ID   HM346951; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346951;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Namulonge2-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
DR   MD5; 7ca0eea9bbfd62c6b19b34ce4913baf1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Namulonge2-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda:Namulonge"
FT                   /collection_date="Dec-2004"
FT                   /db_xref="taxon:137758"
FT   CDS             <1..1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E9KZD9"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:E9KZD9"
FT                   /protein_id="ADW23663.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYAHNELSDPI
FT                   VFKGVVNGEIVSPRGNNGFGWDPIFKPDECNCTFAEMPSNIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQRLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQV
FT                   DPKKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIKVAKAYGVNIQEFYRTVLPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKITRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTRTRLF
FT                   ALAAPGDDNNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376..1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 544 A; 256 C; 414 G; 464 T; 0 other;
     gggccataca tcaagtggtt tttgaaggag ttgggtcttg aaggtgttgt taagatgctg        60
     tcagcatttg gagataaatc agcgtacgca ctatgtacat tcgcatatgc gcacaatgag       120
     ttgtctgatc caattgtgtt taaaggagtt gtgaatggtg aaattgtgtc accacgaggt       180
     aacaatggtt tcggctggga tcctatattt aagcctgacg aatgtaattg tacgttcgca       240
     gaaatgccaa gcaacattaa gaatgatttt tcccacagga gaagagcttt agagaaagtt       300
     aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaggcaag ggtagctcta       360
     acgattgatg ttcaggcttt gaatcaggag gaaatagaag cagagatcac tgctttaaag       420
     aagctgtgga aagataatgg accaacaaga actcgtagtc catttgaggc tagaaggttg       480
     agagccccac aagttgagcg tgtgaatgag ttacttcaga gactaaaaga tgaaggattg       540
     caaacaaaga agaggccgtg tggtgagcca gatgatggag aagtggtaga tgatgatagc       600
     gatgatggta acaatcagag atctggaaag gaagttgttg atgaaagcca gaataatcag       660
     caagttgatc caaagaagcc gaaattcaaa attagaggag atggaagtgc tattagacgg       720
     gatgacattg ataaaattcc aactaatgct cttgagatta aaaagacatt caagcctcca       780
     aaggtgtcac agtcagctta catttggatt ccacgttctc aaagggataa cctaacccct       840
     gatgtaattc aaaatttcct ggcatacata cctccatctc atgctataga taatcaactt       900
     gcctcaggaa ttgaagttga gaattgggca attaaggttg ctaaagcata tggagttaat       960
     atacaggaat tttatcgcac ggttttgcca gcttggatag tgaattgtat agtgaatggc      1020
     actagcgatg aaaggaaaaa tgagaagtca tggcgagcag tcgagttgaa ttctcaaggg      1080
     gaagatgttg atgattttga gtatccaatg gagccaatgt acaaatttgc attgccaact      1140
     atgaggaaga ttacgagaaa cttttctagc caagctatcc tcatgtatca gaatagtgtt      1200
     gctgcaggta aggcgttcgt gatcaaagct gctaggaatg ctggatacac aagtatcgaa      1260
     aataaatggc taggtataga ttttcttgcc gaagcccaat tgtcccagag tcaacttgat      1320
     atcaagcatc agattctggc agcgaatgtt ggtagaacaa ggacaaggct atttgcacta      1380
     gcagctcctg gggatgataa caatgtagat agagaaaggc acacgacaca cgatgtcagt      1440
     gccaacaggc acagctacag tggtgccgca attgaataaa taaaatatta gtgtttttaa      1500
     ttgagtttga atgagattat aacttagttg aaaagctaag ttatatttca gattcgaatt      1560
     caagtactta aatattgtat tttgttttca agtttggtgg agttttgggt agccaattat      1620
     gttttggttg gataagccag aatgtatttt ggagatcttt ctccatatcc ttctgtta        1678
//