ID HM581941; SV 1; linear; genomic RNA; STD; VRL; 4768 BP. XX AC HM581941; XX DT 17-APR-2011 (Rel. 108, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate Pepper2 CY-CN segment M, complete DE sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4768 RX DOI; 10.1007/s00705-011-0935-x. RX PUBMED; 21327785. RA Lee J.S., Cho W.K., Kim M.K., Kwak H.R., Choi H.S., Kim K.H.; RT "Complete genome sequences of three tomato spotted wilt virus isolates from RT tomato and pepper plants in Korea and their phylogenetic relationship to RT other TSWV isolates"; RL Arch. Virol. 156(4):725-728(2011). XX RN [2] RP 1-4768 RA Lee J.-S., Choi H.-S., Kim M.-K., Kim K.-H.; RT ; RL Submitted (21-JUN-2010) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 39cc1b08e7f464d4b33e247f0e06e053. XX CC GenBank Accession Numbers HM581940-HM581942 represent the complete CC genome of Tomato spotted wilt virus isolate Pepper2 CY-CN. XX FH Key Location/Qualifiers FH FT source 1..4768 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="pepper" FT /isolate="Pepper2 CY-CN" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2009" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:F4ZD16" FT /protein_id="AEB33902.1" FT /translation="MLTLFGNKGSSKSARKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGSSEKQIKKQLKELSSNLER FT SVEEEEERISDSVAQLSFDEI" FT CDS complement(1277..4684) FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:F4ZD17" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:F4ZD17" FT /protein_id="AEB33903.1" FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHP FT EVYDDSAENEVPTAASIQRKAILETLANLMLESQTPGTRQIREEESTIPIFAESTTQKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASVTFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETEHGYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLIILSQM FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG FT PNDCIENQNCAAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGTIFLLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDSHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKVVVDLPSDLFKVAPKRPSITSTSL FT NCNGCLLCGQGLSCILEFSSDLTFSTAISIDVCSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDIFVEVLVNNVIVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLVIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4768 BP; 1533 A; 849 C; 848 G; 1538 T; 0 other; agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactc ttttcggtaa 120 caaggggtct tctaagtctg ccagaaagga tgaaggtcct ttagtttcac ttgctaaaca 180 taatggtaat gttgaagtct ctaagccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagaaggaa catcttcttt 300 tggaacctat gaatcagatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcaaaac gcaaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tccaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctggtcg atcccaacat gccatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt ctattccgaa 660 aatgaataac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagataaaa gttgcatggt catacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaagggagca gtgagaagca 900 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg aagaagaaga 960 ggaacggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaatg 1020 tcacttattt aagcttaaat ttctgttaat tttgcatttt aaatcaaaaa ccaaaacaaa 1080 aaacaaaaaa agaaaaacaa aaaatcaaaa acaaaaaaca aaaacaaaat aaggctgaaa 1140 agccaaactt tggtccgaag actctttttg ttgttttttg ttatttgtat tttttgtttg 1200 ttttttgttt gttttatata tacataatct gactaatgta gaagattgaa tcaaatttag 1260 cctgtgacaa gcagactcag acaaggtgag agaaatccat aggtggcctt cgtcttgtca 1320 ttgtatcttt catcaacata ggggctttga tctcagaatc atcatcatcc tctatcttgg 1380 atctagattt ataagattca ttcttgacat atcctttaca aatggttgtt agaatagaac 1440 agaaataaat cacgaggaaa atgaatgcaa taagcaatat cactctgata gtatcaaaaa 1500 atgagccaaa ataacttgca atgaaattga atgggctttt aatataatcc