ID HM439608; SV 2; linear; genomic RNA; STD; VRL; 6028 BP. XX AC HM439608; XX DT 08-SEP-2010 (Rel. 106, Created) DT 04-NOV-2019 (Rel. 142, Last updated, Version 4) XX DE Pepper vein yellows virus 2 isolate Is, complete genome. XX KW . XX OS Pepper vein yellows virus 2 OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RC Publication Status: Online-Only RP 1-6028 RX PUBMED; 23936244. RA Dombrovsky A., Glanz E., Lachman O., Sela N., Doron-Faigenboim A., RA Antignus Y.; RT "The Complete Genomic Sequence of Pepper Yellow Leaf Curl Virus (PYLCV) and RT Its Implications for Our Understanding of Evolution Dynamics in the Genus RT Polerovirus"; RL PLoS One 8(7):E70722-E70722(2013). XX RN [2] RP 1-6028 RA Dombrovsky A., Glanz E., Lachman O., Pearlsman M., Antignus Y.; RT "Characterization of Pepper yellow leaf curl virus: a tentative new RT Polerovirus species causing a yellowing disease of pepper"; RL Unpublished. XX RN [3] RP 1-6028 RA Dombrovsky A., Glanz E., Lachman O., Pearlsman M., Antignus Y.; RT ; RL Submitted (01-JUN-2010) to the INSDC. RL Virology, The Volcani Center, Makabim 1, Bet-Dagan 50250, Israel XX RN [4] RC Nucleotide and amino acid sequences updated by submitter RP 1-6028 RA Dombrovsky A., Glanz E., Lachman O., Pearlsman M., Antignus Y.; RT ; RL Submitted (07-JUN-2012) to the INSDC. RL Virology, The Volcani Center, Makabim 1, Bet-Dagan 50250, Israel XX DR MD5; 013e24377b15d1c3c3972529debaf80d. DR EuropePMC; PMC3081434; 21400195. DR EuropePMC; PMC3728342; 23936244. DR EuropePMC; PMC4422679; 25946037. DR EuropePMC; PMC4755677; 26889117. XX CC On Jun 7, 2012 this sequence version replaced HM439608.1. XX FH Key Location/Qualifiers FH FT source 1..6028 FT /organism="Pepper vein yellows virus 2" FT /host="Capsicum annuum" FT /isolate="Is" FT /mol_type="genomic RNA" FT /country="Israel" FT /collection_date="Oct-2002" FT /note="originally identified as Pepper yellow leaf curl FT virus" FT /db_xref="taxon:2560636" FT 5'UTR 1..50 FT CDS 51..800 FT /codon_start=1 FT /product="P0" FT /note="ORF0" FT /db_xref="GOA:I3Y1T2" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:I3Y1T2" FT /protein_id="AFL70182.1" FT /translation="MNFELINGSHLKVSLTRKLGYRERILNLAVFLSQYLVTIQENETT FT NHFLCSICALLPFLLSSQCPFLSGNTPHRNGKREQKRVSKLALYCGVNITPCWNGKASS FT SAWLQTDSNLGAPRAHLKRRAGSAMASYIQRFQTPLFQGAEEFSRFLRVWTHHCEGVVE FT GSFPKLSVDRGLIVELWHLGHCLLDLLSGDDIYHTRRMSRIALCLHNIYGGGIAMDVYR FT LAHLPRSAHIKGGEDYLHGSQIQKELQ" FT CDS 175..2139 FT /codon_start=1 FT /product="P1" FT /note="ORF1" FT /db_xref="GOA:I3Y1T3" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:I3Y1T3" FT /protein_id="AFL70183.1" FT /translation="MRLQTIFFALFVLSSLSFSAANVPFYQGIHRTGTASGNRSESLNS FT LFTVELTSLLAGTERPRPPLGSKPIVTSEPHEPTLRDALDLLWQVISRDSRRLSSKAQK FT SFQDSCAYGLTTAKAWLKGAFQSFLWTVVSLWSFGIWVIVSWTFYLVTTFTIPVVCLAL FT LYAFTTFMVVALRWMFTGWPTCLALLILKAGKIIFTVPKFRRNYSEEKQVKGFISLKIP FT QSPPRGSVLLVQHEDNSHAGYASCVRLYDGTLALMTCHHVGTGVPGGKVTSTKTPNKIP FT LRLFTPLISSEKGDFMLMSGPPNWESLLGCKGAHFVSASQLAKSKMRFFFIEKNEWMAD FT HGEIVGPRDHWFATTLCNSEPGHSGTPIFNGKTIVGVHAGGENEQNFNVMATIPPVPGL FT TTPRYVFETTAPQGRVFTDEDLSEMMKSVTSYPQLEKFKSHTGKNWADYEDFEAEVKSK FT PAPAPVAQEAKPKSGAEGTPPVSKSRQWYPRVPESGNEKGRAACQTNSNPAPVQEKGKE FT KKVEAEKAPASSTPSKLPESADGGEKYLEKLLEKLVERIDLSTIEKKVVEVVAQKAMKK FT PQGSQRRRRPRRTSNDTSKEATNGRYQPPYKRSQGSNNAEASPSTTTQSKSKVVNGAPS FT SSKNTLSWERKSPASAGQQ" FT CDS 2484..3431 FT /codon_start=1 FT /product="P2" FT /note="ORF2" FT /db_xref="GOA:I3Y1T4" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:I3Y1T4" FT /protein_id="AFL70184.1" FT /translation="MLEVESSDMSAEELVQAGLCDPIRTFVKREPHKQSKLDEGRYRLI FT MSVSLVDQLVARVLFQNQNKREIALWRANPSKPGFGLSTDEQVLEFVQALAAQVEVPPE FT EVITSWEKYLVPTDCSGFDWSVAEWMLHDDMVVRNKLTLDLNPTTEKLRSVWLKCICNS FT VLCLSDGTLLAQRVPGVQKSGSYNTSSSNSRIRVMAAYHCGADWAMAMGDDALESVNTN FT LEVYKDLGFKVEVSGQLEFCSHIFRAPDLALPVNERKMLYKLIFGYNPGSGNLEVISNY FT IAACVSVLNELRHDPDSVALLHQWLVSPVLPQNN" FT CDS 3631..5730 FT /codon_start=1 FT /transl_except=(pos:4240..4242,aa:OTHER) FT /product="readthrough protein" FT /note="P5; ORF5" FT /db_xref="GOA:I3Y1T5" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:I3Y1T5" FT /protein_id="AFL70185.1" FT /translation="MNTEGVRRNNNGNGGSRGTRRRRRPRQVRPVVVVAPPGRTRRGNR FT RRRSGGRNRNRVGGRSSNSETFIFNKDSIKDSSSGTVTFGPSLSESIALSGGVLKAYHE FT YKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQING FT VEWHDTSEDQFRLLYKGNGTKGVAAGFFQIRFTVQLHNPKXVEGSTPPPPQPGPEPPPP FT TPQPCAKSRFWGYEGNPQNKILTAENDRNIDSRPLNFVSMYKWEDEKWDKVNLQAGYSR FT NDRRCMETYLTIPADKGKFHVYLEADGEFVVKHIGGDLDGSWLGNIAYDVSQRGWTVGN FT YKGCKIKNYQTNTTFVAGHPDSKMNGKSFDSARAVEVDWFASFELECDDEEGSWMIYPP FT PIQKDVSYNYTVSYGNYTEKYCEWGAISVSIDEDNEGYAPRRIPRKGETTRSDPEKDYS FT ENKPQKENWNTKPLDAGKTLREGKPDTNPSSDIRVKLNYSLSLEDSEDELIDEPNFVPG FT KRMNLEAIPLHNPADKDYILRDRGIATTLVEPAYLQDVTPQNKIEEDPWKHVRDFKSSH FT VSKGPASVASGSTLRGNLRGRSMPPPLPPPAEKVGDSLLTSSTQWDPPGSPLTPFKDKE FT LAKPPSDARSSISSRLTGGLLKSRVDKDLASLTTAQRQQYEITRQTLGKTAAQKFLQSC FT KEGDS" FT CDS 3631..4242 FT /codon_start=1 FT /product="coat protein" FT /note="CP; ORF3" FT /db_xref="GOA:E1A0W4" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E1A0W4" FT /protein_id="ADM83578.2" FT /translation="MNTEGVRRNNNGNGGSRGTRRRRRPRQVRPVVVVAPPGRTRRGNR FT