ID HM450380; SV 1; linear; genomic RNA; STD; VRL; 6171 BP. XX AC HM450380; XX DT 04-JUL-2010 (Rel. 105, Created) DT 21-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Astrovirus MLB1 HK05, complete genome. XX KW . XX OS Astrovirus MLB1 HK05 OC Viruses; Riboviria; Astroviridae; Mamastrovirus; OC unclassified Mamastrovirus. XX RN [1] RP 1-6171 RX DOI; 10.1099/vir.0.022764-0. RX PUBMED; 20554799. RA Chu D.K., Chin A.W., Smith G.J., Chan K.H., Guan Y., Peiris J.S., RA Poon L.L.; RT "Detection of novel astroviruses in urban brown rats and previously known RT astroviruses in humans"; RL J. Gen. Virol. 91(Pt 10):2457-2462(2010). XX RN [2] RP 1-6171 RA Chu D.K.W., Chin A.W.H., Smith G.J., Chan K.H., Guan Y., Peiris J.S., RA Poon L.L.M.; RT ; RL Submitted (05-JUN-2010) to the INSDC. RL Microbiology, The University of Hong Kong, Queen Mary Hospital, Pokfulam, RL Hong Kong XX DR MD5; 5eb8d5563518afd7f1e9cb0bd2345353. DR EuropePMC; PMC3052596; 20554799. DR EuropePMC; PMC3235140; 22174853. DR EuropePMC; PMC3311207; 22172277. DR EuropePMC; PMC3502403; 22998755. XX FH Key Location/Qualifiers FH FT source 1..6171 FT /organism="Astrovirus MLB1 HK05" FT /host="Homo sapiens" FT /isolate="MLB1 HK05" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /isolation_source="stool" FT /collection_date="2005" FT /db_xref="taxon:858367" FT gene 15..2378 FT /gene="ORF1a" FT CDS 15..2378 FT /codon_start=1 FT /gene="ORF1a" FT /product="ORF1a" FT /db_xref="GOA:D9MNL8" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:D9MNL8" FT /protein_id="ADJ38386.1" FT /translation="MAVPFHIGVSDKVMNLGSARSREWLNELPSTTLNQLRDIFPFEVP FT INTMIVPKPRYQLGTGVTLAVQGMVTLGCYSTYALDGEAWIEVDETRIDPKCAYVGTMA FT LDRVKLMDRNKELQLENASMSVDLQLTRHELERCRPTIIRPQRYGNFALFVLFFFLFFI FT LGTKAEDWHDQTQDYLVEFLKEAKQEIVSNLDTYYSLLLHVVRWEVVSCIIAIVSFFKL FT KRPCVAIIGLFLATISRYNYAALSIVPFLDVYSTVFLYTTMVVYFLVPHVAIITSLVCA FT LLFTIVSMVCAHHQFIIRVRGDWLVVLITIATYICDVMGIHTTAIAIAASLVRIYMCFP FT AANASVVEIKDSAGKVVQKTTLLPNWIGSMYQGARNMLQKVRTGVATFVRVNPNCLCHI FT RSEGCSGTGFRLGNDIVTAAHVVGNAVQVEVVYNNYVAQAKVRHIPDKDIAYLILPDGL FT KTMPVLKLAKNPNYEQVTIIALEGNCMLVSTTEGVCHGETISYACATRDGMSGAPVLDV FT NGNVLGVHQTNTGYTGGATVIRATDAAPYIDENAALKKEIEELKKMLREQTMNQRSVQD FT NEVVGIVRAAVQREIGILRDELNSCYQKKKGKNKKGRGARHRMLRRGQKFLTEEEYQEL FT LDKGLTREQLLDAIEEIVRARIGFPDWSDPEYSSEEDDATVTYWWEQVKESDYKDGVPQ FT FEHIVPKYSPNERVFSEQERKDVSEELSALQSIVDGVKKEDWEETKKQTTDALNHALYV FT VDKALAQHGYILFEQRMRPKNGKRGPRRRTPNTT" FT gene <2336..3850 FT /gene="ORF1b" FT CDS <2336..3850 FT /codon_start=1 FT /gene="ORF1b" FT /product="ORF1b" FT /db_xref="GOA:D9MNL9" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:D9MNL9" FT /protein_id="ADJ38387.1" FT /translation="RKKGSSEEDPKHYLDTWIGMLSPCVRWLVPERFPLYGGVPLDRPV FT YDFKVVNEDLLGLLPPPPNNDFEVFGPTVWDEIAYKKSFEKFEYADYVDFEQIYPECVA FT FADKKFLEHFNFLSDSSFVNILATDKNVDSTPAYPKMRWWLTESDYLEECGWEYYVKEF FT ENIASGQNPDVCWYLFLKKEIIKQQKIDEGDVRQIVCADPIYSRIGACFEQHQNAMMKD FT