ID HM459852; SV 1; circular; genomic DNA; STD; VRL; 2609 BP. XX AC HM459852; XX DT 04-NOV-2010 (Rel. 106, Created) DT 04-NOV-2010 (Rel. 106, Last updated, Version 1) XX DE Tomato chino La Paz virus isolate pepper segment A, complete sequence. XX KW . XX OS Tomato chino La Paz virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2609 RX DOI; 10.1094/PDIS-06-10-0444. RX AGRICOLA; IND44433264. RA Cardenas-Conejo Y., Arguello-Astorga G., Poghosyan A., RA Hernandez-Gonzalez J., Lebsky V., Holguin J., Medina-Hernandez D., Vega S.; RT "First Report of Tomato yellow leaf curl virus Co-infecting Pepper with RT Tomato chino La Paz virus in Baja California Sur, Mexico"; RL Plant Dis. 94(10):1266-1266(2010). XX RN [2] RP 1-2609 RA Cardenas-Conejo Y., Arguello-Astorga G.R., Hernandez-Gonzalez J., RA Lebsky V., Holguin J., Pena S., Poghosyan A.; RT ; RL Submitted (06-JUN-2010) to the INSDC. RL Molecular Biology of Plants, Instituto Potosino de Investigacion Cientifica RL y Tecnologica (IPICyT), Camino a la Presa San Jose 2055. Col. Lomas 4 RL Seccion, San Luis Potosi, San Luis Potosi 78216, Mexico XX DR MD5; f5f0920c5fc01bcb120e70b23f269d5d. XX FH Key Location/Qualifiers FH FT source 1..2609 FT /organism="Tomato chino La Paz virus" FT /segment="A" FT /host="Capsicum annuum L." FT /isolate="pepper" FT /mol_type="genomic DNA" FT /country="Mexico:Baja California Sur" FT /collection_date="2008" FT /db_xref="taxon:240492" FT gene 182..937 FT /gene="AV1" FT CDS 182..937 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP; capsid protein; encapsulates the viral genome" FT /db_xref="GOA:E3ULS6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E3ULS6" FT /protein_id="ADP21186.1" FT /translation="MPKRDAPWRLMSGTPKVSRSSNYVPPDGLGRKFDKSSAWANRPMY FT RKPRIYRTVRSADVPRGCEGPCKIQSFEQRHDISHTGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPSGTAMDFGHLFNMFDNEPSTATV FT KNDLRDRFQVLHRFHAKVTGGQYASNEQTLVKRFWRVNHRVTYNNQEAARYENHTENAL FT MLYMACTHASNPVYATLKIRIYFYDSVLN" FT gene complement(934..1332) FT /gene="AC3" FT CDS complement(934..1332) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="rep-interacting protein; enhances function of Rep FT protein; AL3; REn" FT /db_xref="GOA:E3ULS7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E3ULS7" FT /protein_id="ADP21189.1" FT /translation="MDSRTGESITADQAENSVFIWEVPNPLYFTIIDVEDPIYTNTRIY FT HIQIRFNHNLRKALNLHKAYLNYQIWTTSVRASGTNYLSRFKYLVLLYLDRLGVICINN FT VIRAVRFATDKSYVNHVLENHSIKFKIY" FT gene complement(1079..1465) FT /gene="AC2" FT CDS complement(1079..1465) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TrAP; transcription activator; activation of late FT genes; silencing-suppressor; AL2" FT /db_xref="GOA:E3ULS8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E3ULS8" FT /protein_id="ADP21188.1" FT /translation="MQNSSSSTPPSIKPKHKIAKSRIRRKRIDLNCGCSFYQHIDCANH FT GFSHRGEHHCGSGREFRFYLGGSKSPLFHDNRCRGPNLHEHQDIPHPNTVQPQPEEGVE FT STQSIPQLPNLDDISSSFWDELLK" FT gene complement(1422..2465) FT /gene="AC1" FT CDS complement(1422..2465) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="Rep; rolling-circle replication protein; initiator FT of virus replication via a RC mechanism" FT /db_xref="GOA:E3ULS9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E3ULS9" FT /protein_id="ADP21187.1" FT /translation="MPLAPKKFLINSKNYFLTYPHCSLSKEETLEQLLRLNTPTNKKYI FT KIARELHEDGEYHLHVLIQFEGKFKTQNCRFFDLVSSTRSTHFHPNVQGAKSSTDVKSY FT VDKDGDTIEWGEFQIDGRSARGGQQTANDAAAEALNASSKEEAMRIIKEKLPKEFLFQY FT HNLSSNIDRIFAKAPEPWVPPFPLSSFTNVPDEMQEWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGPHNYLSGHLDFNPRVYSNDVEYNVIDDVTPQYLKMKHWKELIGA