ID HM461866; SV 1; circular; genomic DNA; STD; VRL; 2758 BP. XX AC HM461866; XX DT 21-OCT-2010 (Rel. 106, Created) DT 21-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Cotton leaf curl Burewala virus clone lko old segment A, complete sequence. XX KW . XX OS Cotton leaf curl Burewala virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2758 RA Kumar J., Kumar A.; RT "Molecular analysis of cotton leaf curl Burewala virus isolated from RT northern India"; RL Unpublished. XX RN [2] RP 1-2758 RA Kumar J., Kumar A.; RT ; RL Submitted (08-JUN-2010) to the INSDC. RL Molecular Virology Lab, National Botanical Research Institute, Rana Pratap RL Marg, Lucknow, Uttar Pradesh 226001, India XX DR MD5; 62db60040e56bc8495e29f5796c10cc1. XX FH Key Location/Qualifiers FH FT source 1..2758 FT /organism="Cotton leaf curl Burewala virus" FT /segment="A" FT /host="cotton" FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="leaf tissue" FT /clone="lko old" FT /db_xref="taxon:620894" FT gene 119..460 FT /gene="AV2" FT CDS 119..460 FT /codon_start=1 FT /gene="AV2" FT /product="movement/precoat protein" FT /db_xref="GOA:E3ULZ1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E3ULZ1" FT /protein_id="ADO41104.1" FT /translation="MRLKMWDPLLNEFPDTVHGFRCMLAVKYLQLVEKTYSPDTLGYDL FT IRDLILVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQ FT AHEQKAQDI" FT gene 291..1061 FT /gene="AV1" FT CDS 291..1061 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:E3ULZ2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E3ULZ2" FT /protein_id="ADO41105.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRIYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1058..1462) FT /gene="AC3" FT CDS complement(1058..1462) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:E3ULZ3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E3ULZ3" FT /protein_id="ADO41106.1" FT /translation="MDSRTGEPITAARAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNHNLRKALGIHKCFIAFRIWMTSHPPTGLFLRVFRTQVLKYLNNLGIVSINN FT VVRAVDHVLWNVLQHVVFIDQSSSIKFNIY" FT gene complement(1203..1607) FT /gene="AC2" FT CDS complement(1203..1607) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:E3ULZ4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E3ULZ4" FT /protein_id="ADO41107.1" FT /translation="MQSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGSSKSPLFQDHQPRQPSIHDEYGYTHDQDPVQSQP FT EESVGDTQMFHSFPNLDDLTPSDWSFLKGL" FT gene complement(1504..2595) FT /gene="AC1" FT CDS complement(1504..2595) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:E3ULZ5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E3ULZ5" FT /protein_id="ADO41108.1" FT /translation="MAPPKRFKVQTKNYFITYPQCSLTKEEALSQIQAINTPSNKKYIK FT LCRELHEDGSPHLHVLIQFEGKFVCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKAYI FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGD FT SRTGKTMWARSLGPHDYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL FT YSASNQSTAQGSEETQQEEESRS" FT gene complement(2136..2681) FT /gene="AC4" FT CDS complement(2136..2681) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E3ULZ6" FT /protein_id="ADO41109.1" FT /translation="MPFGDTINCIQSPIPRVKAHQLSLIDQSQWLPPNVLKYKPKIISS FT LIHSAHSPKRKHSPKFKPSTHPRIKNTSNSAESYTKMGALISMCSSSSRANSSAQITDS