ID HM480374; SV 1; linear; genomic RNA; STD; VRL; 8241 BP. XX AC HM480374; XX DT 11-AUG-2010 (Rel. 105, Created) DT 10-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Calhevirus 1 non-structural protein and capsid protein genes, complete cds; DE and unknown gene. XX KW . XX OS Calhevirus 1 OC Viruses; Riboviria; Picornavirales; unclassified Picornavirales. XX RN [1] RP 1-8241 RX DOI; 10.1128/JVI.00601-10. RX PUBMED; 20668077. RA Kapoor A., Simmonds P., Lipkin W.I., Zaidi S., Delwart E.; RT "Use of nucleotide composition analysis to infer hosts for three novel RT picorna-like viruses"; RL J. Virol. 84(19):10322-10328(2010). XX RN [2] RP 1-8241 RA Kapoor A., Simmonds P., Lipkin I., Zaidi S., Delwart E.; RT ; RL Submitted (09-JUN-2010) to the INSDC. RL Center for Infection and Immunity, Columbia University, 722 West 168th RL Street, New York, NY 10032, USA XX DR MD5; 98909c97a36076e4ac0e77f39e4eb21c. DR EuropePMC; PMC2937767; 20668077. DR EuropePMC; PMC6189175; 30323210. XX FH Key Location/Qualifiers FH FT source 1..8241 FT /organism="Calhevirus 1" FT /host="Homo sapiens" FT /mol_type="genomic RNA" FT /country="Afghanistan" FT /isolation_source="stool of a 14 month old child suffering FT from acute flaccid paralysis" FT /collection_date="10-Nov-2007" FT /db_xref="taxon:870710" FT CDS 226..5379 FT /codon_start=1 FT /product="non-structural protein" FT /note="includes viral helicase, trypsin-like serine FT protease and RNA dependent RNA polymerase" FT /db_xref="GOA:E0A3Q6" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:E0A3Q6" FT /protein_id="ADK97705.1" FT /translation="MENSAERCEPLFVMFSGGPRMGKTMFVNTLISALRMRFAAMEGTD FT GQMRQTSILAQENRWVYSRNTDDQFFSGYNKQCLIFYDDLFTANNSKESSPAGQRHELE FT LSEIQKLVSSQPYAPPTPEVGAGVPCPKGTYINPAFVVATSNFALANSGCRSSDVIDDR FT IGELILVTVDPNVVKDASFSHLRFWRLITKVSRFRDLCDARGAWQHPYGIEKQFPYTHE FT EFGEWKMRDQFAEVNVQDLLEIFIEGHERRLVELQIRRQGAQNIVIGSQCDTIDNLETS FT YRAICDRFDLQPVNDFRARCMAYGLAKTLEGTRTFDGNRLRSDPNGSVRFYMAGGVLTS FT EDPGEERKCACPGGHVSMVTCPDFEKLVLCFSYSSSRDASPVKPVPPFIVFGANIVRSR FT TPIPSDVPFWSTVFQSLALAYGGLRPISMDVFGEPISLDFGGVAPVVIDGLVRGLACVF FT PEVAEVAYVNQDGQVRKCSRAFVREPVEMVPHSLHWNCGDVLRHVMEMRTKSDAPEPSQ FT EEVDAVVWACAQIYVNPKLKLDKRLSDKLRSDFEFLKRTSVPTEEGPTWNMIWLVNFRQ FT TVTESCERQNITIPRFSEMLDSEFFTFYAFSSMYYGYFAWRYLSHMLLQAMINRAEINC FT PLYVEMVRDASDKVVVQIKHHDYPDSYVMCREVGASQFDMQLITYQLRDACNMSQQQIM FT DNLTEIGSLVAFADALIGVDELTWFEKLNNALSFMWDVLRADAKTVVTCLAAAAGALAV FT