ID   HM346938; SV 1; linear; genomic RNA; STD; VRL; 1681 BP.
XX
AC   HM346938;
XX
DT   03-FEB-2011 (Rel. 107, Created)
DT   23-MAR-2011 (Rel. 108, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate Kilifi18-2 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1681
RX   DOI; 10.1099/vir.0.026922-0.
RX   PUBMED; 21169213.
RA   Mbanzibwa D.R., Tian Y.P., Tugume A.K., Patil B.L., Yadav J.S.,
RA   Bagewadi B., Abarshi M.M., Alicai T., Changadeya W., Mkumbira J.,
RA   Muli M.B., Mukasa S.B., Tairo F., Baguma Y., Kyamanywa S., Kullaya A.,
RA   Maruthi M.N., Fauquet C.M., Valkonen J.P.;
RT   "Evolution of cassava brown streak disease-associated viruses";
RL   J. Gen. Virol. 92(Pt 4):974-987(2011).
XX
RN   [2]
RP   1-1681
RA   Abarshi M.M., Maruthi M.N.;
RT   ;
RL   Submitted (20-MAY-2010) to the INSDC.
RL   Natural Resources Institute, University of Greenwich, Blake Building,
RL   Central Avenue, Chatham Maritime, Kent 44, England
XX
DR   MD5; 7b03a632b83e2d42273d11be1379d28b.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1681
FT                   /organism="Cassava brown streak virus"
FT                   /host="Manihot esculenta"
FT                   /isolate="Kilifi18-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Kenya:Kilifi"
FT                   /collection_date="Oct-2008"
FT                   /db_xref="taxon:137758"
FT   CDS             <1..1482
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="GOA:E9KZC6"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:E9KZC6"
FT                   /protein_id="ADW23650.1"
FT                   /translation="GPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYVHNESSDPI
FT                   VFKGVMNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSNSMKNDFSHRRRALEKVKSFL
FT                   DSLVVKQEEKKKARVALTIDVQALNQEEIEAEITALKKLWRDNGPTRTRGPFEARRLRA
FT                   PQVERVNELLQKLKDEGLQTKKRPCGEPDDGEVVDDDSDDGNNQRSGKEVIDESQNNQQ
FT                   VDPRKPKFKIRGDGSAVRRDDIDKIPTNALEIKKTFKPPKVSQSAYIWIPRSQRDNLTP
FT                   DVIQNFLAYVPSSHAIDNQLASGIEVENWAIEVAKAYGVNIQEFYRTILPAWTVNCIVN
FT                   GTSDERKNEKSWRAVELNSQGEDVDDFEYPMEPMYKFALPTMRKVMRNFSSQAILMYQN
FT                   SVAAGKAFVIKAARNAGYTSIENKWLGIDFLAEAQLSQSQLDIKHQILAANVGRTKTRL
FT                   FALAAPGDDNNVDRERHTTHDVSANRHSYSGAAIE"
FT   mat_peptide     376..1479
FT                   /product="coat protein"
XX
SQ   Sequence 1681 BP; 545 A; 250 C; 417 G; 469 T; 0 other;
     gggccataca tcaagtggtt tttaaaagaa ttgggtctcg aaggtgttgt taaaatgctt        60
     tcagcatttg gagataagtc agcgtacgca ctatgtacat ttgcatatgt gcacaatgag       120
     tcatccgatc caattgtgtt taaaggagtt atgaatggtg agattgtgcc accgcgaggt       180
     aacaatggtt ttggctggga tcctatattc aaacctgatg aatgtagttg tacgtttgca       240
     gaaatgtcaa acagcatgaa gaatgatttt tcccatagaa gaagagcttt ggagaaagtc       300
     aaatcgtttc ttgatagctt ggtggtgaag caagaggaga agaagaaggc aagggtggct       360
     ctaacgattg atgttcaggc cttaaatcag gaggaaatag aagcagagat cactgcttta       420
     aagaagctgt ggagagataa tgggccaaca agaacgcgtg gtccatttga ggctaggaga       480
     ttgagagccc cacaagttga gcgtgtaaat gagttacttc agaaactgaa agatgaagga       540
     ttgcaaacaa agaagaggcc atgtggagaa ccagatgatg gggaagtggt agatgatgat       600
     agtgatgatg gtaataatca gagatctgga aaggaagtta tcgatgaaag ccagaataat       660
     cagcaagttg atccaagaaa gccaaaattc aagattagag gagatggaag tgctgttaga       720
     cgggatgaca ttgataaaat tccaactaat gctcttgaga tcaaaaagac atttaagcct       780
     ccaaaggttt cacagtcagc ttacatttgg attccacgct ctcagaggga taatctaact       840
     cctgatgtaa ttcagaattt cctggcatat gtaccttcat ctcatgcaat agataatcaa       900
     cttgcttcag gaattgaagt tgagaactgg gcgattgagg ttgctaaagc atatggagtt       960
     aatatacagg aattttatcg cacaattttg ccagcttgga ctgtgaactg tatagtgaac      1020
     ggcactagcg atgaaaggaa gaatgagaag tcatggcgag cagttgagtt gaattctcaa      1080
     ggggaagatg ttgatgattt tgagtatcca atggagccaa tgtacaaatt tgcattgcca      1140
     actatgagga aggttatgag aaacttctct agccaagcta tcctcatgta tcagaatagt      1200
     gttgctgcag gtaaggcgtt tgtgataaaa gctgctagaa atgctggata cacaagcatt      1260
     gaaaataaat ggctaggtat agattttctt gccgaggctc aattgtctca gagtcaactt      1320
     gatatcaagc atcagattct ggcagcgaat gttggtagaa caaagacaag actgtttgca      1380
     ttagcagctc ccggggatga taacaatgta gatagagaaa ggcacacgac acacgatgtc      1440
     agtgcaaaca ggcacagcta cagtggtgcc gcaattgaat aaatgaaata ttagtttttc      1500
     taattgagtt tgaatgagat tatagcttag ttgggaagct aagttatatt ttaaatttga      1560
     attcaagtac ttaaatattg tatttcgttt tcaagtttgg tggagttttg gatagccaat      1620
     tatattttgg ttagattagc cagaatgtat tttggagatc tttctccata tccttctgtt      1680
     a                                                                      1681
//