Dbfetch
ID HM359015; SV 1; circular; genomic DNA; STD; VRL; 2607 BP. XX AC HM359015; XX DT 16-AUG-2010 (Rel. 105, Created) DT 28-SEP-2010 (Rel. 106, Last updated, Version 2) XX DE Sida golden mosaic Florida virus-Malvastrum strain DE Cuba:Havana:Malvastrum:123:2009 segment DNA-A, complete sequence. XX KW . XX OS Sida golden mosaic Florida virus-Malvastrum OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2607 RX DOI; 10.1007/s00705-010-0761-6. RX PUBMED; 20677027. RA Fiallo-Olive E., Martinez-Zubiaur Y., Moriones E., Navas-Castillo J.; RT "Complete nucleotide sequence of Sida golden mosaic Florida virus and RT phylogenetic relationships with other begomoviruses infecting malvaceous RT weeds in the Caribbean"; RL Arch. Virol. 155(9):1535-1537(2010). XX RN [2] RP 1-2607 RA Fiallo-Olive E., Martinez-Zubiaur Y., Moriones E., Navas-Castillo J.; RT ; RL Submitted (26-MAY-2010) to the INSDC. RL Departamento de Proteccion de Plantas, Centro Nacional de Sanidad RL Agropecuaria, Carretera de Tapaste km 3 1/2, San Jose de Las Lajas, La RL Habana 32 700, Cuba XX DR MD5; 20210d785b1b627ea896c714a19bafdd. XX CC GenBank Accession Numbers HM359015-HM359016 represent the complete CC genome of Sida golden mosaic Florida virus-Malvastrum strain CC Cuba:Havana:Malvastrum:123:2009. XX FH Key Location/Qualifiers FH FT source 1..2607 FT /organism="Sida golden mosaic Florida virus-Malvastrum" FT /segment="DNA-A" FT /host="Malvastrum coromandelianum" FT /strain="Cuba:Havana:Malvastrum:123:2009" FT /isolate="123" FT /mol_type="genomic DNA" FT /country="Cuba:Havana" FT /collected_by="E. Fiallo-Olive" FT /collection_date="2009" FT /clone="123H11" FT /db_xref="taxon:871521" FT gene 182..937 FT /gene="AV1" FT CDS 182..937 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:D9ZFY2" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:D9ZFY2" FT /protein_id="ADL32222.1" FT /translation="MSKRDGSWRSIAGMSKVKRTMNFSPRGGGGPKMTRAAEWVNRPMY FT RKPRIYRTLRTPDIPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT gene complement(934..1332) FT /gene="AC3" FT CDS complement(934..1332) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancement protein" FT /db_xref="GOA:E0A3B6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E0A3B6" FT /protein_id="ADL32223.1" FT /translation="MDSRTGELITARQAENGVYIWEIENPLYFKIYSAEDQLYTRTRVY FT HIQIRFNHNLRKALGLHKAYLNFQVWTTSMTVSGLTYLARFRHLVNMYLYQLGVIGINN FT VIRAVRFATAKPYVNHVLENHIIKYKFY" FT gene complement(1079..1468) FT /gene="AC2" FT CDS complement(1079..1468) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /db_xref="GOA:D9ZFY4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:D9ZFY4" FT /protein_id="ADL32224.1" FT /translation="MPYSSPSQPPSIKKAHRQAKRRAIRRRRIDLDCGCSIYFHIGCTG FT HGFTHRGTHHCTSGREWRVYLGDRKSPLFQDIQRRGPAIHQNQSVPHTDKIQPQPEESV FT GSPQSLPELPSLDDIDDSFWVNLFS" FT gene complement(1380..2465) FT /gene="AC1" FT CDS complement(1380..2465) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:D9ZFY5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:D9ZFY5" FT /protein_id="ADL32225.1" FT /translation="MPSVKRFKINAKNYFITYPDCSLSKEEALSQLQNLSTPVNKKFIK FT ICREFHQNGKPHLHVLIQFEGKYACTNYRFFDLVSPSMSVPFHPNIQGAKSSSDVKSYI FT NKDGDTLEWGEFQIDGRSARGGCQSVNDTYAKALNASSAEEALQIIKEEQPQHFFLQHH FT NLVANAHRIFSKAPEPWAPPFPLSSFTAVPDEMQEWADENFGRGAAARPERPMSIIVEG FT DSRTGKTMWARSLGPHNYLSGHLDFNPRVFSNDVEYNVIDDVAPQYLKLKHWKELLGAQ FT KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLAKEENTGLKNWTNKNAIFITLT FT APLYQEGTQASQEAGNQETQD" FT gene complement(2051..2308) FT /gene="AC4" FT CDS complement(2051..2308) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:D9ZFY6" FT /protein_id="ADL32226.1" FT /translation="MGSLISTCLYNSRGNMHARITDSSTWSHHPCQSHSIQTYRELNPA FT PMSSPTSTRTETHWNGVNSRSTGEVLEEAANRLTIHMPRR" XX SQ Sequence 2607 BP; 649 A; 571 C; 622 G; 765 T; 0 other; accggatggc cgcgctttgg tgcccgctcc tatgcgcttt aatttgaatt aaagcttgcc 60 gcttttcctt tgtccaatga tattgcgcct ggcaagccta aataattcaa acaacttggg 120 ccctaagttg ttttgggcct attaaaggaa aagcttgttg ggccacacat aacagtccat 180 tatgtctaag cgcgatggtt cctggcgctc tatcgcggga atgtcaaaag tgaaacgcac 240 tatgaatttc tctcctcgtg gaggtggtgg cccaaaaatg acaagggccg ctgaatgggt 300 gaacaggcct atgtacagga agcctaggat ttatcggact cttaggacgc ctgatattcc 360 gagaggctgt gaaggccctt gcaaggtgca gtcttacgaa caacggcatg atatctcaca 420 tgtcgggaag gtcatgtgta tttcagatgt gacacgtggt aacggcatta ctcatcgtgt 480 tggtaagcga ttctgtgtta agtctgtgta tattttaggt aaggtttgga tggatgagaa 540 catcaagctc aagaaccaca cgaacagtgt tatgttctgg ttggtcaggg atcgtcgacc 600 gtatggcact ccgatggatt tcggtcaggt gttcaacatg ttcgataacg agcctagcac 660 tgcgactgtg aagaacgatc tccgtgatcg ttatcaagtc atgcacaagt tctatgccaa 720 ggtcacaggt ggtcaatatg ccagcaacga gcaagctctc gtcaagaggt tctggaaggt 780 caacaatcat gtggtctaca atcatcagga agctggcaag tacgagaatc atacggagaa 840 tgcgttacta ttgtatatgg catgtactca tgcctctaac cctgtatatg cgacattgaa 900 aattcggatc tatttttatg attcgataac aaattaataa aatttatatt ttattatatg 960 attctcaagc acatgattta catatggttt ggctgttgca aaacgaacag ctctaattac 1020 attgtttatc ccaattacac ctaattggta caagtacatg ttaaccagat gcctaaatct 1080 agctaaataa gttaacccag aaactgtcat cgatgtcgtc cagacttgga agttcaggta 1140 ggctttgtgg agacccaacg ctttcctcag gttgtggttg aatcttatct gtatgtggta 1200 cactctggtt ctggtgtata gctggtcctc tgcgctgtat atcttgaaat agaggggatt 1260 ttctatctcc cagatataca cgccattctc tgcctgacgt gcagtgatga gttcccctgt 1320 gcgtgaatcc atggcccgtg cagccgatgt ggaagtaaat ggagcacccg caatctagat 1380 caatcctgcg tctcctgatt gcccgcctct tggcttgcct gtgtgccttc ttgatagagg 1440 ggggctgtga gggtgatgaa tatggcattc ttgttggtcc aattctttag acctgtgttt 1500 tcctctttgg ctaggaaatc tttatagcta gcaccctcac caggattgca aagcacgatt 1560 gctgggatcc cgcctttaat ttgaactggc ttgccgtact tgcaatttga ttgccagtcc 1620 ttctgggccc ccagaagttc tttccagtgc tttaacttta gatattgcgg tgcgacgtca 1680 tcaatgacgt tatactccac gtcatttgaa aatactcgag ggttgaagtc cagatgtcca 1740 ctaagataat tatgtgggcc taacgaacga gcccacatcg tcttccctgt cctcgagtca 1800 ccttctacta tgatactcat aggtctctcc ggccgcgcag cggcacctct tccaaaattc 1860 tcatcggccc attcttgcat ctcgtcggga acggctgtga aagaagagag gggaaacgga 1920 ggagcccatg gctcaggagc cttactgaaa atccgatgag cattggcaac cagattgtga 1980 tgctgaagaa agaaatgttg aggctgttcc tccttgatta tttgcagagc ctcttctgca 2040 gaagaggcat tcaacgcctt ggcatatgta tcgttaaccg attggcagcc tcctctagca 2100 cttctcccgt cgatctggaa ttcaccccat tccagtgtgt ctccgtcctt gttgatgtag 2160 gacttgacat cggagctgga tttagctccc tgtatgtttg gatggaatgg gactgacatg 2220 gatggtgaga ccaggtcgaa gaatctgtaa ttcgtgcatg catatttccc ctcgaattgt 2280 ataagcacgt ggagatgagg cttcccattc tgatggaact ctctgcagat cttgatgaac 2340 ttcttgttca caggagtgga caggttttgt aattgagaaa gtgcttcttc tttgctcagg 2400 gagcagtcgg gatatgtgat gaaatagttt ttggcattta ttttaaaacg tttaactgat 2460 ggcatttttg taaatataag agtgttcccc aattggagct ctctcaactt gctcatacaa 2520 ttggggaatg gggaacaata tatactagaa ccctcaatag aactttggat ctcgttcaca 2580 cacgtggcgg ccatccgcta taatatt 2607 //