Dbfetch
ID HM368372; SV 1; circular; genomic DNA; STD; VRL; 2759 BP. XX AC HM368372; XX DT 04-JUL-2010 (Rel. 105, Created) DT 28-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Watermelon chlorotic stunt virus isolate LB1 segment DNA-B, complete DE sequence. XX KW . XX OS Watermelon chlorotic stunt virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2759 RX DOI; .1094/PDIS-04-12-0366-PDN. RX PUBMED; 30727474. RA Samsatly J., Sobh H., Jawjari M., Najjar C., Haidar A., Abou-Jawdah Y.; RT "First Report of Watermelon chlorotic stunt virus in Cucurbits in Lebanon"; RL Plant Dis. 96(11):1703-1703(2012). XX RN [2] RP 1-2759 RA Samsatly J., Abou-Jawdah Y., Sobh H.; RT ; RL Submitted (30-MAY-2010) to the INSDC. RL Plant Protection, AUB, American University of Beirut-Bliss street - Hamra, RL Beirut 7546, Lebanon XX DR MD5; 625bccad417f87a032b4504ca21af6ee. XX FH Key Location/Qualifiers FH FT source 1..2759 FT /organism="Watermelon chlorotic stunt virus" FT /segment="DNA-B" FT /host="Cucumis melo (melon)" FT /isolate="LB1" FT /mol_type="genomic DNA" FT /country="Lebanon" FT /collection_date="Nov-2009" FT /db_xref="taxon:35341" FT gene 522..1286 FT /gene="BV1" FT CDS 522..1286 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttle protein" FT /db_xref="GOA:D9J2U7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:D9J2U7" FT /protein_id="ADJ38377.1" FT /translation="MPVIRRYDGTPHGTRGRKRKQFFRPFKSGLFRRRQASRRLFAEKP FT REKLSRRCLEDVHSGPSYALMNQCDVTSYVTYPILGLEGNGGRRSDFIKLMNVRVSGTI FT NVTPLPAEPMSDRSPMNGIFVLLLIVDRKPFVPEGVNVLPSFKELFGEYECVYGIPRVK FT ENQRHRYRILGMWKQYVSGDDSAVQKDFTLRRNISGPRYNVWAAFKDIDQMSTGGNYKN FT VSKNAILACNVWVSTVRSKCEVYSQFVLDYVG" FT gene complement(1326..2321) FT /gene="BC1" FT CDS complement(1326..2321) FT /codon_start=1 FT /gene="BC1" FT /product="BC1 protein" FT /db_xref="GOA:D9J2U8" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:D9J2U8" FT /protein_id="ADJ38378.1" FT /translation="MIIYCVQSYLHLRIELRRKVPVENGMEGAYTVTNKYIHTKRTEYT FT LTTDATPITLQFPSSIEQTRVRLLGRCMKIDHIIIEYRNQVPFNATGSVIIEIRDNRIS FT DEEAAQAAFTFPIACNVDLHYFSSSFFSVAEQCPWEIVYRVEDSNVLNGVRFASFKAKL FT RLSSARHSTDIMFKAPTIKILTKGYKEDCIDFWSVERGETRRRLLNPTPSAQSNRALSK FT RPITILPGETWATKSHVGLPSASDSQSRDTYRSQSMRLDHTRSFTGTSYESDDTPYAGL FT HRLQTATLDPGDSVSQTRSETFSRQDLESILENTINKCLIKNKNDNNQML" XX SQ Sequence 2759 BP; 698 A; 605 C; 683 G; 773 T; 0 other; accgggtggc cgccggatcc catttgtgcg gaccccacac agtctccaaa tggcattttg 60 gtaatttccg tttactaaga tggttttttt gtaatttacg tttaattaaa aagagggacc 120 accgcactat cactctcttg gccaatcaaa ttgcaccctg attcttaagg ggataaattt 180 gggcctcggc ccaatttatc gatgtgacgg gacgtacgtc tgctttatga gattggcccg 240 caacgactgc tttgtctgac aggaccacat gtgacactga cagttctgtt ctttaacctt 300 aagaaaattc aaggaatttt cccgcctatt tcgcctcgag gagcaaacag tcgttggatg 360 cccgccacct gtcacttgtt cgttcgttcg