ID HM439776; SV 1; linear; genomic RNA; STD; VRL; 5884 BP. XX AC HM439776; XX DT 28-OCT-2010 (Rel. 106, Created) DT 28-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Bean leafroll virus strain WA RdRp P1-P2 fusion protein-like gene, complete DE sequence; and RNA-dependent RNA polymerase 1, CP/systemic movement/aphid DE transmission fusion protein, coat protein, and movement protein genes, DE complete cds. XX KW . XX OS Bean leafroll virus OC Viruses; Riboviria; Luteoviridae; Luteovirus. XX RN [1] RP 1-5884 RX DOI; 10.1007/s00705-010-0767-0. RX PUBMED; 20697921. RA Vemulapati B., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.; RT "Molecular characterization of pea enation mosaic virus and bean leafroll RT virus from the Pacific Northwest, USA"; RL Arch. Virol. 155(10):1713-1715(2010). XX RN [2] RP 1-5884 RA Vemulapati B.M., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.; RT ; RL Submitted (02-JUN-2010) to the INSDC. RL Department of Plant Pathology, Washington State University, 345 Johnson RL Hall, Pullman, WA 99164-6430, USA XX DR MD5; bec69547e67ae0cfcf218492b151d152. DR RFAM; RF00434; BTE. XX FH Key Location/Qualifiers FH FT source 1..5884 FT /organism="Bean leafroll virus" FT /host="pea" FT /strain="WA" FT /mol_type="genomic RNA" FT /country="USA:Washington State" FT /collection_date="Jul-1994" FT /db_xref="taxon:12041" FT misc_feature 113..2817 FT /note="similar to RdRp P1-P2 fusion protein" FT CDS 113..1219 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase 1" FT /note="ORF1" FT /db_xref="GOA:E3UIM1" FT /db_xref="InterPro:IPR013674" FT /db_xref="UniProtKB/TrEMBL:E3UIM1" FT /protein_id="ADO86943.1" FT /translation="MFNFDSLITASSRVVKDFILFCYNRARSVYCALKRWLWELQGKFD FT AHNAFVDLCYDAMYGIEKFEEELAEEYTLAESEVALAECHYRYLVSNGAPLTHWPVPCP FT PPGAHRSIDDYEDSVDEAGAFEEVIPSVPKPEPIPSKDGKRDHSKSNPFRVKAFINLVK FT AKEVLQATEQKIKVVYEEEIGESPFGRWFNTLPSRMHYIKRALKKRAVNAKRAKHVTSM FT MKEVNVIPDFVACCEVVQVPTGEMIPPKKNEHGEDVGEPTPKTKMVRRVLPECAAEARS FT YIRQHIRNNNMRLIDGTDVAHATINRYALKFCEELDLDLPSTTMLVDYAMTMVPLPLKN FT DIERAKIVHSPNARRIRDELDCLTSSVF" FT CDS 3027..5195 FT /codon_start=1 FT /transl_except=(pos:3615..3617,aa:OTHER) FT /product="CP/systemic movement/aphid transmission fusion FT protein" FT /note="ORFs 3 and 5" FT /db_xref="GOA:E3UIM2" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E3UIM2" FT /protein_id="ADO86946.1" FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKP FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPKXVDGEPDPPGPGPDPPPPTPAPAPQP FT QPTPKHERFIVYTGVPESRISAQSTDDSISVYSLQNQRLRYIEDENANWTNIEARWYSN FT NNVKATPMFIFPVPQGKWSVEISTEGYQPTSSTTDPNNGKCDGLIAYSDDDKTDVWNVG FT VQKNITLSNNKADNTWKYGHPDLEINNCKFNNRQVLERDAYISFHVETTGPNASFFLVA FT