ID HM357461; SV 3; linear; genomic DNA; STD; VRL; 2615 BP. XX AC HM357461; XX DT 27-JUL-2010 (Rel. 105, Created) DT 31-JAN-2011 (Rel. 107, Last updated, Version 3) XX DE Chino del tomate Amazonas virus isolate AM10 segment DNA-A, complete DE sequence. XX KW . XX OS Chino del tomate Amazonas virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2615 RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.; RT "Genomic organization of Chino del tomate Amazonas virus, a bipartite RT begomovirus endemic to the Amazon region of Brazil"; RL Unpublished. XX RN [2] RP 1-2615 RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.; RT ; RL Submitted (25-MAY-2010) to the INSDC. RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09 RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil XX RN [3] RC Nucleotide and amino acid sequences updated by submitter RP 1-2615 RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.; RT ; RL Submitted (26-JAN-2011) to the INSDC. RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09 RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil XX RN [4] RC Sequence update by submitter RP 1-2615 RA Fonseca M.E.N., Boiteux L.S., Fernandes N.A.N., Costa A.F.; RT ; RL Submitted (28-JAN-2011) to the INSDC. RL Laboratorio de Analise Genomica, Embrapa-Hortalicas, Km 09 RL Brasilia-Goiania, Brasilia, DF 70359-970, Brazil XX DR MD5; bb21bb0b4677e47e8a69dd7a8b948c4d. XX CC On Jan 28, 2011 this sequence version replaced gi:320099836. XX FH Key Location/Qualifiers FH FT source 1..2615 FT /organism="Chino del tomate Amazonas virus" FT /segment="DNA-A" FT /host="Lycopersicon esculentum (tomato)" FT /isolate="AM10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="Nov-2007" FT /db_xref="taxon:858516" FT gene 169..969 FT /gene="AV1" FT CDS 169..969 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:E2GI67" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:E2GI67" FT /protein_id="ADK55015.3" FT /translation="MSKCRSAISHGARWREPLRSAAMSTPRLVQVSAQNSTRPLNGSTG FT PCIGSPGSIARSDLPMCLEGVKGRVRSSPYEPGATNISHVGKVMCISDVTRGNGITHRV FT GKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPS FT TATIKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHT FT ENALLLYMACTHASNPVYATLKIRIYFYDSGFKLIKFEFYLMIL" FT gene complement(955..1332) FT /gene="AC2" FT CDS complement(955..1332) FT /codon_start=1 FT /gene="AC2" FT /product="replication enhancer protein" FT /note="Ren" FT /db_xref="GOA:E2GI68" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E2GI68" FT /protein_id="ADK55017.2" FT /translation="MDSRTEELITAHQAENGVYIWEITNPLYFKIYNVETPMYTNSRVY FT HIQIRFNHNLRKELNLHKAILNFQVWTTSVTASGTTYLNKFRHLVMLYLDQLGVISINN FT VIRAVQFATDKRYVTSVLENH" FT gene complement(1079..1468) FT /gene="AC3" FT CDS complement(1079..1468) FT /codon_start=1 FT /gene="AC3" FT /product="transactivator protein" FT /note="Trap" FT /db_xref="GOA:E2GI69" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E2GI69" FT /protein_id="ADK55016.2" FT /translation="MRSSSPSAPPSIKRAHRQAKKRAIRRRRIDLECGCSIYLHIGCTG FT HGFTHRGTHHCTSGREWRVYLGDNKSPIFQDIQRRDTHVHELQGVSHTNTVQSQPQEGV FT ESTQSHPEFPSLDDISDSFWDDIFK" FT gene complement(1432..2523) FT /gene="AC1" FT CDS complement(1432..2523) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E9KZK8" FT /protein_id="ADW10637.1" FT /translation="MSQFSESSNWGDKPILPKCHHPSVSKSLPKTISLLILIALSPKTM FT HFPNSSTFKPQLTNYSFVLQESFTRMGSLISMCLSNSKGNTNAPTTDSSTWYPQPDQHI FT