HTLLSSGQCGWSPFFGGYEARMSRLRSKGNKIFVELDWTRFDGTIPPTLLMHIKKLRFT FT LMGSMSRKYENVYKWYCRNLINRFVVLPSGEVTAQQRGNPSGQISTTMDNNMINYWLQA FT FEYKFLNLPEEEWMHFDTLIYGDDRISTYRSIPNEYTKIIVDMYKNVFGMWVKPEKVKV FT SESLEGLSFCGFTYTPNGPVPSEPYKLMASLLKPATKLPDLIALHGKLLCFQLLMANDT FT AHPFYGYIEQCLQYTHRALSDVSLPRRFTRRQLEYIWRGGPNDDYG" FT gene 3843..6113 FT /gene="ORF2" FT CDS 3843..6113 FT /codon_start=1 FT /gene="ORF2" FT /product="ORF2" FT /db_xref="GOA:D9MNM0" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR022027" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9MNM0" FT /protein_id="ADJ38388.1" FT /translation="MANASKGVTVNINNAKRMPRFTNNQRARSTRPNFTPAPKFRKRRF FT IPNRNRRRRQNTSTTGPKPAVSQTITATLGTVGSNLSDVVETECAVFLNPIIAKDSGAS FT ATFGPLQSLGAQYALWRLKWLEVRLQPLVGNSAVSGTVARVSLNMTTGPTLNSWSGLGA FT RIHKDVRVGSNLVWRIKQRLVSGPCETWWKTNTAEDPSLSLGPALEVHTIGKTMSTYKN FT EVFSSGLFLLEITGHWEFANYAASPALATLTQHKDDSETTKTLAISSDGANEPVEMLIP FT VNEWNMKAQYGGNGTLGEAIYQVVDTSVTVVTDLFPPPFSWIGKASWWFIRKMIGKTKQ FT FQVVVNGQNQTLTADVYRVYTSASAARDDKPAISSKAHEAKHLTGAVVITQISTDNILS FT ETTYTGPRSIVTPETPIGPSSYPMTPSSLVLMAGYFSGPEISDNFGKYMPLLFQQNTSK FT VTFRSGSHTIKIVSMVLVDRLMWLDKHFNQYTNEPDGVFGDVGNVFVDNDNVAKVITMS FT GSSAPANRGVTLMLCKATKNIQTFNFAATVYIPAYKVKDGAGGKDVVLNVAQWEANKTL FT TYPAIPKDTYFMVVTMGGASFTIQRYVVYNEGIGDGLELPAFWGKYLSQLYGFSWSSPT FT YACVTWEPIYADEGIPHRSALNDDEVSSDGDTDDDTDTEDEDEFFGEDPMAALHALDEK FT RPARRAMFDALVKTGVSVEEASRCVLRACPTKLQIKKRNLYESLLCDGLSPESSYEEAY FT NCK" XX SQ Sequence 6171 BP; 1845 A; 1117 C; 1381 G; 1828 T; 0 other; ccaagagtgg tggtatggct gtgcctttcc atattggtgt gtcagacaaa gttatgaatc 60 tgggttcagc tcgctcacgt gagtggctta atgagctacc cagtacaaca ctcaaccagc 120 tgcgtgacat ttttccattt gaagtcccaa ttaatactat gatagtacct aagcctagat 180 atcaattggg tactggtgtc acacttgcag tccaaggtat ggttacattg ggttgctaca 240 gcacatatgc acttgatggt gaagcatgga ttgaagttga tgaaactaga atagatccaa 300 agtgtgcata tgttgggacc atggccctag atagggtaaa gctcatggat cgcaataaag 360 aactgcagct ggaaaatgca tcaatgagtg ttgatttaca actgactcgc catgaattgg 420 agaggtgtag gccaaccatc attcgaccgc aaagatatgg taactttgca ctttttgttc 480 ttttcttttt ccttttcttt attttaggaa caaaggctga agattggcat gatcagactc 540 aggattattt ggttgaattt ctgaaagaag caaaacagga aattgtatct aatttggata 600 catattatag tctcctttta catgtagtta ggtgggaggt agtttcatgc attatagcaa 660 ttgtttcttt tttcaaatta aagaggccct gtgttgcaat aattggttta tttttagcaa 720 ccatatccag atataattat gcagcattat ctattgtacc atttctggat gtttacagca 780 ctgttttctt gtataccacc atggttgtgt attttttggt gccccatgta gctataatta 840 catcactagt ttgtgcacta ctatttacta ttgtaagtat ggtatgtgcg caccaccaat 900 tcatcatacg tgttcgtgga gattggcttg ttgtcttaat caccattgca acgtatattt 960 gtgatgttat gggtatacat actacagcaa tagctattgc tgcatcgtta gtgcgtattt 1020 atatgtgctt tcctgcagct aatgcatcag tggtggaaat caaggatagt gctggtaaag 1080 tagttcagaa aacaacattg ctacctaact ggatcggctc aatgtaccaa ggtgcccgaa 1140 atatgttgca aaaagttaga actggtgttg cgacatttgt ccgggttaat cctaattgct 1200 tgtgccatat tagaagtgaa ggttgtagtg gcacaggctt taggttgggt