ID HM468427; SV 1; circular; genomic DNA; STD; VRL; 2748 BP. XX AC HM468427; XX DT 02-JAN-2012 (Rel. 111, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Cotton leaf curl Kokhran virus strain Pakistan/Multan/2008/stocksii1, DE complete genome. XX KW . XX OS Cotton leaf curl Kokhran virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2748 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2748 RA Nawaz-ul-Rehman M.S., Fauquet C.M.; RT ; RL Submitted (07-JUN-2010) to the INSDC. RL ILTAB, Danforth Plant Science Center, 975 N Warson Rd., St. Louis, MO RL 63132, USA XX DR MD5; 6e0584976948454b723f781488c94c17. XX FH Key Location/Qualifiers FH FT source 1..2748 FT /organism="Cotton leaf curl Kokhran virus" FT /host="Gossypium stocksii" FT /strain="Pakistan/Multan/2008/stocksii1" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collected_by="M S Nawaz-ul-Rehman" FT /collection_date="Apr-2008" FT /proviral FT /db_xref="taxon:222464" FT gene 132..488 FT /gene="AV2" FT CDS 132..488 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:G9B5D2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:G9B5D2" FT /protein_id="AEI17650.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPPSELRQPIRVPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCS" FT gene 292..1062 FT /gene="AV1" FT CDS 292..1062 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:G9B5D3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:G9B5D3" FT /protein_id="AEI17651.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYACRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDRPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQHEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1059..1463) FT /gene="REn" FT CDS complement(1059..1463) FT /codon_start=1 FT /gene="REn" FT /product="replication enhancer protein" FT /db_xref="GOA:G9B5D4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:G9B5D4" FT /protein_id="AEI17652.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRAFLMNRDI FT ITVQIQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFRTQGLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFVDQSSSIKFNIY" FT gene complement(1204..1608) FT /gene="TrAP" FT CDS complement(1204..1608) FT /codon_start=1 FT /gene="TrAP" FT /product="transcriptional activator protein" FT /db_xref="GOA:G9B5D5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:G9B5D5" FT /protein_id="AEI17653.1" FT /translation="MQSSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHNHGFTHRGTHHCSSSREWRVYLGDSKSPVFQDNRAPQSSIPNEQRHHHRPDTVQSQP FT EESVGDTQMFHSFPNLDDLTASDWSFLKSL" FT gene complement(1511..2593) FT /gene="AC1" FT CDS complement(1511..2593) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:G9B5D6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:G9B5D6" FT /protein_id="AEI17654.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIE FT KDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWAAENVVSAAARANRPISVVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLESPLY FT SGSNQSAAQASQEGDQTSES" FT gene complement(2137..2439) FT /gene="AC4" FT CDS complement(2137..2439) FT /codon_start=1 FT /gene="AC4" FT /product="transcriptional regulator protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:G9B5D7" FT /protein_id="AEI17655.1" FT /translation="MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPA FT