ID HM581936; SV 1; linear; genomic RNA; STD; VRL; 2968 BP. XX AC HM581936; XX DT 17-APR-2011 (Rel. 108, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate Tomato NJ-JN segment S, complete DE sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-2968 RX DOI; 10.1007/s00705-011-0935-x. RX PUBMED; 21327785. RA Lee J.S., Cho W.K., Kim M.K., Kwak H.R., Choi H.S., Kim K.H.; RT "Complete genome sequences of three tomato spotted wilt virus isolates from RT tomato and pepper plants in Korea and their phylogenetic relationship to RT other TSWV isolates"; RL Arch. Virol. 156(4):725-728(2011). XX RN [2] RP 1-2968 RA Lee J.-S., Choi H.-S., Kim M.-K., Kim K.-H.; RT ; RL Submitted (21-JUN-2010) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; 2ec3b10306782101df910d36a9c14230. XX CC GenBank Accession Numbers HM581934-HM581936 represent the complete CC genome of Tomato spotted wilt virus isolate Tomato NJ-JN. XX FH Key Location/Qualifiers FH FT source 1..2968 FT /organism="Orthotospovirus tomatomaculae" FT /segment="S" FT /host="tomato" FT /isolate="Tomato NJ-JN" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2008" FT /db_xref="taxon:3052585" FT gene 89..1492 FT /gene="NSs" FT CDS 89..1492 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:F4ZD08" FT /protein_id="AEB33894.1" FT /translation="MSSSVYESIIQTKASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSININDSVLALSVCSNT FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS FT CVKEHTYKVEMCYNQALGKVNVLSPNRNVHEWLYCFKPNFNQVESNNRTVNSLAVKSLL FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQISIQKLFKVAGDETNKTFYLSI FT ACIPNHNSVETALNISVICKHQIPIRKCQAPFELSMMFSDLKEPYNIVHDPSYPQRIVH FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT FT LECLPSNTQTMSYLDSIQIPSWKIDFARGEIKISPQSVSVAKSLLKLDLSGIKKKESKI FT SEAYDSGSK" FT gene complement(2041..2817) FT /gene="N" FT CDS complement(2041..2817) FT /codon_start=1 FT /gene="N" FT /product="nucleocapsid protein" FT /db_xref="GOA:F4ZD09" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:F4ZD09" FT /protein_id="AEB33895.1" FT /translation="MSKVKLTKENIVALLTQSKDLEFEEDQNLVAFNFKTFCLENLDQI FT KKMSIISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS FT VVLAIYQDAKHKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA" XX SQ Sequence 2968 BP; 952 A; 549 C; 469 G; 998 T; 0 other; agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat cgcaacactg 60 taataagaac acagtaccaa taaccataat gtcttcaagt gtttacgagt cgatcattca 120 gacaaaagct tcagtctggg gatcaactgc atctggtaaa gctgttgtag attcttactg 180 gattcatgaa cttggtactg gttctccact agttcaaacc cagttgtatt ctgattcaag 240 aagcaaaagt agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga 300 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta gcatcaatat 360 taatgactct gttctggcac tatctgtttg ctcaaataca gtcaatacta acggagtgaa 420 acatcaaggt catttgaaag ttttgtctcc tgctcagctc cactctattg gatctaccat 480 gaacagatct gatattacag accgattcca