPQG FT LLNHYKNLVNAFVTNNFNLKYHSIFLNVKYFGLNGSLKHFSTFGDYSSRLVRFDLIHKL FT DRYHNVFVRDFIFAYIHELNGRRVYLDYSLHSLLLVMSRGSIKCFTSHLSQLFNPMLTL FT EFD" XX SQ Sequence 4499 BP; 1468 A; 669 C; 791 G; 1571 T; 0 other; aagttttttt gccgacctac gtatctcata gacaaatggt ggaacgaaag ttcagtagat 60 ctgcagaaat ttgcttaaaa aaattcaact caatccaaaa atttagacaa aacaagcaac 120 agcaaaaaac caacagagac cgaacaattt ctcaaaaaga aaagaaagta aacgacagag 180 cccctccccc ttcaaagaaa gaagacattc ccacaatttc tacccctatt tcaattgaat 240 ctcaatcaaa tttggatgaa caaagaacat cttacattca tcttttacat caaaaagatt 300 ccattttaga cgcaatcatt gaagatgctg aaaacattcg aaacgttttt attggtgaag 360 tgcctttaac caaagaaatc attaaaaatc gactagatga catttcgaca gtgttaaata 420 atgctagtga tttaattctc aaattatttg aatctgataa tggtattttg aatgaatgtg 480 ttatcccgaa tgacgttata caaaaagata tttattccat tttgcatccc tctgaaattt 540 ttgattataa tggttttggc attgatgaag ttaataactt agcgattagt ccaaagatta 600 gatatttacc taattggaac attcagaaaa ttagaagtac tattgatctt ttgaaaaacg 660 ataattctcc tttgaaacca gtcaaattgg ctcatgatta tggtttgatt agtaataact 720 taaaacgtaa attattaatt ggtgttgata gaatgtttaa taaattaagt attcaacata 780 gatttggtac ttttgaaagt caaatattca gttgttttct tatgaaacaa ttgctaacag 840 aagaacagtg ttacgtcaat cttccaaatt gcgttttaaa atcaaaattt caaaaaagag 900 gaattgacac tgtatgctgg caatatttgc gacaaatcat ccttcattac aatggttttc 960 ctttttatca tcacactcat agtgcaagat ttggtgtgct tgacagtaca aaaatttcta 1020 ttcataccga tttaccagtt tcttgtgtac ttccaagtgt tttacatgga ttgttaaacg 1080 gcatagtttc agaattatta tgtgatttga actcagagac ggctttaatt tatgccaaac 1140 atttgatgtt ttgctctcaa caatcaactt atcaacgtca actcgatttt aaagatagtt 1200 ttcgttcttg gcctaaattg tgttatgata gtattggtta tgtgttagct gtattatact 1260 cttcagacat gaaacctttg gaacaaagaa ttgaacatat tgattcagaa ttttggatgg 1320 atgaaaaaga gaaagaaatt ttagaaacga gtgtttctca attaccggat tacgttaaaa 1380 aattcgtttc ttcttctatt gcgcattgta ctgaccttgg taacattgtt aaatcaagaa 1440 tggctttaaa taacaacatt tctttatcca gagagctaac taatgaggaa gtaacttctg 1500 tacgtctttt agcaagtaaa aatactgaat ttttaaggtg gttgaccatg accagcacta 1560 ttatttctaa ttttgggata tataacaaaa cttctctatt gctcgaatac gaaaaatcag 1620 ttggaacaaa acaagacgtt atggtgtcga aacctgagtg caaaatcagc attgttacag 1680 aacaaggtat gaatattcca ttaattaatg attggtctaa agttcctata ctaaatgaga 1740 tgtctgaatt gtttgatcaa aattggaagt ctgatttgat taaagaattt gagcatattg 1800 acgatttcga aaaaagattt gtgacttttc taactaataa atcaggtgga cagaaaagtg 1860 aggaacctac attgtcaaaa gaattaaaag gcatttctaa cgctagagtg attgcttttg 1920 ctcttaatag gaatgattat catgacgaat taaaatttat aaaaatgtta atggcttatg 1980 gtaaatgtgc tattcgattt caaattgatc gtcgtgctag ggtgattgtc attgtaccaa 2040 atgcaattca atcgagtgaa ttattcttac ttcttggttt taacgtttta aaaactaaca 2100 aaaaacataa tgacaagatc gctgttggaa aacaaattgg taatttatta gacgcgagag 2160 ttcaaatgtg