RRRSGGRNRNRVGGRSSNSETFIFNKDSIKDSSSGTVTFGPSLSESIALSGGVLKAYHE FT YKITMVNIRFVSESSSTAEGSIAYELDPHCKLTSLQSTLRKFPVTKGGQATFRASQING FT VEWHDTSEDQFRLLYKGNGTKGVAAGFFQIRFTVQLHNPK" FT CDS 3662..4123 FT /codon_start=1 FT /product="putative movement protein" FT /note="MP; ORF4" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:E1A0W5" FT /protein_id="ADM83579.2" FT /translation="MEMVDHAAPAVVDAHDRFALSLWSHPLGAHGGEIEDDEVEAGTEI FT ELEEGRATAKLSSSTRTQSRIVPQELSPSGRLYQRASRFQVEFSKPTMSIKSQWLIYAS FT SANPLPQRKAPSLTSWTPTASLLVSNPPCASSPSPKAGKRPFGLRRLMG" FT 3'UTR 5731..6028 XX SQ Sequence 6028 BP; 1675 A; 1487 C; 1482 G; 1384 T; 0 other; acaaaatata cgaagagaga gagcccttgc tagtgatttc ttcaagtttt atgaactttg 60 aactgatcaa cggaagccat cttaaagtct ccctcactcg caagcttggt tacagagaga 120 gaatcctaaa tttagcagta ttcttaagtc aatacctcgt aaccatacaa gaaaatgaga 180 ctacaaacca ttttctttgc tctatttgtg ctctcctccc tttccttctc agcagccaat 240 gtcccttttt atcagggaat acaccgcacc ggaacggcaa gcgggaacag aagcgagtct 300 ctaaactcgc tctttactgt ggagttaaca tcactccttg ctggaacgga aaggcctcgt 360 cctccgcttg gctccaaacc gatagtaacc tcggagcccc acgagcccac cttaagagac 420 gcgctggatc tgctatggca agttatatcc agagattcca gacgcctctc ttccaaggcg 480 cagaagagtt ttcaagattc ctgcgcgtat ggactcacca ctgcgaaggc gtggttgaag 540 ggagctttcc aaagctttct gtggaccgtg gtctcattgt ggagctttgg catctgggtc 600 attgtctcct ggacctttta tctggtgacg acatttacca tacccgtcgt atgtctcgca 660 ttgctttatg ccttcacaac atttatggtg gtggcattgc gatggatgtt taccggctgg 720 cccacttgcc tcgctctgct catattaaag gcggggaaga ttatcttcac ggttcccaaa 780 ttcagaagga actacagtga agaaaaacaa gttaagggat ttatttcttt gaaaatcccc 840 cagagccccc cccgtggaag cgtgctactc gtgcaacatg aagacaactc tcatgccggg 900 tatgccagct gtgtacggtt atatgacggc actctagccc tcatgacctg tcaccacgtg 960 ggcacagggg ttcccggagg aaaggtgacc tccacgaaaa cacctaataa aataccactc 1020 cgcctattca cacctctgat ctcttcagaa aaaggagatt tcatgttaat gagcgggcct 1080 ccaaattggg agagcctgtt aggctgtaaa ggagcccact tcgtttccgc gtcacaactt 1140 gctaaatcta agatgcggtt cttcttcata gagaaaaacg agtggatggc tgatcatggt 1200 gagattgtag gtccacgtga tcactggttt gccacaacgc tctgcaactc agagcctgga 1260 cattctggca ccccgatctt taatggcaaa actatagtgg gtgtgcacgc tggaggtgag 1320 aacgaacaaa actttaatgt gatggcaacg atccctcctg tccccggttt gacgacccca 1380 cggtatgtgt ttgaaacaac tgctccccag ggtcgagtct tcactgatga ggacctaagt 1440 gagatgatga aaagcgtcac ctcatatccc cagttagaaa aattcaaaag ccatactggg 1500 aagaactggg cagattatga agacttcgaa gccgaagtca agagcaaacc cgccccggca 1560 cccgtagctc aggaagctaa acccaagagc ggtgctgagg gaactccgcc ggtgagcaaa 1620 tcccggcagt ggtatccacg tgttcccgag tcgggaaacg agaaaggcag agctgcctgc 