GAVGMMLKDTFVSKKKPSYTAHSYPFHRPRADQVSAWPDCYQRLIRICDHPTTTIVNDR FT RGRRFCPLCSNFSRITPSNWDKTKEKIIVDDLYKRNQRPPHLKNYLLAMLIFNERCLPL FT LPSDDMEQVQRTLKRYALNHEVPYAAARMTRHLYVFPAWNCMLTRKKALAAIRAQSDVL FT RSYLGGFNGEPMYQVQLDFCRSCEIPSVEVECCEQVATCKHYQQHAYYLPESTVKYSAT FT DKAIAVASSGMGFLMSNGLVRGRGAIVGDGVIITAAHVIRQDIEMSTEWFWRGQTKFSF FT FLNRMNVIIVPETDIALIKVQGDELPAAAYENIWSCDKPTPGTKVSLISLDHDLRKTPI FT VATVLSKKTAAMTEHFFLVDKAMEPGDSGSLVIQGGRIVGHYNGVIEGKFGVICHWPST FT TLKAVKCLRRSELFDSRFVQYIDEDHGFAVLDEFDTSIADSSPPSAERKTELFDAFKDM FT GIESVKFPASQSLEALSNSFEKFQHVTETFSADYAIAAEELASHLKTQILLEHGELQPF FT ETWDEAINGRAEGESRQLKKIDTSTSAGAPWCDYGIDKKYFIDDTNHDWLRCKPNLVEL FT MDKVEAKFKTGDVAGFTATSNNKDELRDPERVKQKKTRLFCATPMHHNIMFRKYYGRWI FT AAFKALDFKTGMHAMGSDVFGTDWNDLYNYLMSPPSNDPKYSEPVFLAGDFSRFDTSHS FT GWKMNLAFKVAAACNADKEMSDILSRSISRFAVRFRNREFKVPAGLPSGCQMTTPINCI FT LNTLLWVTVWRRLTGHNLASFMKNCRLIVYGDDVVLGIDKHNPYFKFLTPRRIQEVMRD FT LGYELESADSKELRWQQIHEVTFLKRRFIRDKINPNLIHAPRPLEEVYTQLMWRRSEPT FT LESQQCCFYAFAAEVGQYPPEVQRNVYGRLLEAIRRSKSELMKQAISTISFEAMMNRAW FT NKQLLIEDVARFRSMFWKLW" FT CDS 5432..6217 FT /codon_start=1 FT /product="unknown" FT /note="highly basic protein" FT /db_xref="UniProtKB/TrEMBL:E0A3Q7" FT /protein_id="ADK97706.1" FT /translation="MNADFPAQVTLLGYLRQVFSLFNHNLRIDRLQFRRLYRINALSWS FT DFKIYVSIFFLHLRLLFIDLRFAGSVARIEVSRFCREIRNKRLDFSRRLSESNQVTKKK FT IVRCFDNIDTSIQESNHRIRLHFEKLSQRYRDFDKDTQQKIREAFIKKKPQNRPEIKHL FT THTAVPLGPCILTGCPPTKRKRVGPCIGDISDCVPLPEGFVICRYQLRKPRLTLHHTLL FT TSADSQVQTYLTGAKSSVTKPSLDKELSLHRPQKGPLYL" FT CDS 6046..8007 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:E0A3Q8" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E0A3Q8" FT /protein_id="ADK97707.1" FT /translation="MSLSTEETAIDVTSHPADISRLASADVLDWREILSHKTVLGQGTL FT PPSSPKGSTLFVTNVAPLYLRSDTQKTVISHLAELFSQWHGDLLFEVVLTIPYFAATKL FT VVAFAPTNISLVNMSAATMAGLHNSVILNPANNYSVTLRVPFISVTNWCPTAAGVGEIG FT CKLLEPIVSSLELNQGLPWTLLVSADPDSFRFRYIIPPIIEGSGEDPVHNVPTLGDNVI FT SISMSTTAGKVEGQRAVSRWPLVQQSPNSLSLQYESMMLIPRSRVEFVMQKVRGQFPLG FT GYPLDVIANMFDVAAFTYDKLQPFVLPNPFVIFPYLTQPFRLQTTTSSTTVGVDAPVYV FT YQSGTDCKLWFQVPMDARELPTGTVMFFSFIPSSDPIPAISTCTYEGTHTQSNVKYFKF FT RSIGQFKNQSQVVQCAVAAWKPTNLHVNSIISALRQIDQCPGEITHMALYTTMPPDLAA FT TFTEWLVTSDNTSPPAQALSYSISFSPNQSSLAYNAGRFSESPKARGVIWRLFKLFKGD FT ETKWWAWLVKGLDVIVDALIGAFLGRADTHYVVPIGAGSGFRVQAVGAYDPKLVAKSDP FT VPLEYIPKRETRSIVDIQLHEETRRFFRLRSKSASGSRGETASRPVSLSPSTSRAHSKT FT YKAKHLLTPEHRFRLQAS" XX SQ Sequence 8241 BP; 2111 A; 1877 C; 1997 G; 2256 T; 0 other; ctctcagatt tgctacctcg