PTSNPTSRRTGTFSTGGNFRSTEGQQEEGNRQPMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2748 BP; 738 A; 559 C; 628 G; 823 T; 0 other; accggatggc cgcgcgattt ctttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taattctccc gcttattata agtacttcgt tgctaagtat 120 gcgtttgaaa aatgtgggat ccactgttaa atgagttccc cgacaccgtt cacggtttta 180 ggtgtatgtt agcagttaaa tatttgcagt tagtagagaa aacttactct cctgatacat 240 tgggttacga tttgataagg gatttaatcc tggtaataag ggctaggaat tatgtcgaag 300 cgaccagcag atataatcat ttccacgccc gcttcgaagg tacgccgccg tctgaacttc 360 gacagcccat acgcgtgccg tgctgctgcc cccattgtcc gcgtcaccaa agcaaaagca 420 tgggcgaaca ggcccatgaa cagaaagccc aggatgtaca ggatgtacag aagtccagat 480 gttcctagag gatgtgaagg tccatgtaag gttcagtcgt ttgagtccag acatgatatt 540 cagcatatag gtaaagtaat gtgtgttagt gatgttactc gtggtactgg gctgacccat 600 agagttggta agagattttg tgttaagtct gtttatgtgt tgggtaagat ctggatggat 660 gagaacatta agacgaagaa tcacacgaat agtgtgatgt ttttcttggt tagagatcgt 720 agacctgttg atagacctca agattttgga gaggtattta atatgtttga taatgagccc 780 agtacggcga ctgtgaagaa tgttcatcgt gataggtatc aagttctgcg caaatggtat 840 gcaactgtca ccggtggaca atacgcttca aaggaacaag ctctcgtgaa gaaatttatt 900 agagttaata attatgttgt gtataaccag catgaagctg gcaagtatga gaatcattct 960 gagaatgctt taatgttgta catggcgtgt actcacgcct ctaacccagt gtatgctacc 1020 ttgaagatac ggatctactt ctatgattcc gtgacaaatt aatagatatt gaattttatt 1080 gaagatgatt ggtctacaaa tacaacatgt tgtaatacat tccataatac atgatcaact 1140 gctctaacta cattattaat actgacaatt cctaagttat ttaaatattt aagcccttga 1200 gtcctaaaga ctcttaagaa acgaccagtc ggaggctgtg aggtcatcca gattcggaaa 1260 gctatgaaac atttgtgtat ccccaacgct ttcctcaggt tgtgattgaa ctgtatctgg 1320 acggtgatga tgtctctgtt cattaggaat gctcgattgt ggtgctctgt tatcttgaaa 1380 tacaggggat tttgaatctc ccagataaac acgccattct ctgcttgagc tgcagtgatg 1440 agttcccctg tgcgtgaatc catggttgtg gcaggctaat gctatgaagt acgaacaccc 1500 acaagggaga tcaactctcc gacgtctggt ccccttcttg gctagcctgt gctgcacttt 1560 gattggaacc tgagtagagt gggctctcga gggtgatgaa gattgcattc tttaaagccc 1620 aatttttgag tgcagaattc ttctcttcat ccaaaaactc tttatagctt gaattgggtc 1680 ctggattgca gaggaagata gtgggaattc cgcctttaat ttgaactggc ttcccgtatt 1740 ttgtatttga ttgccagtcc ttttgggccc ccatgaactc cttaaagtgc tttaggtaat 1800 gcgggtcgac gtcatcaatg acgttaaacc aggcgtcatt actgtatacc cttgggctca 1860 gatctagatg tccacacaga taattatgtg gacctaatga tctggcccac atcgtcttcc 1920 ccgtcctact gtcaccctca atcactacac ttattggtct attggcccgc gcagcggcac 1980 tgacgacgtt ctcggcagcc cacacttcaa gttcttctgg aacttgatcg aaagaagaag 2040 aggaaaaagg agaaacataa ggagctggtg gctcctgaaa gattctgtct agatttgcat 2100 ttaaattatg aaattgcagt acaaaatcct taggagctag ttccttaatg actctaagag 2160 cctccgactt acttcccgcg ttaagtgctg cggcgtaagc gtcattggct gtctgttgcc 2220 ctcctcttgc tgaccttccg tcgatctgaa attgccccca gtcgagaatg tccccgtcct 2280 tctcgatgta ggatttgacg tcggagctgg atttagctcc ctgtatgttc ggatggaaat 2340 gtgctgacct gcttggggag accaagtcga agaatcgcat attctggcac ttgaatttcc 2400 cttcgaactg gatgagaaca tgcaagtgag gagtcccatc ttcgtgaagc tctctgcaga 2460 ttctaatata tttttttgaa gttggggttt gtatatttaa taattgggaa agtgcttcct 2520 ctttggtgag agaacatttg ggataagtta tgaaatagtt tttggaataa ataccgttcc 2580 gctttggagg catgttgact aaaattgatc accgattgac cgctcttgca actctccccg 2640 gtatatcggt gatcaatata tagtgatcac caaatggcat aatggtaata aaaaaacttt 2700 aatttgaaat tcaaaccaaa aggctaaagc ggccatccgt ttaatatt 2748 //