FT STWYPQPGQHISIRTFRELNQAQMSRPTSTRTGTLSSGESFRLMEDQQEEDSRQPTTLT FT PQHLMQAVSQRLLESLRN" XX SQ Sequence 2758 BP; 719 A; 545 C; 650 G; 844 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cctaccatta actcttgtcg gccaatcata 60 tgacccgctc aaagcttaaa taattctccc gcttattata agtacttcgt tgctaagtat 120 gcgtttgaaa atgtgggatc cactgttaaa tgagttcccc gacaccgttc acggttttag 180 gtgtatgtta gcagttaaat atttgcagtt agtagagaaa acttactctc ctgatacatt 240 gggttacgat ttgataaggg atttaatcct ggtaataagg gctaggaatt atgtcgaagc 300 gaccagcaga tataatcatt tccacgcccg cttcgaaggt acgccgccgt ctcaacttcg 360 acagcccata tgtgagccgt gctgctgccc ccattgtccg cgtcaccaaa gcaaaagcat 420 gggcgaacag gcccatgaac agaaagccca ggatatatag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtctaga catgatattc 540 agcatatagg taaagtaatg tgtgttagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gttaagtctg tttatgtgtt gggtaagatc tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtggacaa tacgcttcaa aggaacaagc tctcgtgaag aaatttatta 900 gagttaataa ttatgttgtg tataaccagc aggaagctgg caagtatgag aatcattctg 960 agaatgcttt aatgttgtat atggcgtgta ctcacgcctc taacccagtg tatgctacct 1020 tgaagatacg gatctacttc tatgattccg tgacaaatta ataaatattg aattttattg 1080 aagatgattg gtctataaat acaacatgtt gtaatacatt ccataataca tgatcaactg 1140 ctctaactac attattaata ctgacaattc ctaagttatt taaatattta agcacttgag 1200 tcctaaagac ccttaagaaa agaccagtcg gagggtgtga ggtcatccag attcggaaag 1260 ctatgaaaca tttgtgtatc cccaacgctt tcctcaggtt gtgattgaac tggatcctga 1320 tcgtgagtat atccatattc gtcgtgaatg gacggttgac gtggctgatg atcttgaaat 1380 agaggggatt tggaacttcc cagatatatg cgccattccc tgctcgagct gcagtgatgg 1440 gttcccctgt gcgtgaatcc atggttgtgg cagttgattg acagataata agaacacccg 1500 cattcaagat ctactctcct cctcctgttg cgtctcttcg cttccctgtg ctgtactttg 1560 attggaagct gagtacagtg gtccttcgag agtgatgaag attgcatttt ttaaggccca 1620 attctttaat gctgtgtttt tttcctcgtt gaggaattcc ttataactgc tgttcggacc 1680 aggattgcac aggaagattg tcggtatccc gcctttaatt tgaactggct ttccgtattt 1740 tgtgttggac tgccagtctc tttgggcccc catgaactct ttaaagtgtt tgaggaaatg 1800 cgggtcgacg tcatcaatga cgttgtacca ggcgtcgtta ctgtatactt tgggactcag 1860 gtccagatgt ccgcacaaat agtcatgtgg tcccaaagat ctagcccaca tcgtcttccc 1920 cgtccgacta tctccctcaa ttactatact ccgaggtcta aggggccgcg cagcggcatc 1980 gacaacgtta tcgatggccc aaacttcaag ttcttctgga acttgatcga aagaagaagg 2040 agaaaaagga gaaatatagg gagccggtgg ctcctgaaag attctgtcta gatttgcatt 2100 taaattatga aattgtagta caaaatcttt aggagctagt tccttaatga ctctaagagc 2160 ctctgactta ctgcctgcat taagtgctgc ggcgtaagcg tcgttggctg tctgctgtcc 2220 tcctcttgct gatcttccat caatctgaaa ctctccccac tcgagagtgt ccccgtcctt 2280 gtcgatgtag gccttgacat ctgagcttga tttagctccc tgaatgttcg gatggaaatg 2340 tgctgacctg gttggggata ccaggtcgaa gaatctgtta tttgtgcaga cgaatttgcc 2400 ctcgaactgg atgagcacat ggagatgagg gctcccatct tcgtgtaact ctctgcagag 2460 tttgatgtat tttttattcg agggtgtgtt gatggcttga atttgggaga gtgcttcctc 2520 tttggtgagt gagcactgtg gataagtgat gaaataattt ttggtttgta ctttaaaacg 2580 tttgggggga gccattgact ttggtcaatt agagacaact gatgggcttt tactctggga 2640 attggagact ggatacaatt tatagtgtct ccaaatggca tattctgtaa acaactagaa 2700 gttcgtttga aattcaaatt cccctttggg ctccaaaagc ggccatccgt ataatatt 2758 //