gataagttca tttcttgcag cgcggcccat cggatattca 60 ggacctggta cacaagcgtt cgttgaagaa ggacggtcac tcattcatcg ccttgacgaa 120 tgtgtgaagg acgttactgc tgttgatggt gcaggtcacg tgctaaattc tcttacgcga 180 atgcgtctca atgtgaccgc agcgattgag acttctctat tcacgatgga aaacagtgct 240 gaacggtgtg agcctctttt cgtgatgttt agtggtggcc ctcggatggg taaaacaatg 300 tttgtgaaca cgttgatttc cgcgttgagg atgcgcttcg ccgcgatgga aggaacggat 360 ggacagatgc ggcagacgtc gatacttgcg caagagaatc gctgggtgta ctcacgtaac 420 acggatgatc agtttttctc tgggtacaat aaacagtgtt tgatattcta tgacgattta 480 ttcacagcta ataatagtaa agaatcgtcc ccagcagggc agagacatga attggagctg 540 tcagaaattc agaagttagt ctcttcgcag ccatatgcgc caccaacacc tgaggtcggc 600 gcgggtgtcc catgtccaaa agggacttac ataaaccctg catttgtagt ggccacgtcg 660 aattttgctc tagcgaattc tggctgccga agctcagatg ttatcgatga tcgaataggt 720 gaactcatac tggtcactgt agaccccaac gtggttaagg atgcatcgtt ctcacacttg 780 cgtttctggc ggctaatcac taaagtctct cgatttcgcg atctctgtga cgcacgtgga 840 gcttggcagc acccatatgg aatcgagaaa caatttccat acacgcacga ggagtttggt 900 gagtggaaaa tgagggatca atttgcagag gtgaatgtgc aagatctgct tgagatattc 960 atcgaggggc acgagaggcg tttggttgag ttgcagatac gccggcaagg tgcccagaac 1020 atcgtaattg ggagccaatg tgatactatt gacaatttag aaacatcgta ccgcgctata 1080 tgtgacagat tcgatttgca acccgtcaat gattttcgag cccgctgtat ggcgtacggg 1140 ttggccaaaa cacttgaggg aacgcgaacg tttgatggca atcgcctacg ttctgaccca 1200 aatgggtccg tgcgatttta catggctgga ggagtgctaa ccagtgagga tcctggagaa 1260 gagaggaaat gtgcctgtcc tggaggacac gtctctatgg ttacatgccc cgattttgag 1320 aagctcgtgt tgtgtttttc atattcgtca agtagagatg cgagtccagt gaaacctgtg 1380 ccaccgttta tagtctttgg tgcaaatatc gtgaggtcgc gtacgccaat cccttctgac 1440 gtgccctttt ggagtacagt cttccaatca cttgccctcg cttacggtgg tttgcgacca 1500 attagtatgg acgtctttgg ggaaccaatt tccctcgatt ttgggggagt ggcgccagtt 1560 gtgatagatg gcctcgttcg tggattggca tgcgttttcc cggaggtcgc tgaagtggca 1620 tacgtcaatc aggatggtca agtgagaaag tgtagtagag cctttgtcag agaacctgta 1680 gaaatggtcc cacattccct ccattggaac tgtggtgatg ttcttcggca cgtgatggag 1740 atgcggacga agtctgatgc tcctgagcct tcacaggaag aagtggatgc tgtggtgtgg 1800 gcatgtgccc aaatttatgt gaatccgaag ctgaagcttg acaagaggtt atcagataaa 1860 ttgcggtcag atttcgaatt cttaaagaga accagtgtac ccacagagga aggtccaaca 1920 tggaatatga tatggcttgt taatttccgg cagacagtaa cagaatcgtg tgagcgacag 1980 aatattacga taccaaggtt ttcggagatg ctcgactcag aatttttcac cttctacgcc 2040 tttagtagca tgtactatgg gtactttgcg tggaggtatt tatctcacat