SIRTFRELKKQAQTSKPIWRKTETSLIMEFSRSMDDQLEEVANLPTTLMPRLSMQAMQP FT RPSIYSERNNPETFLQIIIISKQMQKGFLLRLRNHGFLRFPSPHSLTFQKRCKSGQIII FT SGEVPLRGRRDRLVSSSRVNSRTGKTMWARALGPHTYLSGHLDFNGTVYSNQVEYTVIA FT AVAPHYLKLKHWKELIGSQKDWQSNCKYGKPVQIQGGIPSIVLCNPGSGFQLSRFPQQR FT GKRITQELDPQECALHHPQLPPQ" XX SQ Sequence 2615 BP; 652 A; 554 C; 645 G; 764 T; 0 other; accggatggc cgcgcttttt ttgtcctggc ctttaatttc gaattaaagg tggtccttcg 60 cactttcgtc caattatatc gcgcctgatg tgtctagata ttttaaacaa cttgggagcc 120 aagttgtgat gtcgatataa aggaaaggac cactgggcca catgcttcat gtcgaaatgc 180 cgaagcgcga tctcccatgg cgctcgatgg cgggaacctc taaggtcagc cgcaatgtca 240 actcctcgcc tcgtgcaggt atcggcccaa aactcaacaa ggcctctgaa tgggtcaaca 300 ggcccatgta taggaagccc aggatctatc gcacgctcag atctcccgat gtgcctagag 360 ggtgtgaagg gccgtgtaag gtccagtcct tatgaaccag gcgccacgaa catatcacat 420 gtcggcaagg taatgtgtat ttctgacgtg acacgtggta atggcattac ccaccgtgtg 480 ggtaagcgtt tttgtgttaa gtctgtgtac attctaggta agatatggat ggatgagaac 540 atcaagctga agaaccacac gaacagtgtc atgttctggt tggttagaga ccgtagaccg 600 tatggaacgc ccatggattt tggacaagtg ttcaacatgt tcgacaacga acctagcact 660 gccacgatca agaacgatct ccgtgatcgt taccaggtca tgcacaggtt ctatgggaag 720 gtgacaggtg gacagtatgc gagcaacgag caggctattg tcaggcgatt ctggaaggtc 780 aacaatcatg tggtctacaa tcatcaggag gctggaaagt atgagaatca cacagagaat 840 gctttgttac tgtacatggc atgcactcat gcctcaaacc ctgtatatgc tactctgaag 900 atccggatct atttttatga ttcgggtttc aaattaataa aatttgaatt ttatttaatg 960 attctctagt acagaagtta cataacgttt gtctgttgcg aattgaacag ctctaattac 1020 attattaatg gaaataacac ctaactggtc taagtacaac ataactaaat gcctaaattt 1080 atttaaatat gtcgtcccag aagctgtcac tgatgtcgtc cagacttgga aattcaggat 1140 ggctttgtgt agattcaact ccttcctgag gttgtgattg aaccgtattt gtatgtgata 1200 caccctggag ttcgtgtaca tgggtgtctc tacgttgtat atcttgaaat ataggggatt 1260 tgttatctcc cagatataca cgccattctc tgcctgatgt gcagtgatga gttcctctgt 1320 gcgtgaatcc atgcccagtg cagcctatgt ggaggtagat ggagcaaccg cactctagat 1380 caatgcgcct cctcctgatg gccctcttct tggcttgcct gtgtgctctc tttattgagg 1440 ggggagctga gggtgatgaa gagcgcattc ttgagggtcc agttcctgag tgatgcgttt 1500 tcctctttgt tgaggaaatc ttgatagctg gaaccctgac cctggattgc aaagcacgat 1560 tgatgggatt cctccttgaa tttgaactgg cttgccgtac ttgcaatttg actgccagtc 1620 tttttgtgac ccaatcaatt ctttccagtg ctttagcttt agatagtgcg gtgcgacggc 1680 agcaatgacg gtatactcca cttgatttga atagaccgta ccattgaaat ccagatgtcc 1740 actcagatag gtatgtgggc ctaacgcacg agcccacatt gtctttcctg ttcttgaatt 1800 caccctcgat gatgatacta atcggtctct ccggccgcgc agcggcacct ctcccgaaat 1860 aattatctgc ccactcttgc atctcttctg gaacgttagt gaatgaggag aggggaaacg 1920 gaggaatcca tggttccgga gccttagcaa aaatcctttc tgcatttgct ttgagattat 1980 gataatttgc aaaaaagtct ctgggttgtt cctctctgaa tatattgagg gcctgggttg 2040 catcgcctgc attgagagcc ttggcataag agtcgttggc agattggcaa cctcctctag 2100 ctgatcgtcc atcgatctgg aaaactccat gatcaatgaa gtctccgtct ttctccatat 2160 aggctttgac gtctgagctt gcttctttag ctccctgaat gttcggatgg aaatgtgctg 2220 atctggttgg ggataccaag tcgaagaatc tgttgttggt gcattggtat ttcccttcga 2280 attggataag cacatggaga tgaggctccc cattctcgtg aagctctctt gcaacacgaa 2340 tgaataattt gttagttggg gtttgaaggt tgatgaattg ggaaagtgca tcgtctttgg 2400 tgagagagca atgaggataa gtaaggaaat agtttttgga agagattttg aaacgcttgg 2460 gtggtggcat tttggtaata taggcttgtc cccccagttg gagctctctg aaaactgtga 2520 catgaattgg ggtaatgggg tacattatat agtagaagtc tcaatagaac ttcgtatctg 2580 aatccgcaca cgtggcggcc atccgttata atatt 2615 //