Dbfetch
ID HM246648; SV 1; linear; genomic RNA; STD; VRL; 3232 BP. XX AC HM246648; XX DT 10-OCT-2010 (Rel. 106, Created) DT 10-OCT-2010 (Rel. 106, Last updated, Version 1) XX DE Cryphonectria hypovirus 1 isolate CHV1-IT254 polyprotein gene, complete DE cds; and p48 gene, partial cds. XX KW . XX OS Cryphonectria hypovirus 1 OC Viruses; Riboviria; Hypoviridae; Hypovirus. XX RN [1] RP 1-3232 RA Ye Y., Deng Q.C., Wang K.R.; RT "Phylogenetic analysis of Cryphonectria hypovirus 1 within the 5'-proximal RT region"; RL Unpublished. XX RN [2] RP 1-3232 RA Ye Y., Deng Q.C., Wang K.R.; RT ; RL Submitted (20-MAY-2010) to the INSDC. RL Plant Protection College, Nanjing Agricultural University, Weigang No.1, RL Nanjing, Jiangsu 210095, China XX DR MD5; 33731fe03e4fcbf3f5dcda0fab4b21e8. XX FH Key Location/Qualifiers FH FT source 1..3232 FT /organism="Cryphonectria hypovirus 1" FT /host="Cryphonectria parasitica" FT /isolate="CHV1-IT254" FT /mol_type="genomic RNA" FT /country="Italy" FT /collection_date="1993" FT /db_xref="taxon:40281" FT CDS 111..1979 FT /codon_start=1 FT /product="polyprotein" FT /note="ORFA; p69" FT /db_xref="GOA:E2GDE8" FT /db_xref="InterPro:IPR002704" FT /db_xref="UniProtKB/TrEMBL:E2GDE8" FT /protein_id="ADO15044.1" FT /translation="MSCLRKPSQSLVLSESVDPTTVDPFVDVRAEEVVPTGCMTLWEYR FT DSCGDVPGPLSHGDLRRLRTPDGVCKCQIHFELPTVLKSGSTGTVPEHPAVVAAFMGRP FT RRCSLEQRTKELDFRFLRLVHEGLPVRPSYMMARPPRPVRGLCSSRDGSLAQFGQGYCY FT LSAIVDSARWRVARTTGWCVRVADYLRLLQWVGRRSFGSFQIEESAVEHVYHVIVDTEY FT QSEQDGALFYQAVSDLAARDPLARIGNQLNPLAAEFCPRSARRVEPVAPQVTRRKGLAR FT MPGRSPTVVSVGKVGMAITSIQDALVATELRNANFGRRDTEAECRRLWARYEVNDYFRR FT HKAELLKFDARLRSHMAKKPVSVRIRSSDAKIQCIGWRDRHLLPQRLAGLTKQKRSLIW FT SRFATSNIRRKASACTMTPSVDPMVHTWGDSAALAAKKISEARRRQEIRAAAYAERAKA FT RGQTNVVASISEAIETTLRRNGTRFALDGLHVAASAIVTTRLRSWNQEEVLAGREFRKS FT TTSWIWRHMPSSIQDALNLTSVRDKLDPGRAFGYVQAAVAQGMSDFRRAKRSLAIVAKP FT VIRNVRDPYDYGFVKRDGKLRHSRDVSNKKLRTKAVAATKVHKIIF" FT CDS 1979..>3232 FT /codon_start=1 FT /product="p48" FT /note="ORFB" FT /db_xref="InterPro:IPR005315" FT /db_xref="UniProtKB/TrEMBL:E2GDE9" FT /protein_id="ADO15045.1" FT /translation="MYKEAERPIEVWRTQVMDGPTWTALSEPCRNRLFFASGTGGEHLT FT LDIIQPDSYTKIRLFRSGRFEVSVDGKSFGQGGNRYRFVFRYDSLLSTPFGYPAEDKEM FT ALQGYNHEQLLGEMFLKLPDSYVDGRPIAEAFFRYVDDLKWDVGVFRDRRSLTELHLPA FT SSGLITEQARVAKLEWPPLPIIQAQPTILAGIIDNFKICFPVNGKWVYGQGLSWTRYDG FT DASVPISLLTNRQHARFWNEKDVPTGLKLSKEGFIKLWAQKSRKWQDHMARAIGLSHAA FT TAELVRATKVNEAKPHLVPMEEAKEAPRQQLVPRRSTFVDSHEKEVEVDPLRLPTEEGR FT CFELLFNNQVTPAIFDKKPLLRDVLAVFKENVCTMDSLEISHSDRCVHIVAGETFRNYK FT EIKAVLEVIIWNDPNILVG" XX SQ Sequence 3232 BP; 697 A; 861 C; 918 G; 756 T; 0 other; accagtcgtt gtttgccggc aatggccaca tacggtttcg tgctttgcgt gaagaagcac 60 ggtctctaac gagtacatgt ccggttggcc ccgaacgagg cccgattaac atgtcttgtc 120 ttagaaaacc cagtcagagt ctggtgctct ctgaaagtgt tgatcctact acagtggatc 180 ctttcgtcga cgtgagggcg gaagaggtgg tccctacagg ttgcatgacc ctatgggagt 240 acagagactc gtgtggcgac gtgcctggcc cgttgtcgca tggtgatctc cggcgtttac 300 gcacccctga cggggtgtgc aagtgccaaa tccactttga gttgccgacc gtgctcaaga 360 gtggttccac cggaacggtc ccggaacacc ccgcggtagt ggctgccttc atgggcaggc 420 cacgccggtg ttctttggaa caacgtacga aggaactgga tttccgattc cttcggttgg 480 tgcatgaggg tctccctgtg aggccgtcat