1680 caaaccaaca gcaaccctgc cccagtacaa gagaagggca aggagaagaa ggtagaggcc 1740 gaaaaggccc ccgcatcgtc caccccctca aagcttccag aatcagccga cggcggcgaa 1800 aaatatttag agaagctttt ggagaagcta gtggagagga tcgatctctc cactatagaa 1860 aagaaagtag tggaagtagt ggcccagaaa gccatgaaga aaccccaggg aagccagcgg 1920 cgcagacgac cgcggagaac ttccaacgat acttcgaagg aagctacaaa tgggaggtac 1980 cagcctcctt acaagagatc ccagggttcc aacaatgcgg aagcctcccc cagtactacc 2040 acccaaagca aatcaaaggt tgtgaatggg gcacccagct catccaagaa caccctgagc 2100 tgggagagaa agtctccggc ttcggctggc caacagtagg cccccaagcc gaggtaacct 2160 ctctcacttt acaagcagag aggtggctgc aacgcgcgca gttagctaaa atcccgtcat 2220 ctgaggaccg ggagcgcgtc ataaataaaa ctgtggaggc ttcctctaat gttaaaactt 2280 ttggccccac agctactaga gggaacaagc tcgagtggcg gcaatttctg gaagatttta 2340 agtcagccgt cctctctctg gagcttgatg caggtatagg cgtgccgtac atcgcctatg 2400 gaaggcccac tcataaaggt tgggtggaag acccgaaact cctgccagtg ctcgcccgac 2460 tcactttcaa ccgtttacag aagatgttgg aagtcgagtc ctctgatatg agcgctgaag 2520 agcttgtgca agctggtctc tgtgatccga taaggacatt tgtgaagaga gaaccacaca 2580 agcaatccaa actcgatgaa ggccgctacc gcctcatcat gagcgtttca ctagtagatc 2640 aattggtagc ccgggttctg tttcaaaacc agaacaagcg agaaatcgct ctttggaggg 2700 caaatccctc aaaacccggt tttggcttgt ctacggatga gcaagtgcta gagtttgtac 2760 aagctctggc cgcgcaagtg gaagtcccac cagaggaagt gattacctcg tgggagaagt 2820 accttgtgcc gactgattgc tctggatttg actggagcgt tgcggaatgg atgctacatg 2880 acgatatggt cgtccgcaac aaactcacac tggacttaaa tccgacaacg gaaaagctac 2940 gatctgtgtg gctgaagtgc atctgcaata gtgtcctgtg tttgagcgat ggcacactcc 3000 ttgcccaaag ggtccccggc gttcagaagt ccggtagcta caacacaagt agctcaaatt 3060 caaggatccg agttatggcc gcctaccact gtggggctga ctgggccatg gcgatgggag 3120 acgatgctct cgaatcagtc aacactaacc tagaggtgta taaagatcta ggttttaaag 3180 tcgaggtttc aggacaactg gaattctgct ctcacatctt tagagcgcct gaccttgccc 3240 ttcccgtgaa tgagcgtaaa atgctgtaca agctcatctt cggatataat ccgggaagtg 3300 ggaatctgga ggttatctcc aactatatcg ccgcttgtgt atcagttcta aacgaattgc 3360 ggcatgaccc agattccgtt gctctccttc accagtggtt agtctctcca gtactgccac 3420 aaaataattg aagagagagc atataactag ccaagcatac atcagttgca agcgttggaa 3480 gttcaagtct gattaccaac agcctgacac aatagattac aaatttttag caggatttgc 3540 gtctggattt ctttccgcaa tcccactttc tgtagcaggc atttacttag tctaccttaa 3600 aatcttagcc cacgttccgc gcgatcgtta atgaatacgg aaggggttag gagaaataat 3660 aatggaaatg gtggatcacg cggcacccgc cgtcgtagac gcccacgaca ggttcgccct 3720 gtcgttgtgg tcgcaccccc tgggcgcaca cggcggggaa atcgaagacg acgaagtgga 3780 ggcaggaacc gaaatagagt tggaggaagg tcgagcaaca gcgaaacttt catcttcaac 3840 aaggactcaa tcaaggatag