aatgatatag 1260 ttactgccgc acatgttgta ggcaatgctg tccaggttga ggtggtatat aataattatg 1320 ttgcccaagc taaagttaga catatccctg ataaagatat tgcatatctc atattaccag 1380 atggtctcaa aactatgcct gtcttaaaat tggcaaaaaa tccaaattat gagcaggtta 1440 caataatagc acttgagggc aattgtatgc ttgtttccac tacagaaggt gtatgccatg 1500 gtgaaactat ttcatatgcc tgtgctacca gagatggtat gagtggtgct cctgttcttg 1560 acgttaatgg aaatgttctt ggcgttcatc aaacaaatac tggatacaca ggtggtgcga 1620 cagtgattag agccactgac gctgcaccat atattgatga gaatgctgca ctcaaaaaag 1680 aaattgaaga attaaagaag atgctgcgcg aacaaacaat gaatcagaga tctgttcaag 1740 ataatgaggt tgtaggtata gttcgtgcag ctgtccaaag agaaattgga atattacgtg 1800 atgaacttaa ttcatgttat caaaaaaaga aaggaaaaaa taagaaaggc cgtggtgcac 1860 gacatcgtat gctgcgccgt gggcaaaaat tcctaacaga agaggagtac caagaactgc 1920 tggataaggg tctgactaga gaacagttgc ttgatgcaat tgaggaaatt gttagggcac 1980 gtatcggatt ccctgattgg tcagaccctg aatattcatc tgaagaggat gatgcaacag 2040 ttacatattg gtgggaacaa gtaaaagaga gtgattataa agatggagta ccccagtttg 2100 aacacattgt acccaaatat tctccaaatg aaagagtatt ttctgaacaa gagcgtaaag 2160 atgttagtga agagttgtct gctctgcaat ccatagtaga tggagttaag aaagaagatt 2220 gggaagaaac aaaaaagcag actaccgacg ctcttaatca tgcactatac gttgttgata 2280 aggctcttgc acaacatggt tatatacttt ttgaacaacg tatgcggcca aaaaacggaa 2340 aaaggggtcc tcggaggagg accccaaaca ctacctagat acatggattg ggatgcttag 2400 tccttgcgtt cgttggctgg tcccagaacg ctttcctttg tacggtggtg tacctttaga 2460 taggccagtg tatgatttta aagttgttaa tgaagatcta ttggggttgc tcccaccccc 2520 acctaataat gattttgagg tttttggtcc tactgtatgg gatgagattg catataagaa 2580 atcatttgaa aagtttgaat atgctgatta tgttgatttt gaacagatat atcctgagtg 2640 tgttgctttt gctgataaaa aatttttgga acattttaat tttttgtctg attcttcttt 2700 tgtaaatatt ttagcaactg ataaaaatgt tgattccaca cccgcatacc caaagatgcg 2760 gtggtggctt actgagagtg actatcttga ggagtgtgga tgggaatatt atgttaagga 2820 gtttgaaaac atcgcttctg gccaaaatcc agatgtttgt tggtacttgt tcctcaagaa 2880 agaaattatt aaacaacaaa aaattgatga aggagatgtc agacaaatag tatgtgctga 2940 cccaatatat tccagaattg gggcttgttt tgagcaacac caaaatgcca tgatgaagga 3000 ccacactctt ttatcatctg gacagtgtgg ttggtcccct ttttttggtg gttatgaggc 3060 aagaatgtcc aggctgcgct ccaaagggaa caaaattttt gttgagcttg attggactcg 3120 atttgatggt acaataccac caactttgtt gatgcacata aagaaattaa ggtttacctt 3180 aatgggttcc atgtcccgca agtatgaaaa tgtatacaag tggtattgta ggaacctaat 3240 caacaggttt gttgtgctgc cttcaggtga agttacagcg caacagcgtg gaaatccatc 3300 aggtcagata tcaaccacca tggataataa catgatcaac tattggttgc aggcatttga 3360 atataaattt ttgaatttac cagaagaaga gtggatgcat tttgatactt taatctatgg 3420 tgatgatagg atatctacat atcgaagcat ccctaatgaa tataccaaga taatagttga 3480 catgtataaa aatgtctttg gaatgtgggt taagccagaa aaagtcaaag tctcagagtc 3540 tttggaggga ctctcattct gtggttttac ttatacacca aatggcccag ttccaagtga 3600 gccttacaaa cttatggcct cattgttgaa acctgctaca aaattacctg atttaatagc 3660 tcttcatggg aaacttttgt gcttccagtt gttgatggca aatgatactg cacacccatt 