PPVQKTARYNYAVSYGAWTDRMLEFGSVTVALDEHLEGGYSSHYIRRSPRPGHLESTRT FT YDLHLLPHMDDLIAANTTAVVDGYGSSISIDRQVLVAVDNHIVDSGDEMDDLPGYSSSS FT SEAPKLPAVNQTKLPPKGFLSRLRESEIEEIADKPTEITTPEVRQLADATRQPFAAGMY FT NDAFERLSINEKKRNFDSVKDDIAEIERTLPKEEYRVPKLPRIKPASEVDDDHYGESQQ FT TLAEIERRNVWASKDDAVAVESPPPGYPLGPIEARELAPFEWSRPDYEPPKPKKSLFGR FT LKSQAKEEANPSSPRNDIRRSSFSSFRR" FT CDS 3027..3617 FT /codon_start=1 FT /product="coat protein" FT /note="ORF3" FT /db_xref="GOA:E3UIM3" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E3UIM3" FT /protein_id="ADO86944.1" FT /translation="MVARGKRVVVRQLQTRARRRLPVVLATAPVRPQRKRRQRGRNNKP FT RGGNGFARRSSQVHEFVFSKDNLNGNSKGSITFGPSLSECKPLADGILKAYHEYNITNV FT ELAYITEASSTSSGSIAYELDPHLKNTTIQSKINKFSITKSEKKKFSRKAINGQAWHDT FT SEDQFRILYEGNGDAKIAGSFRVTIKVLTQNPK" FT CDS 3172..3600 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:E3UIM4" FT /protein_id="ADO86945.1" FT /translation="MDLPEDQARFTNSYSLRTTSMETPREVSRSGRLYQSASRSQMAYS FT RPTMSIISRTSSWRTSPRPLPPPQVPSLMNSILTSRTQQSSPKLTSSASPSLRRKSSLG FT RLSMDRHGTTLQRTNSGFSTKETEMPRLLDRSESLSRY" XX SQ Sequence 5884 BP; 1723 A; 1288 C; 1380 G; 1493 T; 0 other; aaagttgaca cctttacaag agcaggtttt acaagttgac tacttgtgta ttggaaacct 60 cactgcccaa cgcctccgta tcgcgattgc agtttacatt agtgtctttt aaatgtttaa 120 ttttgatagc ttgatcaccg cgtcttcgcg ggtggtcaaa gattttattc ttttttgtta 180 taatagggca aggtcagtat attgtgccct taaacgctgg ctgtgggagc tgcagggaaa 240 atttgacgca cataatgcgt ttgttgatct ctgctacgat gccatgtatg gcattgaaaa 300 attcgaggag gagctggccg aggaatacac cttggctgaa tctgaagtcg ccctagctga 360 gtgccattat aggtacttgg ttagcaatgg tgctcccctc acccactggc cggtgccttg 420 cccgcctcct ggtgctcatc gttccataga tgactatgaa gattctgtgg acgaggctgg 480 ggcatttgag gaagtgattc cctctgtgcc aaaacctgaa cctatccctt ctaaggatgg 540 gaagagggac cactctaaaa gtaatccttt tagagttaaa gctttcatta acctcgtgaa 600 agcaaaagag gttttacagg ccactgaaca aaaaattaag gtggtctacg aggaagagat 660 tggagagagc ccctttggaa ggtggtttaa tactctcccg tcccgcatgc attacatcaa 720 gcgtgcgctg aagaaacgtg ctgttaacgc aaagagagca aagcacgtaa caagcatgat 780 gaaggaagtc aacgtgattc ctgacttcgt cgcatgctgt gaagtcgtcc aggtacctac 840 tggcgaaatg atacccccaa agaaaaatga acatggggaa gatgttggcg aacccacccc 900 caaaacaaaa atggtgagga gggtactccc cgaatgtgca gctgaagcac gttcgtacat 960 aaggcagcat atccgcaaca acaacatgcg ccttattgac ggcactgacg tggcccacgc 1020 aaccattaat aggtatgcgt tgaagttctg cgaggaactt gatcttgatc tgccaagcac 1080 aactatgctg gttgattatg ctatgactat ggtccccctt cccctcaaaa acgacattga 1140 gagggcgaag atagttcact cacctaatgc tagacgcatt agagatgagt tggactgtct 1200 cacctcatcg gttttttaga ggggctctgc tccgactctg gttttgaatc ccccttttct 1260 attttgggat taccagagat cgtggtgcgt agtggggcta tccctaggaa gagtcgtagt 1320 aggattagtt ttcttagtca gttcacccta