ID HM581935; SV 1; linear; genomic RNA; STD; VRL; 4783 BP. XX AC HM581935; XX DT 17-APR-2011 (Rel. 108, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Tomato spotted wilt virus isolate Tomato NJ-JN segment M, complete DE sequence. XX KW . XX OS Orthotospovirus tomatomaculae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4783 RX DOI; 10.1007/s00705-011-0935-x. RX PUBMED; 21327785. RA Lee J.S., Cho W.K., Kim M.K., Kwak H.R., Choi H.S., Kim K.H.; RT "Complete genome sequences of three tomato spotted wilt virus isolates from RT tomato and pepper plants in Korea and their phylogenetic relationship to RT other TSWV isolates"; RL Arch. Virol. 156(4):725-728(2011). XX RN [2] RP 1-4783 RA Lee J.-S., Choi H.-S., Kim M.-K., Kim K.-H.; RT ; RL Submitted (21-JUN-2010) to the INSDC. RL Department of Agricultural Biotechnology, Seoul National University, RL Gwanakno 599, Seoul 151-921, South Korea XX DR MD5; d7f85f2f2446459d1f625b569cc32fbb. XX CC GenBank Accession Numbers HM581934-HM581936 represent the complete CC genome of Tomato spotted wilt virus isolate Tomato NJ-JN. XX FH Key Location/Qualifiers FH FT source 1..4783 FT /organism="Orthotospovirus tomatomaculae" FT /segment="M" FT /host="tomato" FT /isolate="Tomato NJ-JN" FT /mol_type="genomic RNA" FT /country="South Korea" FT /collection_date="2008" FT /db_xref="taxon:3052585" FT gene 101..1009 FT /gene="NSm" FT CDS 101..1009 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:F4ZD06" FT /protein_id="AEB33892.1" FT /translation="MLTFFSNKGSSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMSSEKQV FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER FT SVEEEEGGISDSVAQLSFDEI" FT CDS complement(1292..4699) FT /codon_start=1 FT /product="glycoprotein precursor" FT /db_xref="GOA:F4ZD07" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:F4ZD07" FT /protein_id="AEB33893.1" FT /translation="MRFLKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEIIRGDHL FT EVYDDSAENEVLTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAESTTEKT FT ISVSDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA FT SKEHSSECPILSKETDHDYNKHEWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM FT PMSMAQTTQCLRGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG FT PNDCIENQNCVAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA FT KRLRNGIIDSYNSTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ FT SLLGGGGAIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKIAPKRPSITSTKL FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI FT KSPFNFIASYFGSFFDTIRVILLIAFIFLAIYFCSILTTICKGYVKNESYKSRSKIEDD FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV" XX SQ Sequence 4783 BP; 1551 A; 847 C; 840 G; 1545 T; 0 other; agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat caatcaatta 60 cattacacaa gctcctctac cttaggctgt tgaactcaaa atgttgactt ttttcagtaa 120 taaggggtct tctaagtctg ccggaaagga tgaaggtcct ttagtttcac tagctaaaca 180 taatggtaat gttgaagtct caaaaccatg gtcttcttct gatgaaaagc ttgctttgac 240 taaagctatg gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt 300 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt ctgcaagaat 360 gatagtagat acaaaccatc atatctcaaa ctggaaaaat gatctttttg ttggcaacgg 420 gaagcagaac gctaataagg tcatcaagat ctgtccaact tgggacagca gaaaacaata 480 catgatgatt tctaggattg tgatatgggt ctgccccact ataccaaacc ctacaggaaa 540 acttgtggtt gccctagtcg atcccaacat gtcatctgaa aagcaagtca ttctgaaggg 600 tcaggggaca ataactgatc ccatatgttt tgtcttttat ctgaactggt ctattccaaa 660 aataaacaac actccagaaa actgctgtca gctgcatttg atgtgcagcc aagaatacaa 720 gaagggggtt tcttttggta gtgtcatgta ttcttggaca aaggagtttt gtgattcacc 780 cagagctgat aaagacaaaa gttgtgtggt tatacctcta aacagagcta ttagagctag 840 atctcaagca ttcattgagg cttgcaagct gataattcct aaaggaaata gtgaaaagca 900 gattaaaaaa cagcttaaag agttgagctc aaatcttgag agatcagttg aagaagaaga 960 gggagggatt tctgatagtg ttgctcagtt atcttttgat gaaatatagt acttttaata 1020 ccacttattt aagcttaaat ttctgttaat tttgcatttt taaatcaaaa aacaaaacaa 1080 aaacaaaaaa caaaaaagaa aaacaaaaaa caaaaaaatc aaaaaaagaa aaaacaaaaa 1140 caaataaggc tgaaaagcca aactttggtc cgaagactct ttttgttgtt ttttgtttat 1200 ttgtattttt tgtttgtttt ttgtttattt atatatacat aatctgacta atgtagagaa 1260 