atttccgttt ttcgattaat ttgtggtctc 420 tgtacatgtt ggcctgttat ttatgacagt gtggcgccca tactgaggtg tccaactggg 480 actgtattcg tattgagagg atatacgtat cctcccaagc tatgccagtg attcgtcgct 540 atgatgggac acctcatggt acgcgtggac gaaagcggaa gcagttcttt cgcccgttca 600 agtctggtct gtttagacgc cgtcaggcgt cgaggcgtct gtttgccgaa aagccacgcg 660 agaaactctc acgccgttgc ctggaggatg ttcacagtgg gccgtcttat gcactgatga 720 atcagtgcga cgtgacatct tatgtgacgt atcctattct cggtctagag ggcaacgggg 780 gacgtagaag tgactttatt aagctgatga acgtgcgcgt ttctggcacg atcaacgtga 840 cccctttgcc tgcagagccc atgtctgatc gttctcctat gaacggtata tttgttctac 900 ttttgattgt ggacaggaaa ccattcgtac ccgaaggtgt gaacgtattg cccagtttca 960 aggaactgtt cggcgagtat gaatgcgtct acggcattcc acgagtgaag gaaaatcagc 1020 gtcataggta caggattctg ggcatgtgga aacaatacgt cagcggtgac gatagtgcgg 1080 tgcagaagga ctttactttg cgaaggaaca tcagtggccc gagatacaac gtatgggcag 1140 cattcaaaga cattgatcaa atgtccacag gaggaaatta caagaacgtg agcaagaatg 1200 ccattcttgc ctgtaatgta tgggtctcta cagttcgttc gaaatgtgaa gtgtattcgc 1260 aatttgtact ggattatgtg ggctgaaata aaattcaatt ttatttatgc gttcaacaat 1320 cgttattaca gcatttgatt attatcgttt ttgttcttaa ttaggcactt attaatcgta 1380 ttttctaaaa tagattctag gtcctgcctc gagaaagtct ctgatcttgt ctgggagact 1440 gagtctcccg ggtctagcgt ggctgtttgt agtctgtgca gccctgcata tggcgtgtcg 1500 tcggactcat atgaggtccc cgtgaaactg cgtgtgtggt ccagtctcat cgactgggat 1560 ctgtacgtgt cgcgactttg agagtccgac gcagaaggca acccaacatg cgactttgtg 1620 gcccaagttt ctccaggtaa tatcgtaatt ggcctctttg acagggcccg attcgattgg 1680 gccgacgggg ttgggttgag cagccttcgt cgtgtttcgc ctcgttcaac ggaccagaag 1740 tctatgcagt cctccttgta accctttgtc aggatcttga tcgtcggagc cttgaacatg 1800 atgtccgttg aatgtcgtgc agaactcagt cgcaacttgg ctttgaaaga agcaaaccgg 1860 acaccgttca agacgttcga gtcctcgacc ctgtacacga tctcccaggg acactgctcg 1920 gcgactgaaa aaaacgacga agagaagtag tgaagatcta cgttgcaagc tatcgggaag 1980 gtgaaggcag cctgtgctgc ttcctcgtcg gagatacggt tgtcccgtat ctcaataatc 2040 acagatcccg ttgcgttaaa cgggacctgg tttctgtact caatgataat gtggtcgatc 2100 ttcatgcatc ttcccaacag acgcactctt gtctgctcga tcgaactggg aaactgaagg 2160 gttataggag tggcgtctgt agtgagcgta tattccgtcc tcttggtatg tatgtacttg 2220 ttagtgacgg tatacgcgcc ctccattccg ttctccacag gaacctttcg acgaagttca 2280 attctgaggt gcagatagct ctgcacacaa taaattatca ttaacacagg caaagcaaca 2340 agagaacgga gattattcta ttatataaaa taaggccccg caggggaaat actcaaaaca 2400 caccgagaaa ggacgtaatg ggcatactat ggcctaaagg atttttaagc gaaattaatt 2460 gagctgataa tcgtattggg tgttttggag tatttcataa actctaattc gttcgggcgt 2520 attaggaact ggtgttcgtc gtggagagaa ctcgaactga attcccaaat agaaaaaccc 2580 taatgaccga acaaatagat tggggagata aaataaggag aaaaaagctc tttcatgtac 2640 ggaactggag acacctccca gcccttctat ccctgtgaat tggagactgg agacaatata 2700 tagaagtagt atgatatatt actaggattt tgacacgtat gcggccatcc tataatatt 2759 //