ggcctagatt accagtgtcc caatcccagt 1380 ttgcacaatg cactggtcgc agttgaacgt cgagtgttca ctgtaggaaa aggaaatgag 1440 gttgtgcgcc cttactctcc ccttcggggt cagtttgaaa agatgaacta ctttagagat 1500 gctattgtta aagatgttgg atgtcctaag acatacacac cagaacaact tgctgccacc 1560 ttcaaatcag ggaagaggtc gttgtataat acagcggttt tatccttgaa aaggaaggct 1620 gttgagaagc aagattcatt cgtaactgca tttctaaaga tggaaaaaca tatgatgagt 1680 aagaagatcg cacccagact tatctgcccc cgcaataaac ggtacaatgt tgaattaggg 1740 cggcggctaa aattttctga gaagaaattt atgcacgcaa tagataatgt cttcaaatcc 1800 cccactgttc ttagcggtta tggcagtttt aaagtgggaa ggataatagc cggcaaatgg 1860 ggcaagttta agcaccccgt agccattggt gttgatgcca gtcgctttga ccaacatgtc 1920 agcaagcagg ccctagaatg ggaacactct atttataatg ggtgttttcg agacaaacaa 1980 ctagaggaac tcttgaaatg gcaaacagaa aacaaagtta tgctgtttgt tgaagataag 2040 atattgaagt tcaaagtgtc tggacacaga atgtcaggag acatcaacac atcaatgggc 2100 aacaaattga tcatgtgcgg gatgatgcac aattacttca gagagctagg tgtagaagct 2160 gagctatgca ataatggaga tgattgggtc attatctgtg agcgaaaaaa cgagaaaaga 2220 ttctcagaca tgcacagatg gtttaaggaa tatggctttg atatgcagat agaaaaaccc 2280 gtttacaaac taacggagtt agaattttgc caatccaaac cgatcaagat caacggcttt 2340 tacagaatgg tgcgtaaacc acagtctatt tcaaaggacg cacattctct catttccatg 2400 gcatcagctg aagatgtcaa aaccttcatg agtgctactg ctcaatgcgg gttaatttta 2460 aatagtgggg tacccgtgtt ggaagcattt cataattgcc tatacaaagc ttccgggtac 2520 aaacatgttt cgcaggaact aatcgataag gtagtctcct ttggtacgca agacaaactc 2580 gggctcagga aagagcgagt tgaagaacca gtaactatgg aaaataggtt gagttactgg 2640 gagtcttttg gggttgaccc gcaaactcag gtccttgttg aacgatactt caacaatttg 2700 caggttagca tcgagccccg tggcgtaaag agattgacgc ctttactcga cgcgaaactt 2760 ttaaacatag acatccctgc tagatgctct gtgtccttac ccactattct gcagtagatt 2820 atattatatt attagtagct attattatat tagtagttct taatctcttg cctagctatt 2880 gcctgaggag agaagaatag gttccttcga ttacaagttc ttagctgcgt ttgtgttggg 2940 cttcgtatcc aacattccag ttacagtatt gggaatctat attgtttacc aacggattct 3000 aaaagaaatc agagagataa tcaacgatgg tcgctagagg aaaacgagtt gtcgttcgac 3060 aattacagac ccgcgcaagg agacgtttac cagtcgttct ggcaacggcc cctgtgcgac 3120 cacaacgaaa acgacgacaa cgaggacgaa ataacaaacc tcgaggagga aatggatttg 3180 cccgaagatc aagccaggtt cacgaattcg tattctctaa ggacaacctc aatggaaact 3240 ccaagggaag tatcacgttc gggccgtctc tatcagagtg caagccgctc gcagatggca 3300 tactcaaggc ctaccatgag tataatatca cgaacgtcga gctggcgtac atcaccgagg 3360 cctcttccac ctcctcaggt tccatcgctt atgaactcga tcctcacctc aagaacacaa 3420 caatccagtc caaaattaac aagttcagca tcaccaagtc tgagaagaaa aagttctctc 3480 ggaaggctat caatggacag gcatggcacg acacttcaga ggaccaattc aggattctct 3540 acgaaggaaa cggagatgcc aagattgctg gatcgttcag agtcactatc aaggtattga 3600 cacagaatcc taaataggta