FT QKDWQSNCKYGKPVQIKGGIPTIVLCNPGEGASYKDFLEKEENASLKAWTLHNAKFIFL FT NSTLYQT" FT gene complement(2048..2305) FT /gene="AC4" FT CDS complement(2048..2305) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E3ULT0" FT /protein_id="ADP21190.1" FT /translation="MGNIISTCLSNSKANSKHKIADSSTWYPQPGQHISIRTFRELNQA FT PTSSPMSTRMEIQSNGENSRSTADLLEEVSKQLTTLPQRP" XX SQ Sequence 2609 BP; 647 A; 532 C; 600 G; 830 T; 0 other; accggatggc cgcgcttttt tgacccggcc catttcctga aatttcgtag aaatttacta 60 gataaagtta gccaatcagc gcacgcgtgt gcggtctaat tattaataac ttggcgacta 120 agtcgttttt ggtctataaa tttgtcgtta tgtgtgtggt ccagatatac atattttgaa 180 aatgcctaag cgggatgccc catggcgttt aatgtcgggt acccctaagg tgagtcgctc 240 ctctaattat gtccctcctg atggattggg ccgtaaattt gataaatctt ctgcttgggc 300 caacaggccc atgtacagaa agcccaggat atatcggacc gtaaggtctg ccgatgttcc 360 tcgaggctgt gaagggcctt gcaagattca gtcgtttgag cagcgtcacg atatctctca 420 cacagggaag gtgatgtgta tctccgatgt tactagaggc aatggcatta cccatcgggt 480 tggtaaacgt ttctgcgtta agtccgtgta tatattaggg aaggtttgga tggacgataa 540 catcaagctg aagaaccaca ctaacagcgt tatgttctgg ttagttaggg ataggaggcc 600 cagcggaacg gctatggatt ttggtcacct ctttaacatg tttgacaatg agcctagtac 660 cgccactgtg aagaacgatc ttcgagatcg tttccaagtg ctgcacaggt ttcatgccaa 720 ggttactggt ggtcagtatg ctagtaatga gcagacgttg gtgaagcgtt tttggcgggt 780 gaatcatcgt gtaacatata ataatcagga ggcggctcgg tatgagaatc ataccgagaa 840 cgctttaatg ttgtatatgg catgtactca tgcctctaac cctgtgtatg ctactcttaa 900 gatccggatc tacttttatg attcggtatt aaattaataa attttgaatt ttattgaatg 960 attttcaagt acatgattta catacgattt atctgttgcg aagcgaacag ctctaattac 1020 attattaata caaataacgc ctaacctatc taaatacaat aagactaaat atttaaacct 1080 acttaagtaa ttcgtcccag aagctcgaac tgatgtcgtc cagatttggt agttgaggta 1140 tgctttgtgt agattcaacg ccttcctcag gttgtggttg aaccgtattt ggatgtggta 1200 tatcctggtg ttcgtgtaga ttgggtcctc tacatcgatt atcgtgaaat agaggggatt 1260 tggaacctcc cagataaaaa cggaattctc tgcctgatcc gcagtgatgc tctcccctgt 1320 gcgagaatcc atggttggca caatctatat gctggtagaa tgagcagcca cagtttaggt 1380 ctatcctctt acgacgaatc ctcgattttg caatcttgtg tttaggtttg atagagggtg 1440 gagttgagga agatgaattt tgcattgtgg agtgtccagg ctttgagtga tgcgttttcc 1500 tctttctcga ggaagtcttt atagctggct ccctctcctg gattgcagag cacgattgtt 1560 ggtatcccac ctttaatttg aactggcttt ccgtatttgc agttggactg ccagtccttt 1620 tgggccccaa tcagctcttt ccaatgtttc atctttaaat attgtggagt tacgtcatca 1680 atgacgttgt actccacatc atttgagtaa accctaggat tgaaatccaa gtgtccactc 1740 aaataattat gtggtcctaa agcacgagcc cacattgtct ttcctgtcct cgaatcaccc 1800 tcgattatta tactaatagg tctctccggc cgcgcagcgg cacccctacc aaaataatca 1860 tcagcccact cttgcatctc gtccggaacg ttcgtgaagg aggagagtgg aaacggagga 1920 acccatggtt ccggagcctt agcgaatatc ctgtctatgt tgctagacag gttgtgatat 1980 tgaaaaagaa actctttggg gagcttctct ttaataattc gcattgcctc ctccttcgat 2040 gaggcattta gggcctctgc ggcagcgtcg ttagctgttt gctgacctcc tctagcagat 2100 ctgccgtcga tctggaattc tccccattcg attgtatctc catccttgtc gacataggac 2160 ttgacgtcgg tgcttgattt agctccctga acgttcggat ggaaatgtgt tgacctggtt 2220 gaggatacca ggtcgaagaa tcggcaattt tgtgttttga atttgccttc gaattggata 2280 agcacgtgga gatgatattc cccatcttcg tgtaattctc ttgcaatttt gatatatttt 2340 ttatttgtcg gagtgttcag ccgtaatagt tgctctaggg tttcttcttt cgataaagaa 2400 cagtggggat atgttagaaa ataatttttt gaatttataa gaaatttctt tggagctaag 2460 ggcatttttt gtaaatattt taggtatacc caattgagct ctcttcaaaa ctctgaggaa 2520 ttgggtatat tgggtcctta tttatactag aaggtcctat agaactttta atcgcatccg 2580 ctcaccgtgg cggccatccg aataatatt 2609 //