ttgaatcaaa tttagcctgt gacaagcagc ctcagacaag gtgagagaaa tccataggtg 1320 gccttcgtct tgtcattgta tctttcatta acataggggc tttgatctca gaatcatcat 1380 catcctctat cttggatcta gatttataag attcattctt gacatatcct ttacaaatgg 1440 ttgttagaat agaacagaaa taaatcgcaa ggaaaatgaa tgcaataagc aatatcactc 1500 tgatagtatc aaaaaacgag ccaaaataac ttgcaatgaa attgaatggg ctcttaatat 1560 aatcccagaa gccccatgct gaagaatcag aattatattg ttgttcctca tgagcatact 1620 catcattttg atctattatg ttctctggtt cttctacaac aacattgttg accagaacct 1680 ccacagaaat atctggattg ccttctggat acaacgtcat tttcttcttg tccggattag 1740 cagaacaaaa cattgttatg ttgtatttat ttgatccttt tttaacagcc agttgataag 1800 tagatagaga gcaagcatct atagaaattg aagtagaaaa tgtcaaatcc gagaaaaatt 1860 ctaaaatgca agataaacct tgaccgcata gaagacagcc gttgcaattt aattttgttg 1920 aagttatgga aggtctctta ggagcaattt taaaaagatc agatggaaga tcaacgacaa 1980 tcttgagttt gcctaaactg aaagcttttt ccaagaaaaa actagagaaa tccttgaaac 2040 taacaggaat atctgatatt tgctctaaac cagatctaaa tctgtatgta tcatatccgc 2100 atgttttaat agtgattgat tttttcccta ttgctgcaca atcccaagac atgtcatctc 2160 cttctagagt tttcttagta aaaataggca ctccatcatg agtcaattgt gggtgaccaa 2220 acattttgac aggatcattc aagtttgcaa tatttccaga ataaatatgg ccgtcaggtc 2280 catgagctat cagttcacct atagtgatac catcattgtg caaatctgct tgtatatcag 2340 cttgaaacaa agcattttca taaggaacct cttcagtgat ccttgagcac tgacctccta 2400 aaataccaga aatacaaaca tctgccacta tggttgattt tagcactgaa taaattctgt 2460 atgatttatc catgtcatag atattccgac agaatccaca tgtagcacct tcattaattg 2520 caaaacacca agcttcttca catccccaat aagaagttgg tgttatacaa aaatcttgga 2580 aacctgttaa agcttgattt tttctgcaag tgtcacagtt tcctgtgcaa gttgaataaa 2640 aatctgtgtg agtgctttgg ataggagctg ttgtgtattt ttctgacact tcataatgaa 2700 ttcccacact tttgatataa atcacaaatt ttttggctgt ttccgaggtt ttatcattca 2760 acatgaatat agctcctcct cctcctaaaa gagattgttc tatcatgtat ctatatttcc 2820 catctacaac agaatcaaag atcaatgatt gtctaggcag aatgttctct ggtatgcttg 2880 tttcattttt gtttagagag tctcctgcaa tcattccaga aattttgtct gtactattat 2940 aagaatctat tataccattc ctcaatctct tagcttcata cagaccaacc gatgtcaacc 3000 ctaaagagct tcctgtataa tccgaaaatc cgttatacaa aggtttgttt ctaaataaat 3060 ctaggtattc gcaacctaat ctgcatttta taagattatc aatagatggg tgtgcaacgc 3120 aattctggtt ctctatgcaa tcattaggac cttctataac aatgttagtg ccaaagatac 3180 tttctataat cgtatcttct tttacattac agtaacattg atctttttca gggcatttct 3240 caaatttgct tgtaaccaaa aacggacagc ctggaacata aaaacatcct cttaaacatt 3300 gggtagtttg agccatagac atgggcattt gagacaaaat gaccaaacct attaagattt 3360 cagtcacaaa tttcagcaga ctgaagctaa gcttagtgtt cactattaga tggaaccatt 3420 ccatgctagt ccactcatgt ttgttgtagt catgatctgt ttctttggac aatatgggac 3480 actctgaaga atgttctttt gaagctttgc ttttgttgca gatgcaaatt ttagtacatt 3540 catgtgtgat tatgcacaaa ttgccacagt tagaacattt aaatggaaaa tatttccata 3600 agcaatttat gagcaacaaa atagggtatg tgatcaagcc tataagatca taccagagaa 3660 aaaggggttt ggttgtcttg tttactaacc accggatagg gaaatagatc aacaaagcta 3720 tcaatattaa tcttatccaa gaaaaattga tgcaggctgt ttgtttataa atgctttttg 3780 aatatttgat tatgcaatct ctaactcttt tgtttgtttt tggtatttta gctgatttgt 3840 caccgcacaa gagattgtgc tcaccatcca acatttcctc agtaaaagtg atgcttgctg 3900 atccagaaaa agatatgacc ttgtgttcca cattttcacc aggctttttt atcaaataac 3960 ccatgatctt ctcagggcta gtgatgctaa cagtataggg attagcaaag tttgatttag 4020 ttattttgca gtcgccagat aacttcacag tttgtaatga tactgttcca ttagtagggt 4080 acgagttata agttatagga taattatctt gtgtcaggct ttctgaaatg aagaattttg 4140 tcccaactga aaaatgcctt ttgttgtcaa gtttggtaat aggaataact gggactttag 4200 agaatctttt tggcagattt aaagaattgt cacatttttc taaaccttct gctgaatcag 4260 aaacacagga atatatgaca ccattatttt ccacttgata ataaacatta taagtggata 4320 tcccttttat ctcacatttt aatgaagaag cattcaagca gttgttggga agatccgaga 4380 cagagattgt tttttccgta gttgattcag caaaaatagg gatggttgat tcttcttctc 4440 gtatctggcg ggttccagga gtctgagatt ctagcatcag attagttaaa gtctccaaga 4500 tagccttgcg ttgaattgat gcagcagtga gtacttcatt ctcagcagaa tcatcataaa 4560 cctcaagatg gtctccacga attatttcta ctttggcatc tgtggctctg aagatcaaga 4620 atgccaacaa gacagaactc agggcaattg tgaaaagact cacttttacc actagttcta 4680 gtagttttaa aaatctcatc ctagacgtct gctcagatta taatggttat atgattaatt 4740 tcaagatgtc tggattaagg tttttgtttg cactgattgc tct 4783 //