ID   HM346942; SV 1; linear; genomic RNA; STD; VRL; 1678 BP.
XX
AC   HM346942;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Nyumbasita5-4 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1678
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1678
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
DR   MD5; 7d9ae832c73de4ad1d61514195096fc9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1678
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Nyumbasita5-4"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Nyumbasita"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1..1479
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E9KZD0"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:E9KZD0"
FT                   /protein_id="ADW23654.1"
FT                   /translation="GPYIKWFLKELGLDGVVKMLSAFGDKSAYALCTFAYVHNELSDPI
FT                   VFKGVVNGEIVPPRGSNGFGWDPIFKPDGCDCTFAEMPSSIKNDFSHRRRALEKVKLFL
FT                   DNLVVKQEEKKARVALTIDVQALNQEEIEAEITALKKLWKDNGPTETRSPFEARRLRAP
FT                   QVERVNELLKKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVVDESQNNQQV
FT                   DPRKSKFKIRGDGSAIRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTPD
FT                   VIQNFLAYIPPSYAIDNQLASGIEVENWAIGVAKAYGVNIQEFYRTILPAWIVNCIVNG
FT                   TSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQNS
FT                   VAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRLF
FT                   ALAAPGDDGNVDKERHTTRDVSANRHSYSGAAIE"
FT   mat_peptide     376..1476
FT                   /product="coat protein"
XX
SQ   Sequence 1678 BP; 546 A; 252 C; 413 G; 467 T; 0 other;
     gggccataca tcaaatggtt tttaaaagaa ttgggtcttg atggtgttgt caaaatgctg        60
     tcagcatttg gagataaatc agcgtacgca ctatgtacat tcgcatatgt gcacaatgag       120
     ttatctgatc caattgtgtt caaaggagtt gtgaatggtg aaattgtgcc accacgaggt       180
     agtaatggtt ttggctggga tcctatcttt aagcctgatg gatgtgattg tacgttcgca       240
     gaaatgccaa gcagcattaa gaatgatttt tctcacagaa gaagagcttt agagaaagtc       300
     aaattgtttc ttgataactt ggtggtgaag caagaggaga agaaagcaag ggtggctcta       360
     acgattgatg ttcaggcctt aaatcaggag gaaatagaag cagaaattac tgctttgaag       420
     aagctgtgga aagataatgg gccaacagaa acgcgtagtc catttgaggc taggagattg       480
     agagccccac aagttgagcg tgtaaatgag ttgcttaaga aattgaaaga tgaaggactg       540
     caaacaaaga agaggccatg tggagaacca gatgacgggg aagtggtaga tgatgacagc       600
     gatgatggta acaatcagag atctggaaag gaagttgttg atgagagcca gaataatcag       660
     caagttgatc caagaaagtc gaaattcaaa attaggggag atggaagtgc tattagacgg       720
     gatgacattg acaaaattcc aactaatgct cttgagatca agaagacgtt taagcctcca       780
     aaggtatcac agtcagctta catttggatt ccacgctctc aaagggataa tctaactcct       840
     gatgttattc agaatttcct ggcatacata cctccatctt atgctataga taaccaactt       900
     gcttcaggaa ttgaagttga aaattgggca attggggttg ctaaagcata tggagttaat       960
     atacaggaat tttatcgcac aattttgcca gcttggatag tgaactgtat agtgaacggc      1020
     actagcgatg aaaggaaaaa cgagaagtca tggcgagcag ttgagttgaa ttctcagggg      1080
     gaggatgttg atgattttga gtatccaatg gagccaatgt acaaatttgc attgccaact      1140
     atgaggaagg ttatgagaaa cttttctagc caagctatcc tcatgtatca gaatagtgtc      1200
     gctgcaggaa aggcgtttgt gataaaagct gctagaaatg ctggttacac aagtattgaa      1260
     aacaaatggc taggtataga ttttctcgcc gaagctcaat tgtctcaaag tcaacttgat      1320
     atcaagcatc aaattctggc agcaaatgtt ggtaggacaa agacaaggct gtttgcatta      1380
     gcagctcctg gggatgatgg taatgtagat aaagaaaggc acacgacacg cgatgtcagt      1440
     gcaaacaggc acagttatag tggtgccgca attgaataaa taaaatgtta gtgtttctaa      1500
     ttaggtttaa gtgagattat agcttagttg gaaagctaag ctatatttca aactcgaatt      1560
     taattactta aatatcgtat tttattttca agtttggtgg agttttagat agccaattat      1620
     attttggttg ggtaagccaa aatgtatttt ggagatcttt ctccatatcc ttctgtta        1678
//