gctgctccaa 2100 gcaatgataa atagggccga aataaattgt cctctttatg ttgaaatggt gcgtgacgcc 2160 tcagacaagg ttgtagtgca aatcaagcac cacgattatc ccgattccta tgttatgtgt 2220 cgagaggtgg gtgcttctca gtttgacatg caacttataa cgtaccagtt acgagatgct 2280 tgcaacatgt cccagcagca aattatggat aatttaacgg agattggttc actcgtggct 2340 tttgcggacg cgcttattgg cgtggatgaa ctcacatggt ttgaaaaact taataatgcc 2400 ttatcattta tgtgggacgt tttgcgcgca gatgcgaaga cggtggtaac gtgcttagca 2460 gctgccgcag gcgccttggc ggtgggagcc gttggaatga tgttgaagga cacatttgtt 2520 agcaaaaaga agccatcgta cacagcgcat tcctacccct tccacaggcc gcgtgcagac 2580 caggtgagtg cctggcccga ttgttatcag aggctgatca ggatttgtga ccaccctacc 2640 acgacgattg ttaacgaccg tcgagggcgt cggttctgtc cattatgctc taatttctcg 2700 aggatcacac cctcgaattg ggacaagacg aaagaaaaaa taatcgttga tgacctctat 2760 aaaagaaacc aacgacctcc ccatctcaag aattacctgc ttgcgatgtt aatattcaac 2820 gaacggtgct tacccctgtt accgtccgat gacatggagc aggtgcaacg aacgctaaaa 2880 agatatgcac ttaaccacga ggtcccatac gccgcagcaa ggatgacgcg ccacttgtat 2940 gtttttccag cgtggaactg catgttgacg aggaagaaag ctttggctgc aattcgtgca 3000 caaagtgacg tgcttaggtc gtatcttggc ggtttcaatg gcgaacccat gtaccaagtc 3060 cagcttgact tttgtcggtc ttgtgagatc ccatctgttg aggttgaatg ttgtgaacaa 3120 gttgcaacct gcaagcatta ccagcagcat gcttattacc tgcccgagtc cacggttaaa 3180 tattctgcta ctgacaaggc cattgcagtt gcgagctccg gaatgggctt ccttatgtcc 3240 aatggtttag ttcggggacg tggtgccatc gtaggcgatg gcgtcattat cactgctgcc 3300 catgtaattc ggcaagatat cgaaatgagt actgagtggt tttggcgcgg tcagacgaaa 3360 ttttccttct ttctgaacag gatgaacgta attattgttc ctgaaactga tatcgcactc 3420 atcaaggtac aaggagatga gttgcccgca gcagcttacg agaacatttg gtcatgcgat 3480 aagccaacac ctggaaccaa ggtaagccta atatctttgg accacgacct gcgtaagacc 3540 ccgattgttg caactgtcct ctcgaagaaa actgctgcaa tgacggagca tttcttctta 3600 gttgacaaag cgatggaacc tggcgactca ggctccctcg tgatacaggg tggacgaatt 3660 gttggacact acaatggtgt tatagaagga aaatttggtg tcatatgcca ctggccatca 3720 acaactttga aggcagttaa gtgtttgcgt cggtctgaat tatttgactc acgcttcgtg 3780 caatacattg atgaggacca tgggtttgct gttttggatg aatttgacac gagcatcgcc 3840 gacagtagtc ctccatcagc ggagaggaag acagagttat ttgacgcttt taaggatatg 3900 ggaatagaat ctgtcaaatt tcctgcgagc caaagtctag aagcactgtc gaacagtttc 3960 gagaaattcc aacatgtgac tgagactttc tcagctgatt atgccattgc tgctgaggaa 4020 ctcgcgtcgc acctcaaaac acagatactt ttggaacacg gcgaattaca acccttcgaa 4080 acgtgggacg aagcaatcaa tgggagagct gaaggtgagt cgcggcagct taaaaaaatt 4140 