ID   HM346946; SV 1; linear; genomic RNA; STD; VRL; 1676 BP.
XX
AC   HM346946;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Kikonde11-5 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1676
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1676
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
DR   MD5; 1b175bdb61a73a3ed1e4e7b11974c2ea.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1676
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Kikonde11-5"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Kikonde"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1..1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E9KZD4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:E9KZD4"
FT                   /protein_id="ADW23658.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFEDKSAYALCTFAYVHNESSDPI
FT                   VFKGVVNGEIVPPRGKNGFGWDPIFKPDESSCTFAEMSSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKRAKVALTIDVQALNQEEIEAEITALKKLWKDNGPTRTRSPFEARRLRAP
FT                   QVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQV
FT                   DPRKPKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSHAIDNQLASGIEVENWAIEVAKAYGINIQEFYRTVLPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDNNVDKERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376..1476
FT                   /product="coat protein"
XX
SQ   Sequence 1676 BP; 552 A; 249 C; 413 G; 462 T; 0 other;
     gggccataca ttaagtggtt tttaaaagaa ttgggtctcg aaggtgttgt taaaatgctc        60
     tcagcatttg aagataaatc agcgtacgct ttatgcacat ttgcatatgt gcataatgag       120
     tcgtctgatc cgattgtgtt taaaggagtt gtgaatggtg aaatcgtgcc accacgaggg       180
     aaaaatggtt ttggctggga tcctatattt aagcctgatg aaagcagttg tacgtttgca       240
     gaaatgtcaa gtagcatcaa gaatgatttt tcccacagaa gaagagcttt agagaaagtc       300
     aagttgtttc ttgataactt ggtggtgaaa caagaggaga agagggcaaa ggtggctcta       360
     acgattgacg tccaggcctt aaatcaggag gaaatagaag cagagatcac tgctttaaag       420
     aagctttgga aagataatgg accaacaagg acacgtagtc catttgaggc taggagattg       480
     agagccccac aagttgagcg cgtaaatgag ctacttcaga aactaaaaga tgaaggattg       540
     caaacaaaga agaggccatg tggagaacca gatgatgggg aagtggtaga tgatgatagt       600
     gatgatggaa ataatcagag atctggaaag gaagttgttg atgagagtca gaataatcag       660
     caagttgatc caagaaagcc gaaattcaag attagaggag atggaagtgc tattaggcgg       720
     gatgacattg ataaaattcc aactaatgct cttgagatca agaaaacgtt caagcctcca       780
     aaggtgtcac agtcagctta catttggatt ccgcgctctc agagggataa tctaacccct       840
     gatgtaattc agaatttcct ggcatatata cctccatctc atgctataga caatcaactt       900
     gcttcaggaa ttgaagttga gaactgggca attgaagttg ctaaagcata tggaattaat       960
     atacaggaat tttatcgcac agttttgcca gcttggatag tgaactgcat agtgaatgga      1020
     actagtgatg agaggaagaa tgagaagtca tggcgagcag ttgagctgaa ttctcagggg      1080
     gaagatgttg atgattttga gtatccaatg gagccaatgt ataaatttgc attgccaacc      1140
     atgaggaagg ttatgagaaa cttctctagt caagctatcc tcatgtatca gaatagtgta      1200
     gctgcaggta aagcgtttgt gataaaagct gctagaaatg ctggatacac aagtatcgaa      1260
     aataaatggc taggtataga ttttcttgcc gaagctcaat tgtcccagag tcaacttgat      1320
     atcaagcatc agattttggc agcaaatgtt ggtagaacaa agacaagact gtttgcatta      1380
     gcagctcctg gggacgataa caatgtggat aaagaaaggc acacgacaca cgatgtcagt      1440
     gcaaataggc acagttacag tggtgccgca attgagtgaa taaagtatta atgttttaat      1500
     taagtttgga tgagattata gcttagtcgg aaagctaagt tatatttcaa attcgaattt      1560
     aaatacttaa atattatatt ttgttttcga gtttggtgga gttttgggaa ccaattatat      1620
     tttggttggg taagccaaaa tgtattttgg agatctttct ccatatcctt ctgtta          1676
//