ID HM461867; SV 1; circular; genomic DNA; STD; VRL; 2761 BP. XX AC HM461867; XX DT 21-OCT-2010 (Rel. 106, Created) DT 21-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Cotton leaf curl Burewala virus clone lko new segment A, complete sequence. XX KW . XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2761 RA Kumar J., Kumar A.; RT "Molecular analysis of cotton leaf curl Burewala virus isolated from RT northern India"; RL Unpublished. XX RN [2] RP 1-2761 RA Kumar J., Kumar A.; RT ; RL Submitted (08-JUN-2010) to the INSDC. RL Molecular Virology Lab, National Botanical Research Institute, Rana Pratap RL Marg, Lucknow, Uttar Pradesh 226001, India XX DR MD5; e53ea4631fd27dc5452b018316690169. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Cotton leaf curl Burewala virus" FT /segment="A" FT /host="cotton" FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaf tissue" FT /clone="lko new" FT /db_xref="taxon:620894" FT gene 131..487 FT /gene="AV2" FT CDS 131..487 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:E3ULZ7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E3ULZ7" FT /protein_id="ADO41110.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDILDVQKSRCS" FT gene 291..1064 FT /gene="AV1" FT CDS 291..1064 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E3ULZ8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E3ULZ8" FT /protein_id="ADO41111.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRIYWMYRSPDVPRGCEGPCKVQSFEFYTSYQHNRYSNVCSDVTRGTGLTQY FT KLVRDFAVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNE FT PSTATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYEN FT HSENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1061..1465) FT /gene="AC3" FT CDS complement(1061..1465) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E3ULZ9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E3ULZ9" FT /protein_id="ADO41112.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSHPPTGLFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFIDQSSSIKFNIY" FT gene complement(1206..1610) FT /gene="AC2" FT CDS complement(1206..1610) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E3UM00" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E3UM00" FT /protein_id="ADO41113.1" FT /translation="MQSSSLSKDHCTQLPIIVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGSSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP FT EESVGDTQMFHSFPNLDDLTPSDWSFLKGL" FT gene complement(1507..2598) FT /gene="AC1" FT CDS complement(1507..2598) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:E3UM01" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E3UM01" FT /protein_id="ADO41114.1" FT /translation="MAPPKRFKVQTKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSVHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVVQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAINNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMRAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNHSTAQGSEETQQEEESRS" FT gene complement(2244..2684) FT /gene="AC4" FT CDS complement(2244..2684) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E3UM02" FT /protein_id="ADO41115.1" FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS FT LIHSAHSPKRKHSPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSAQITDS FT STWYPQPGQYISIRTFRELNQAQMSRPTSTRTGTLSSGESFR" XX SQ Sequence 2761 BP; 720 A; 545 C; 647 G; 849 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacccgctc aaagcttaaa taattctccc gcttattata agtacttcgt tgctaagtat 120 gcgtttgaaa atgtgggatc cactgttaaa tgagttcccc gacaccgttc acggttttag 180 gtgtatgtta gcagttaaat atttgcagtt agtagagaaa acttactctc ctgatacatt 240 gggttacgat ttgataaggg atttaatcct ggtaataagg gctaggaatt atgtcgaagc 300 gaccagcaga tataatcatt tccacgcccg cttcgaaggt acgccgccgt ctcaacttcg 360 acagcccata tgtgagccgt gctgctgccc ccattgtccg cgtcaccaaa gcaaaagcat 420 gggcgaacag gcccatgaac agaaagccca ggatatattg gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagttctac acatcatatc 540 agcataatag gtatagtaat gtgtgtagtg atgttactcg tggtactggg ctgacccaat 600 acaagttggt aagagatttt gctgttaagt ctgtttatgt gttgggtaag atctggatgg 660 atgagaacat taagacgaag aatcacacga atagtgtgat gtttttcttg gttagagatc 720 gtagacctgt tgataaacct caagattttg gagaggtatt taatatgttt gataatgagc 780 ccagtacggc gactgtgaag aatgttcatc gtgataggta tcaagttctg cgcaaatggt 840 atgcaactgt caccggtgga caatacgctt caaaggaaca agctctcgtg aagaaattta 900 ttagagttaa taattatgtt gtgtataacc agcaggaagc tggcaagtat gagaatcatt 960 ctgagaatgc tttaatgttg tatatggcgt gtactcacgc ctctaaccca gtgtatgcta 1020 ccttgaagat acggatctac ttctatgatt ccgtgacaaa ttaataaata ttgaatttta 1080 ttgaagatga ttggtctata aatacaacat gttgtaatac attccataat acatgatcaa 1140 ctgctctaac tacattatta atactgacaa ttcctaagtt atttaaatat ttaagcactt 1200 gagtcctaaa gacccttaag aaaagaccag tcggagggtg tgaggtcatc cagattcgga 1260 aagctatgaa acatttgtgt atccccaacg ctttcctcag gttgtgattg aactggatcc 1320 tgatcgtgag tatatccata ttcgtcgtga atggacggtt gacgtggctg atgatcttga 1380 aatagagggg atttggaact tcccagatat atgcgccatt ccctgcttga gctgcagtga 1440 tgggttcccc tgtgcgtgaa tccatggttg tggcagttga ttgacagata ataagaacac 1500 ccgcattcaa gatctactct cctcctcctg ttgcgtctct tcgcttccct gtgctgtact 1560 atgattggaa gctgagtaca gtggtccttc gagagtgatg aagattgcat tttttaaggc 1620 ccaattcttt aatgctgtgt ttttttcctc gttgaggaat tccttataac tgctgttcgg 1680 accaggattg cacaggaaga ttgtcggtat cccgccttta atttgaactg gctttccgta 1740 ttttgtgttg gactgccagt ctctttgggc ccgcatgaac tctttaaagt gtttgaggaa 1800 atgcgggtcg acgtcatcaa tgacgttgta ccaggcgtcg ttactgtata ctttgggact 1860 caggtccaga tgtccgcaca aatagttatg tggtcccaaa gatctagccc acatcgtctt 1920 ccccgttcga ctatctccct caattactat actccgaggt ctaaggggcc gcgcagcggc 1980 atcgacaacg ttattgatgg cccaaacttc aagttcttct ggaacttgat cgaaagaaga 2040 aggagaaaag ggagaaatat agggagccgg tggctcctga aagattctgt ctagatttgc 2100 atttaaatta tgaaattgta ctacaaaatc tttaggagct agttccttaa tgactctaag 2160 agcctctgac ttactgcctg cattaagtgc tgcggcgtaa gcgtcgttgg ctgtctgctg 2220 tcctcctctt gctgatcttc catctatctg aaactctccc cactcgagag tgtccccgtc 2280 cttgtcgatg taggccttga catctgagct tgatttagct ccctgaatgt tcggatggaa 2340 atgtactgac ctggttgggg ataccaggtc gaagaatctg ttatttgtgc agacgaattt 2400 gccctcgaac tggatgagca catggagatg agggctccca tcttcgtgta actctctgca 2460 gagtttgatg tattttttat tcgagggtgt gttgatggct tgaatttggg agagtgcttc 2520 ctctttggtg agtgagcact gtggataagt gatgaaataa tttttggttt gtactttaaa 2580 acgtttgggg ggagccattg actttggtca attagagaca actgatgggc ttttactctg 2640 ggaattggag actggataca atttatagtg tctccaaatg gcatattctg taaacaacta 2700 gaagttcgtt tgaaattcaa attccccttt gggctccaaa agcggccatc cgtataatat 2760 t 2761 //