gacggagaac cggatcctcc gggccctggc ccagatccac 3660 caccaccaac acctgcacca gcaccacaac cacagccaac gccgaagcac gagagattca 3720 tcgtttatac tggcgtaccc gagtcccgta ttagtgcgca atcaacggat gattcaatct 3780 ccgtttattc tttgcaaaat caaagattgc gatatatcga ggacgaaaat gcgaactgga 3840 cgaatattga agccaggtgg tattctaaca acaatgttaa agccaccccg atgtttattt 3900 tcccagttcc tcaaggcaag tggtcggttg agatatctac tgaagggtac caaccaacgt 3960 caagcacaac agatcctaat aatgggaaat gcgacggatt gatcgcttac agtgatgacg 4020 ataagacgga tgtttggaat gtaggagtgc aaaagaacat aacccttagc aacaacaagg 4080 ccgacaacac gtggaagtat ggccacccag acttggagat taacaactgc aagttcaaca 4140 ataggcaagt cctggaacgc gatgcgtaca tttcgttcca tgttgaaaca actgggccca 4200 atgcttcctt cttcttagtt gcgcctccag ttcaaaagac tgcccggtac aattatgccg 4260 tatcttatgg agcttggact gataggatgc tagagtttgg ttctgttact gttgcacttg 4320 atgaacattt agaaggtggt tacagttctc attacattag gaggtcacca aggccaggac 4380 accttgagtc gacaaggaca tatgatttgc acttattgcc tcatatggac gatctcatag 4440 ccgccaacac tacagctgtt gtagatggct atgggagtag tattagtata gatagacaag 4500 tcttagttgc cgttgacaat catatagtag attccggtga cgagatggat gatcttccag 4560 gttattcaag ctcatcttct gaagcaccca aattacctgc cgttaatcaa acgaaattgc 4620 caccaaaagg ttttctttcc aggttgagag aatccgagat cgaagagata gcggacaaac 4680 caaccgagat aacaacacct gaggttagac aattagctga tgctacgcgc cagccttttg 4740 ccgcaggaat gtacaatgac gcttttgagc gactgtccat aaatgaaaag aaacgcaatt 4800 ttgattccgt caaggatgat attgctgaaa tagaaaggac attgccaaaa gaagagtaca 4860 gggtgccgaa actgccacgc atcaagcccg cctccgaagt ggatgacgat cactatggtg 4920 aaagtcagca aactttggca gagattgaaa gacgtaatgt ctgggccagt aaagatgacg 4980 ctgttgcagt tgaatctcca ccaccgggct atcctctcgg gccaattgag gctagggagt 5040 tagcgccgtt tgagtggagt agaccagatt atgagcctcc gaaacctaag aagtcattgt 5100 ttggcagact caagtcacaa gccaaggaag aagctaaccc ttcttctcct cgcaatgaca 5160 ttagaagatc atcttttagt agctttcgta gatagacatc tgtagactca ctaagagcca 5220 acgcagcgcc actagtgcat cgaatcctgg gaaacaggca cggagaataa aatccggtaa 5280 gctcgggaag ccgtcaactt ccgccgtatt gatgaaaaca acttggccga cgctgttaat 5340 aaccttagca tcttgagttc tactaaaaat tagatagttt tccgcctctt ccaaaagttg 5400 ccaccttttg gaatgtgaga tagatgggga gaggttgcct tgaataagca actgttgatg 5460 tctgctggta ttgagtccaa tgatcaaaac tcacgttgct tctgacgtat acactgcccc 5520 tgattcaaca gggtaaacaa atttgcgcca cctcgatgag atgagagtga agcgcggagt 5580 aaagagttgc tcctactttt gtaggttgca actctgggga gttttgtagt aggccaaaag 5640 ccaaactagt tcttcctcgt acggaaacaa caacaggtat gattgttcgg acatcattgg 5700 cactagttgc caatgtacag atggtctaac agataccccc cctctgctcg ggtttaaatg 5760 tcagcgctgg ctcttcagcg acaacaaggg ggcgttcctg cttgcctccc aatggatcct 5820 gcaggaacaa gtcttcgaat ctttatgaga tttgtggacc tctttgttgt taaggtggcg 5880 aaag 5884 //