gctccaagaa aaagacataa ttcccaatga 540 cagatacatt gaagctgcaa acaagggctc tttgtcttgt gttaaagagc atacctataa 600 ggtcgagatg tgctacaatc aagctttggg caaagtgaat gttctatccc ctaacagaaa 660 tgtccatgaa tggctgtact gtttcaagcc aaatttcaat caagttgaaa gcaacaacag 720 aactgtaaat tctcttgcag tgaaatctct gctcatgtca gcagaaaaca acatcatgcc 780 taactctcag gcttttgtaa aagcttccac tgattctcat ttcaaactga gcctctggct 840 aagagttcca aaggttttaa agcagatttc cattcagaaa ttgttcaaag ttgcaggaga 900 tgaaacaaac aaaacatttt atttatctat tgcttgcatt ccaaaccata acagtgttga 960 gacagcttta aacatttctg ttatttgcaa gcaccagatc ccaattcgta aatgtcaagc 1020 tccttttgaa ttatcaatga tgttttctga tttaaaggag ccttacaaca ttgttcatga 1080 tccttcatat ccccagagga ttgttcatgc tctgcttgaa actcacacat cttttgcaca 1140 agttctttgc aacaacttgc aagaagatgt gatcatctac actttgaaca actatgagct 1200 aactcctgga aagttagatc taggtgaaag aaccttaaat tacagtgaag atatctgcaa 1260 aaggaaatat ttcctttcaa aaacacttga atgtctacca tctaacacac aaactatgtc 1320 ttacttagac agcatccaga tcccttcctg gaagatagac tttgccaggg gagaaattaa 1380 aatttctcca caatctgttt cagttgcaaa atctttgtta aagcttgatt taagcgggat 1440 caaaaagaaa gaatctaaga tctcggaagc atatgattca ggatcaaaat aatcttgctg 1500 tgtccagctt tccctaatta tgttatgttt attttctttc tttacttata attatttctc 1560 tattttgtaa tttcttttga atttctcctg tttaatagaa accataaaat aaaaataaaa 1620 ataaaaataa aaatcaaaat gaaacaaaaa tcaaaaaatg aacaaaaatc aaacaaaaat 1680 caaaaaatga aataaaaaca acaaaaaaat aaaaaacaaa aaaccaaaaa agatcccgaa 1740 agggacaatt ttggccaaat ttgggttttg tttttgtttt ttgtttgttt tttgttttta 1800 ttttattttc atttttattt atttatttta ttttattttt atttttattt tatttttatt 1860 ttcattttat gtttttgttg tttttgttat tttgtttatt attaagcaca acacacagaa 1920 agcaaacttt aattaaacac acttatttta aatttaacac actaagcaag cacaagcaat 1980 aaagataaag aaagctttat atatttatag gcttttttat aatttaactt acagctgctt 2040 ttaagcaagt tctgcaagtt ttgcctgttt tttaaccccg aacatttcat agaacttgtt 2100 aagagtttca ctgtaatgtt ccatagcaat acttccttta gcattaggat tgctggagct 2160 aagtatagca gcatactctt tccctttctt cacctgatct tcattcattt caaatgcttt 2220 gctttttagc acagtgcaaa cttttcctag ggcttccctg gtgtcatact tttttggatc 2280 gatcccgagg tctttgtgtt ttgcatcctg atatatagcc aagacaacac tgatcatctc 2340 aaagctatca actgaagcaa taagaggtaa gctacctccc agcattatgg caagcctcac 2400 agactttgca tcatcaagag gtaatccata ggcttggatc aaagggtgag aagcaatctt 2460 agatttgata gtattgagat tctcagaatt cccggtttcc tcgacaagcc tgaccctgat 2520 caagctatca agccttctga aggtcatgtc agtggctcca atcctgtctg aagttttctt 2580 tatggtaatt ttaccaaaag taaaatcact ttgcttaata accttcatta tactctgacg 2640 attcttcagg aatgtcagac atgaaataat gctcatcttc ttgatctggt caaggttttc 2700 cagacaaaaa gtcttgaagt tgaatgctac cagattctgg tcttcctcaa attcaagatc 2760 tttgctttgt gtcaacaaag caacaatgtt ttccttagtg agcttaacct tagacatgat 2820 gatcgtagaa gttgttatat gctttgaccg tatgtaattc aaggtgcgaa agtacaactc 2880 tgtattccgc agtcgtttct tagggtttta atgtgatgat ttgtaagact gagtgttaag 2940 gtttgaataa aattgacaca attgctct 2968 //