ID   HM346948; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346948;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Mbandar12-1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
DR   MD5; d78233b3c06d3d86ba92245541c3e8d6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Mbandar12-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Mbandar"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1..1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E9KZD6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:E9KZD6"
FT                   /protein_id="ADW23660.1"
FT                   /translation="GPYIKWFLKELGLDGVVKMLSAFGDKSAYALCTFAYVHNELSDPI
FT                   VFKGVVNGEIVQPRGNNGFGWDPIFKPDGCGSTFAEMPSSIKNEFSHRRRALEEVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTKTRSPLEAKRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVIDDDSDDGNNQRSGKEVVDESQNNQQV
FT                   DPRKSKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VVQNFLAYVPPSHAIDNQLASGIEVENWAIEVAKAYGVHIQEFYRTVLPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDGNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376..1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 546 A; 255 C; 414 G; 463 T; 0 other;
     gggccataca tcaaatggtt tttaaaagaa ttgggtcttg atggtgttgt caaaatgctg        60
     tcagcatttg gagataaatc agcgtacgca ctatgtacat tcgcatatgt gcacaatgag       120
     ttatctgatc caattgtgtt caaaggggtt gtgaatggtg aaattgtgca accacgaggt       180
     aataatggtt ttggctggga tcctatcttt aagcctgatg gatgtggtag tacgtttgca       240
     gaaatgccaa gcagcattaa gaatgaattt tctcacagaa gaagagcttt agaggaagtc       300
     aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaagcaag ggtggctcta       360
     acgattgatg ttcaggcctt aaatcaggag gaaatagaag cagagatcac tgctttaaag       420
     aagctgtgga aagataatgg accaacaaaa acgcgtagtc cacttgaggc taagagattg       480
     agagccccgc aagttgagcg tgtaaatgag ttacttcaga aactgaaaga tgaaggattg       540
     caaacaaaga agaggccatg tggagaacca gatgatgggg aagtgataga tgatgacagt       600
     gatgatggta acaatcagag atctggaaag gaagttgttg acgaaagcca gaataatcag       660
     caagttgatc caagaaagtc gaagttcaaa attaggggag atggaagtgc tattagacgg       720
     gatgacattg ataaaattcc aactaatgct cttgagatca agaagacgtt caagcctcca       780
     aaggtttcac aatcagctta catttggatt ccacgctctc aaagggataa tctaacccct       840
     gatgttgttc agaatttcct ggcatatgta cctccatctc atgctataga taaccaactt       900
     gcttcgggaa ttgaagttga aaattgggca attgaggttg ctaaagcata tggagttcat       960
     atacaggaat tttatcgcac agttttgcca gcttggatag tgaactgtat agtgaacggc      1020
     actagtgatg aaaggaaaaa cgagaagtca tggcgagcag tcgagttgaa ttctcagggg      1080
     gaggacgttg atgattttga gtatccaatg gagccaatgt acaaatttgc attgccaact      1140
     atgaggaagg ttatgagaaa cttttctagc caagctatcc tcatgtatca gaatagtgtc      1200
     gctgcaggaa aggcgtttgt gataaaagct gctagaaacg ctggatatac aagtattgaa      1260
     aacaaatggc taggtattga ctttctcgcc gaagctcaat tgtctcaaag tcaacttgat      1320
     atcaagcatc agattctggc agcaaatgtt gggaggacaa agacaaggct gtttgcatta      1380
     gcagctcctg gagatgatgg caatgtagat agagaaaggc acacgacaca tgatgttagt      1440
     gcaaacaggc acagttatag tggtgccgca attgaataaa taaaatatta gtgtttctta      1500
     ctaggtttga ataagattat agcttagttg gaaagctaag ctatatttca aatttgaatt      1560
     taagtactta aatatcgtat tttattttca agtttggtgg agttttggat agccaattac      1620
     attttggttg ggtaagccaa aatgtatttt ggagatcttt ctccatatcc ttctgtta        1678
//