acatgatggc tcgtccgccc aggccagttc 540 gaggcctgtg ctcatctcgg gacggttccc ttgcccagtt cgggcagggt tactgttatc 600 tctctgccat tgtggatagc gcaagatggc gcgttgctcg taccaccgga tggtgtgttc 660 gggtggcaga ctatctgagg ctgctgcaat gggttggtcg tcgatccttt ggttccttcc 720 agattgagga aagtgccgtc gaacacgttt atcacgtgat cgtcgacacc gagtatcagt 780 ctgagcagga tggggccctt ttctaccagg ccgtttcgga cctggcagca agggatcccc 840 tcgcccggat cggcaaccaa ttgaatccgc tcgctgctga gttctgtccc agaagcgccc 900 gtagggttga acctgtggct ccacaggtta cccgccgcaa aggtctggct cggatgcctg 960 gtcgtagtcc aaccgttgtc tccgttggca aggttggcat ggccatcacc agcatccagg 1020 atgctctcgt ggccacggag ttgaggaacg ccaacttcgg ccgtcgtgac acggaagctg 1080 agtgtcgccg cctttgggcg cgatacgagg tgaacgatta tttccgtcgt cacaaggccg 1140 aactcctcaa gttcgatgcg cgccttcggt cgcacatggc caagaaacct gtgtcggtaa 1200 ggattcgttc ttccgacgca aagattcaat gtatcgggtg gcgtgatcgt cacttgctac 1260 cgcaacgcct tgctggcttg accaagcaaa agcgttccct tatctggtcg cggttcgcga 1320 ccagcaacat tcggcgcaag gcctcggcct gcaccatgac cccgagtgtg gatcctatgg 1380 tccacacctg gggagattcc gctgccctgg cagcgaagaa aatctccgaa gcacgccggc 1440 gacaagagat tcgcgctgca gcctacgccg agcgggccaa agctcggggg cagaccaatg 1500 tcgttgcttc catttcggaa gcaattgaaa ccactctaag gcggaatggg acccgctttg 1560 ccttggatgg tcttcatgtg gcggcatctg ccattgttac gacccggttg aggtcgtgga 1620 atcaagagga agttctcgct ggccgcgaat tccgcaaatc aaccacttcc tggatctgga 1680 ggcacatgcc ttcctcgatc caagatgccc tgaacctgac ttcggtcagg gacaagctcg 1740 accccggccg cgcgtttggt tacgtgcaag ccgcggtcgc gcagggcatg tccgacttcc 1800 ggcgggcaaa acggtctttg gcaatcgttg ccaagcccgt catccggaac gttcgtgatc 1860 cctacgatta cggatttgtc aaacgtgatg gtaagcttcg ccattcacgt gacgtgtcta 1920 ataagaagct gcgtacaaag gctgtggccg ccacgaaggt ccacaaaata atattttaat 1980 gtataaagaa gccgaacgac ctattgaggt gtggcgaaca caggtcatgg atgggccaac 2040 atggactgcc ctttctgagc cgtgcaggaa caggttattc tttgcatccg ggacaggtgg 2100 tgagcaccta acgctcgaca tcatccaacc tgattcgtac accaagatac gcttgtttcg 2160 cagcggtcgg ttcgaggtgt cggttgacgg aaagagtttc ggtcagggag gcaaccgtta 2220 taggttcgtc tttcgctatg actctttgct gtcgacacct tttggttatc ctgccgagga 2280 caaggaaatg gcgcttcaag gttacaatca cgaacagttg ctgggtgaga tgttcctgaa 2340 gttgcctgat tcctatgttg acggaaggcc gatcgctgag gctttcttcc gttatgtcga 2400 cgacctgaaa tgggatgtcg gcgtgttccg tgatcgcagg tcgctaacgg aacttcattt 2460 accagcatcg tctggtttaa taaccgaaca agctcgggtt gccaagctcg aatggccgcc 2520 actacctatc atccaggccc agccgacaat actggctggc atcattgaca acttcaagat 2580 ctgtttcccc gtaaacggga aatgggtcta tggacagggg ttgtcgtgga ccaggtacga 2640 tggagatgcg tccgttccta tctcattgtt gacgaatcga cagcacgcga ggttctggaa 2700 cgagaaggac gtccccaccg gtttgaagct ttccaaggaa ggcttcatca aactctgggc 2760 ccagaaatct cgcaagtggc aggaccacat ggcgagagcg ataggcctaa gtcacgcagc 2820 aactgctgag ctggtgcgtg caacaaaagt caatgaagca aaacctcatc tcgtccctat 2880 ggaagaggcg aaggaggctc ctaggcaaca gcttgttcct aggaggtcca ccttcgtgga 2940 cagccacgag aaagaggttg aggttgaccc tcttcgttta ccgaccgagg agggtcgatg 3000 cttcgaactt ttgtttaata atcaagtaac ccccgcgatt ttcgacaaga aaccattgct 3060 gagggatgtt ctcgctgtgt tcaaagagaa cgtctgcaca atggactcgc ttgaaatcag 3120 tcacagtgac agatgtgtgc atatcgtcgc tggcgaaacc ttccggaact ataaggagat 3180 caaggccgtt ctcgaggtca tcatctggaa cgatcctaac atccttgttg gt 3232 //