taatactgga gatgtcagtt ctgttaaaaa ttctggagac atgaagggca 2220 tggatgccca tactattcct aaccttacat tatttttaag aaataaaatg atcgaagtgc 2280 tttttgaatt agatcctagc aaaagttgtt ctaatttctt ttttagtgaa gataaagaat 2340 atactttaaa agagaagcat ccaaaatttg aggaaattta taaccgtaaa ttaagaggag 2400 ttgttatcca tgccgctaaa tgcttattct acatgttctc catgaatatg tacttagaag 2460 atcatttctt tgcagatagt caaactgtat cagaccaaac ttttcaaacc ggcttttttg 2520 caacatcagc tcaacacact ttgtttttaa gtttgttttt attaaatttg gaacgtaaat 2580 tctttgccaa gctagacaat aaaatgatat ctgttatgca ttctgtgatg ggtgacgacg 2640 tcttagaggt tatcaagaat ggagtgaaat ttcctgacaa ggtaagaagt tggttgtctc 2700 ttaggaagaa tgatttagct aaattaaatt atgaggaaga attgtcgtta tctagaatgt 2760 atggagtctt tcttcagcaa gctgctttat tgggagttta tgttccttat ccttcgagaa 2820 tgtcattatt ttgtgatgaa cgttctgata ctactaagcg tcacactctg gatatgatta 2880 aaattgttat ggatgtcatt tcagctaaag ctcaacgatc atatggaata gataatggtt 2940 tgggaattgg ctatagtatt tggagttgtc atcgtagttc aagatatatt tattctgatt 3000 ttgataagtc taaagtttcg cagttattag agatggacaa aaccttcgat tttaatttca 3060 ttgtatcgca cgatgaaaca gaaaagtcaa tccgttttat ttatcctttc gttactgtca 3120 tgtgttctcc tatttcttgg cctatgttaa cctttgtaat gaatgatatt tctgacccta 3180 ataagtttat aacatataaa agtaaagctt ttacttctct taacggtgat ggtgcttata 3240 tgctaattaa tcaaatgttt tttaccagca acgaacaaca catgttccaa tttgttgact 3300 acgtcaaaca tcagtcgaaa attgttgaac tcaaattaaa ctcaaatttt ttgaattggg 3360 aagctagaca tcattggggt tttacattcg gagagcattt actgcgtttt aaacgtttgc 3420 gtcatctgac agagagcaga aaaaatgaac ttggattggg agatatcgaa gttatggttc 3480 ataatttgaa taaatattta gatggcaatc gggtgttgtt aagttttaat agtatttcag 3540 tgctcaaggc tcataagatt gaagtgcctt acggattaat gtacgcgaat cataatagat 3600 caaaaatcga tcaatctttg actgttagaa cagaatctct cgaagaaagg gtatatttgg 3660 attctatatt tttgaagcat atgctagatt ataaaactgt gcctaaagat ttagaagtac 3720 tgaagactca tgctctctgt tccgttcgtt taagaattta tggtgatttt gattatgctt 3780 gtgaaaaaga tggtgttatc gaacctagtt ctgacgctca gttcaatatc attttacctt 3840 tcttacctgg ctaccattta aacagtgctt atggcaaatt atttttgtat tccactttgc 3900 ccaccgtgca tgatagagat atttccggta ctttaggaga aataacagga tctttaggcg 3960 cttcttttga tgtagatgct gcgatagaat ttggtgcaca tgtgtttaat attaatccaa 4020 gtttggttga tgccgcaggc actgctattg ggattcctca aggattattg aatcattata 4080 aaaatttggt taacgctttt gtcactaata acttcaattt aaaatatcat tccatatttt 4140 taaacgtaaa atattttggt ttaaatggca gtttaaaaca tttttctact tttggagact 4200 attcaagtcg tcttgttcgc tttgacttaa tacataagtt ggatagatat cataatgttt 4260 ttgtacgtga ttttattttt gcttacattc atgaacttaa tgggcgcaga gtgtatctcg 4320 attatagttt gcatagtttg ctgttagtca tgtctcgagg atctataaag tgttttacat 4380 ctcatctctc tcaattattt aatcctatgc ttactctgga gttcgactga taaggcgttc 4440 ccgattttga aactatgaag tgagcgtggt tagtgtccat ggcggaaaca gcagatgtc 4499 //