3720 ttatgggtat attgaacagt gtttgcagta tacacaccgt gccctcagtg atgttagctt 3780 gccaaggcgc ttcactcgaa ggcagctgga gtacatttgg aggggtggac caaatgacga 3840 ctatggctaa tgccagtaaa ggtgttacag ttaacatcaa caatgcaaaa cggatgcctc 3900 gcttcaccaa taaccagcga gctagatcta ctaggccaaa ttttacacca gcacccaaat 3960 ttaggaaacg tcggtttatt cctaatagga atcgccgtcg taggcaaaat actagtacaa 4020 ctgggcctaa acctgcggtg tcgcagacaa ttacagcaac actcggcacc gttggatcaa 4080 atttgagtga tgttgttgaa actgaatgtg cagtcttttt gaatcccatt atagcaaaag 4140 actctggtgc cagtgcaact tttgggcccc ttcaatccct gggtgcacag tatgcattat 4200 ggaggctcaa gtggctagaa gtcagacttc agcctttggt gggcaactca gctgtgagtg 4260 gtactgtagc tcgtgttagt cttaacatga ctactggtcc cactctcaat tcatggtccg 4320 gtcttggagc ccgaattcac aaggatgtta gggttggttc aaatcttgtt tggcgcatta 4380 aacagcgtct agtgagtgga ccttgtgaaa cttggtggaa aaccaataca gctgaggacc 4440 catcattatc tcttggacct gcactggaag tacataccat aggtaagact atgagcactt 4500 ataaaaatga agtgttttcc agtggactat tccttcttga gataactggc cactgggaat 4560 ttgcaaatta tgctgcttct ccagcccttg ctacactcac acaacataaa gatgacagtg 4620 agaccacaaa aacacttgca attagttctg atggtgctaa tgaaccagtt gagatgctaa 4680 tacctgtgaa tgaatggaat atgaaggcac agtatggagg aaatggcaca cttggtgaag 4740 caatttacca agttgttgat actagtgtta cagttgtaac agacctcttt ccaccaccat 4800 tttcatggat tggtaaagct tcatggtggt ttatcagaaa aatgattggt aaaacaaaac 4860 aattccaggt tgttgttaat ggccaaaacc aaactcttac agcagacgtc tatcgtgttt 4920 acacttcagc ttctgctgct agagatgata aaccagcaat ttccagcaag gcacatgagg 4980 ctaagcatct gactggtgca gttgttatca cacaaatttc cacagacaac attctttcag 5040 aaaccacata tactggccca agatccattg tcacaccaga aactcctatt ggcccatcta 5100 gctatccaat gacaccaagt tctttggtgc tgatggctgg atatttcagt ggaccagaaa 5160 ttagtgataa ttttggcaag tacatgcctt tgcttttcca acagaacact tctaaggtta 5220 catttaggag tggtagtcat accataaaga ttgtaagcat ggttcttgtt gaccggctta 5280 tgtggttgga taagcacttt aaccagtaca ctaatgaacc agatggagtt tttggtgatg 5340 ttggcaatgt ttttgttgac aacgataatg ttgccaaggt tattactatg agtgggtcat 5400 cggcgccagc taatagagga gtcactttga tgctatgcaa ggccacaaaa aatatccaga 5460 ctttcaattt tgcagcaaca gtgtacatac cagcttataa agtaaaagat ggtgcaggtg 5520 gcaaagatgt tgttctgaat gtggcccagt gggaagcaaa caagactttg acatacccag 5580 ctatacctaa ggacacttac tttatggttg taacaatggg aggtgctagc tttaccatcc 5640 aaaggtatgt ggtatacaat gagggaattg gtgacggcct agaattacca gcattctggg 5700 gcaaatactt atcccagcta tatggtttta gttggagttc accaacctat gcatgtgtaa 5760 cctgggagcc tatctatgct gatgagggta taccacatag aagtgcatta aatgatgatg 5820 aagtaagcag tgatggtgat actgatgatg acactgacac agaagacgaa gacgagttct 5880 tcggcgagga tcccatggct gcattgcacg ctcttgatga aaagagacca gctagacgtg 5940 caatgtttga tgcacttgtt aaaactggtg tcagtgttga agaagcatct agatgtgtcc 6000 ttagagcatg tcctacaaaa cttcagatta agaaaaggaa tctttatgaa agcctcctgt 6060 gcgatggctt atcacctgag tcgtcgtacg aggaagcata caattgtaaa taatcaatta 6120 atttcaattg taattataat ttgctttttt tcttccagca taaatgtatg c 6171 //