gatacaagta cgtcggcagg tgccccttgg tgcgactatg gtattgataa aaagtatttt 4200 atcgatgaca cgaatcacga ttggctgagg tgcaaaccga atttggttga actaatggac 4260 aaggttgagg ctaaattcaa gactggcgac gtagctggtt ttactgctac ttcaaacaat 4320 aaggatgaat tgcgtgaccc agaacgggtc aaacaaaaga agacacgtct gttttgtgca 4380 acacccatgc atcacaacat tatgttccga aagtactatg gtcgatggat tgcagcgttt 4440 aaagctctcg attttaaaac aggtatgcat gcgatgggtt cggatgtttt tggaacggac 4500 tggaacgact tgtataatta tttgatgtcc ccgccatcaa atgaccccaa gtactccgaa 4560 ccagtctttt tagcggggga tttctcgcgt tttgatacaa gccactcggg gtggaaaatg 4620 aaccttgctt tcaaagttgc ggcagcctgc aatgcggaca aagagatgag tgacatacta 4680 tcccgttcca tctctcggtt tgctgtgcgg ttccgtaata gggagtttaa ggtgcctgct 4740 ggccttccat caggatgtca aatgaccact ccaataaact gcattctgaa tacgctgctt 4800 tgggtgactg tttggcggcg actcactgga cataaccttg caagtttcat gaagaactgt 4860 cggttgattg tttacggaga tgatgtggtt ttgggaatcg acaaacacaa cccatacttc 4920 aaattcctta cgccacgacg catccaggag gtcatgagag acctcggtta tgagttggaa 4980 tctgcagata gtaaggaact ccgatggcaa caaattcatg aggtgacgtt cctaaagagg 5040 cgatttatcc gtgacaaaat taatccaaat ttgatccacg caccgcgacc actagaagag 5100 gtatacacgc agttgatgtg gcgtcgcagt gagccgacgc ttgaatcgca acagtgctgt 5160 ttttatgctt ttgcagctga agttggccaa tatccgcctg aggttcagag aaatgtgtat 5220 gggcgcctac ttgaagccat tcgacggtca aagagtgagt taatgaaaca ggcaataagc 5280 accatatcgt ttgaggcaat gatgaaccga gcgtggaaca agcaactcct tattgaggat 5340 gttgctcgtt ttcgtagcat gttctggaag ttgtggtaac ggcgggaagt tatcccgcaa 5400 tttactgtga gaagttatct cacaatctac aatgaacgca gactttccag ctcaagttac 5460 cttgctcggg tatcttcgcc aagttttcag tttgttcaat cataatttga gaattgatag 5520 actccagttc agacggttat atcgaatcaa cgcgctatct tggtcagact ttaagattta 5580 cgtttccatc ttcttcctcc atttgcggct tctatttatt gatcttcgtt tcgctggatc 5640 cgtggcccga attgaggtat cacgtttttg tagagaaatt cgtaacaagc gacttgattt 5700 tagtagaagg ttgtcagaga gtaaccaggt cactaagaag aagattgttc ggtgtttcga 5760 caacatcgac acaagcatcc aggaatccaa tcaccgtatc cgtctgcatt ttgaaaaact 5820 ttctcagcga taccgtgatt ttgataaaga cacgcagcag aaaattcgtg aggcgtttat 5880 taagaagaaa ccacaaaatc gccccgagat caaacacttg acccacactg ctgtccctct 5940 tggcccgtgt atacttactg gttgccctcc tacgaagaga aaaagagttg gtccttgcat 6000 tggtgatatc tctgattgtg ttccattacc tgaaggtttt gtaatatgtc gctatcaact 6060 gaggaaaccg cgattgacgt tacatcacac cctgctgaca tcagcagact cgcaagtgca 6120 gacgtacttg actggcgcga aatcctcagt cacaaaaccg tccttggaca aggaactctc 6180 cctccatcgt