cagaagcccc 1560 atgctgaaga atcagaatta tattgttgtt cttcatgagc atactcatca ttttgatcta 1620 ttatgttctc tggttcttct acaataacat tattgaccag aacttccaca aaaatatccg 1680 gattgccttc tgggtacaac gtcattttct tcttgtctgg attagcagaa caaaacattg 1740 ttatgttgta tttattagat ccttttttaa cagccagctg ataagtagat agagagcaaa 1800 catctataga aattgcagta gaaaatgtca aatctgagga aaattctaaa atgcaagata 1860 aaccttgacc gcatagaaga cagccgttgc aatttaaact tgttgaagtt atggaaggtc 1920 ttttaggagc aactttaaaa agatcagatg gaagatcaac gacaacctta agttttccta 1980 aactgaaagc tttttccaag aaaaaactag agaagtcttt aaaactgacg ggaatatctg 2040 atatttgctc taaaccagat ctaaatctgt atgtgtcata tccgcatgtt ttaatagtga 2100 ttgatttttt ccctattgct gcacaatccc aagacatgtc atcaccttct agagttttct 2160 tagtaaaaat aggcactcca tcatgagtca attgtgggtg accaaacatt ttcacaggat 2220 cattcaagtt tgcaatattt ccagaataaa tatggctgtc aggtccatga gctatcagtt 2280 cacctatagt gataccatca ttgtgcaaat ctgcttgtat atcagcttga aacaaggcat 2340 tttcataagg aacctcttca gtaatccttg agcactgacc tcctaaaatg ccagaaatac 2400 aaacatctgc cactatagtt gattttagta ctgaataaat tctgtatgat ttatccatgt 2460 catagatatt ccgacagaat ccgcatgtag caccttcatt aattgcaaaa caccaagctt 2520 cttcacatcc ccaataagaa gttggtgtta tacaaaaatc ttggaaacca gttaaagctt 2580 gattttttct gcaagtgtca cagtttcctg tacaagtgga ataaaaatct gtgtgagtgc 2640 tttggatagg agctgttgtg tatttttctg acacttcata atgaattccc acacttttga 2700 tataaatcac aaattttttt gctgtttctg aggtcttatc atttaacaag aatatagtcc 2760 ctcctcctcc taaaagagat tgttctatca tgtatctata tttcccgtct acaacagaat 2820 caaagatcaa tgattgtcta ggcagaatgt tctctggtat gcttgtttcg ttcttgttta 2880 gagaatctcc agcgatcatt ccagaaattt tgtctgtacg attataagaa tctattatac 2940 cattcctcaa tctcttagcc tcatacagac caaccgatgt taaccctaaa gagcttcctg 3000 tataatctga aaacccatta tacaaaggtt tattccgaaa taaatctagg tactcacaac 3060 ccagtctgca ttttataaga ttatcaatag atgggtgtgc agcacaattc tggttttcta 3120 tgcaatcatt aggaccttct ataacaatgt tagtgccaaa gatactttct ataatcttat 3180 cttctttcac attacagtaa cattgatctt tttctgggca tttttcaaat ttgcttgtaa 3240 ccaaaaatgg acagcctgga acataaaaac atccactcaa acattgggta gtttgagcca 3300 tagacatggg catttgagac aaaatgatca aacctattaa gatttcagtc acaaatttca 3360 gcaaactaaa gctcagctta gtgttcacta ttagatggaa ccattccatg ctagtccact 3420 tgtgtttgtt gtagccatgt tctgtttctt tggacagtat gggacactct gaagaatgtt 3480 cttttgaagc tttgcttttg ttgcagatgc aaattttagt acattcatgt gtgattatgc 3540 acaaattgcc acagttagaa catttaaatg gaaaatattt ccataagcaa tttataagca 3600 acaaaatagg gtatgtgatc aagcctataa gatcatacca gagaaagagg ggtttggttg 3660 tcttgtttac tagccaccgg atagggaaat agatcagcaa agctatcaat attaatctta 3720 tccaagaaaa attgatgcag gctgtttgtt tataaatgct ttttgaatat ttgattatac 3780 aatctctaac tcttttgttt gtttttggta ttttagctga tttgtcaccg cacaagagat 3840 tgtgctcacc atccagcatt tcttcagtaa aagtgacgct tgctgatcca gaaaaggata 3900 tgaccttgtg ttccacattt tcaccaggct tttttatcaa ataacccatg atcttctcag 3960 ggctagtgat gctaacagta tagggattgg caaagttcga tttagttatt ttgcagtcac 4020 cagataactt tacagtttgt aatgatactg ttccattagt ggggtacgag ttataagtta 4080 taggataatt atcttgtgtt aagctctctg aaataaagaa ttttgttcca actgaaaaat 4140 gccttttgtt gtcaagtttg gtaatgggaa taacagggac tttggagaat ctctttggca 4200 gatttaaaga attgtcacat ttttctaaac cttccgctga atcagacaca caggaatata 4260 tgacaccatt attttccact tgataataaa cattataagt ggatatccct tttatctcac 4320 attttaatga agaagcattc aagcagttgt taggaagatc tgagacagag attgtttttt 4380 gcgtagttga ctcagcaaaa atagggatgg ttgattcttc ttctcgtatc tgacgggttc 4440 caggggtctg agattctagc atcagattag ctaaagtctc caagatagcc ttgcgttgaa 4500 tcgatgcagc ggtgggtact tcattctcag cagaatcatc ataaacctca ggatggtctc 4560 cacgaattat ttctactttg gcatctgtgg ctctgaagat caagaatgcc aacaagacag 4620 aactcaaggc aattgtgaaa agactcactt ttaccactag ttctagtagt tttaaaattc 4680 tcatcttaga cgtctgctca gattataatg gttatatgat taattgaaag atgtctggat 4740 taaggttttt gtttgcactg attgctct 4768 //