ttcctcagga actgtcacct tcgggccgtc tctatcagag 3900 agcatcgcgc tttcaggtgg agttctcaaa gcctaccatg agtataaaat cacaatggtt 3960 aatatacgct tcgtcagcga atcctcttcc acagcggaag gctccatcgc ttacgagctg 4020 gacccccact gcaagcttac tagtctccaa tccaccctgc gcaagttccc cgtcaccaaa 4080 ggcgggcaag cgacctttcg ggcttcgcag attaatgggg tagagtggca cgatacatct 4140 gaagatcaat tcaggctgct ctataaaggt aacggaacaa aaggcgttgc cgctgggttt 4200 ttccaaatcc ggtttactgt gcaactgcac aaccccaaat aggtagaagg tagtaccccc 4260 cccccccccc aacctggtcc tgagccacca ccaccaaccc ctcaaccctg tgcgaaaagc 4320 cggttttggg gttatgaagg caacccgcag aacaagattc tcacggcaga gaatgataga 4380 aatatcgact ctcgcccttt gaattttgtc tcgatgtata agtgggaaga tgagaagtgg 4440 gacaaagtca acctccaagc tggttattct cggaatgatc ggcgttgtat ggaaacatac 4500 ttaaccatcc cggcagacaa aggaaagttc cacgtctatc ttgaagccga tggagagttt 4560 gtcgtcaaac atattggcgg cgatttggat gggagttggc ttggcaatat tgcctatgat 4620 gtctcgcaac gtggctggac ggtggggaat tacaaaggtt gcaagataaa gaattatcaa 4680 acgaatacta cctttgtggc ggggcacccg gattcgaaaa tgaatggcaa atcctttgat 4740 agcgcccggg ctgtagaagt agattggttc gcttctttcg aacttgagtg tgatgacgag 4800 gaaggaagct ggatgattta tcccccccca attcagaaag atgtctccta taattacacc 4860 gtttcatacg gaaattatac ggagaagtat tgtgagtggg gagccatttc tgtttctata 4920 gatgaagata atgaggggta tgcaccaaga agaataccgc gtaaggggga aacgacgcgg 4980 tcggatccgg agaaggatta ctccgagaac aaaccccaga aggaaaactg gaatactaaa 5040 cccctggacg caggtaaaac gctgagggaa ggaaaacccg atacaaaccc tagcagtgac 5100 atcagggtca agcttaacta ttcattgagt cttgaagatt ctgaagatga gcttattgat 5160 gagccaaatt ttgtccctgg taagcggatg aacttagagg caatacctct tcacaacccc 5220 gctgataaag attacattct tcgtgacaga ggcatagcaa cgacattggt tgaaccagcc 5280 tacttgcaag atgtaactcc tcaaaataag atcgaggagg atccctggaa acacgttcgg 5340 gatttcaaat caagtcacgt tagtaaaggc ccagcttctg tagcttcagg gtctactttg 5400 agaggtaact taagagggcg ctccatgccc ccacctctcc cccctccagc tgagaaagtt 5460 ggggattctt tgcttacaag tagcactcaa tgggatcccc caggttcgcc cctcactcct 5520 ttcaaggata aggaattggc taaaccgcct tctgatgctc gtagctcgat ttctagtcgc 5580 ttgactggag gtcttttaaa gagccgagtg gataaagatt tggcgagcct gactacagct 5640 cagagacagc agtatgaaat aaccagacaa actcttggta aaactgctgc tcaaaagttc 5700 ttgcaaagtt gcaaggaggg tgactcatag tctaagctct acgactataa aacaacgagc 5760 atactgaact ccaaacctgt tagagtataa cccaggtagt ctaagctcta tgactttaaa 5820 ataacgagca tactgaactc caagcctgtt agagtataac ccaggtcgtc gttagctgta 5880 gacgtaaaac cagcggtccg gtgttgatgg ctgtcaaaca ctgagtaact cacagcaacg 5940 aaacccgcgg atggatccac gcgggagtag gcatcataat tcttagggta ggggggtgta 6000 tagatacccc cccaatcact agtgaatt 6028 //