ccccaaaagg gtccacttta tttgtaacaa atgttgctcc cctctatctc 6240 cggtcggaca cccaaaaaac tgtaatttcc catttagcag aacttttttc ccagtggcat 6300 ggagatctct tgtttgaggt tgttttaact atcccctact ttgccgccac taaattggtt 6360 gtagctttcg cccccactaa tatttccctt gtaaatatgt ccgcagccac gatggcgggg 6420 ttgcacaatt ctgtcatctt aaatcctgct aacaattatt ctgttacgct ccgagtccca 6480 ttcatatccg tcacgaactg gtgccccaca gcggctggag ttggagagat tggatgtaag 6540 ctccttgagc ctattgtctc atctcttgag ctcaatcaag gtttgccatg gacgttacta 6600 gtttctgcgg atcccgattc ctttagattt aggtatatca ttccccccat catcgagggc 6660 tctggtgaag atcctgtaca taacgtgcca accctcggtg ataatgtcat atcaatatct 6720 atgtcaacga ctgcaggcaa ggtggagggt cagcgggctg tttcgcgatg gccgttggtg 6780 cagcaatcgc caaacagttt atctcttcaa tacgagagta tgatgttgat cccgcgatcc 6840 agagtggagt ttgttatgca gaaggtgcgg gggcaatttc cgctcggggg gtatcccttg 6900 gacgtgattg ccaatatgtt tgatgttgcg gcgtttacat atgataaact tcaaccattc 6960 gtactcccga acccctttgt catttttcct tatcttacgc aaccattccg actccagacc 7020 acgacctctt ctacaactgt tggtgtcgat gcccccgtgt atgtgtacca gagtggcact 7080 gactgtaagc tttggttcca ggtacctatg gacgcccgtg aattgccaac tggaactgtc 7140 atgttcttct cattcattcc ctcatctgat cccatacccg ccatatccac gtgtacatat 7200 gaaggcactc atactcagtc taatgtcaag tattttaaat ttcgctccat tggtcaattt 7260 aagaatcaga gccaggtcgt gcagtgtgcc gttgcagcat ggaaaccaac aaatcttcat 7320 gtcaatagca taatttccgc tctccggcag attgatcagt gtccaggcga gatcactcat 7380 atggcccttt ataccactat gccacctgat cttgcggcta cgttcaccga atggctcgtg 7440 acttctgaca atacttcccc tcctgcacag gccctttcat actctatttc attttcacct 7500 aatcaatcat ctttggcata caatgcgggc cgtttttccg aatccccaaa ggcacgtggg 7560 gttatatggc gtctcttcaa gttgttcaaa ggcgatgaaa ctaaatggtg ggcgtggctt 7620 gtcaaggggc ttgacgtaat agttgatgcc ctgattggtg cgttccttgg gagagcagac 7680 acgcactatg ttgtacccat tggcgcgggc tctggatttc gcgttcaagc tgttggggct 7740 tacgatccga aattggtagc caaatccgat ccagtccccc tcgagtatat cccgaagcgt 7800 gaaacccggt ctattgttga tatacaactg catgaggaga ctcgtcggtt ttttcgactt 7860 agatctaaat ccgcatccgg atctcgagga gaaacggctt cacgcccagt gtccttatca 7920 ccatcaacgt cgagggcaca ctcaaagaca tataaagcga agcacctcct caccccggaa 7980 catcgatttc gccttcaggc gtcgtaaaac ttacgtgcct tccctttttt ctttagattc 8040 ttatcgactg ttttccccaa ttacgcccat tttattttgt gtatagacta catttaacac 8100 tataaaataa cacgtcgcgt ccgagatata taaacaccga aatctaccaa aatatttgta 8160 gccacctctc cgacgatgtg agatgactat ctgtgtcgag tctacataga aaacgggggg 8220 gcgggggggc aaaaatataa a 8241 //