Dbfetch
ID HM236371; SV 1; circular; genomic DNA; STD; VRL; 2555 BP. XX AC HM236371; XX DT 29-SEP-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Rhynchosia rugose golden mosaic virus-[Cuba:Camaguey:171:2009] segment DE DNA-B, complete sequence. XX KW . XX OS Rhynchosia rugose golden mosaic virus-[Cuba:Camaguey:171:2009] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2555 RX DOI; 10.1007/s00705-010-0803-0. RX PUBMED; 20852903. RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.; RT "Two novel begomoviruses belonging to different lineages infecting RT Rhynchosia minima"; RL Arch. Virol. 155(12):2053-2058(2010). XX RN [2] RP 1-2555 RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.; RT ; RL Submitted (17-MAY-2010) to the INSDC. RL Departamento de Proteccion de Plantas, Centro Nacional de Sanidad RL Agropecuaria, Carretera de Tapaste km 3 1/2, San Jose de Las Lajas, La RL Habana 32 700, Cuba XX DR MD5; f5748999990f86647c95afafa5183c14. XX FH Key Location/Qualifiers FH FT source 1..2555 FT /organism="Rhynchosia rugose golden mosaic FT virus-[Cuba:Camaguey:171:2009]" FT /segment="DNA-B" FT /host="Rhynchosia minima" FT /isolate="171" FT /mol_type="genomic DNA" FT /country="Cuba:Camaguey" FT /collected_by="E. Fiallo-Olive" FT /collection_date="2009" FT /clone="171E" FT /db_xref="taxon:889203" FT gene 375..1145 FT /gene="BV1" FT CDS 375..1145 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttling protein" FT /db_xref="GOA:E2G6Z6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:E2G6Z6" FT /protein_id="ADN84050.1" FT /translation="MYPTRFRRGSSYPQRRFVARNHGNKRATFVRRSDGKRRNGPSSKA FT HDDPKMTSQRIHENQYGPEFVMTHNSAISTFINFPVLGKSEPNRSRSYIKLKRLSFKGT FT VKIERVHADVNMDGLSSKIEGVFSLVIVVDRKPHLSSSGGLHTFDELFGARIHSHGNLA FT ITPALKDRYYVRHVLKRVLSVEKDSVMVDLEGSATISNRRYNCWATFKDLEHDSCNGVY FT ANISKNAILVYYCWISDAMSKASTFVSYDLHYVG" FT gene complement(1204..2073) FT /gene="BC1" FT CDS complement(1204..2073) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /db_xref="GOA:E2G6Z7" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:E2G6Z7" FT /protein_id="ADN84051.1" FT /translation="MESQLANPPNAFNYIESHRDEYQLSHDLTEIILQFPSTAAQLTAR FT LNRSCMKIDHCVIEYRQQVPINATGSVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKIHS FT KQFSHKDVDFSHVDYGPWERKTLRSTSMSRFGLPGPIELKPGESWASRSTIGRTHTETE FT SEIHPYRELNRLGPSVLDPGDSASQVGLQRAQSNITMSMAQLNELVRTTVQECINNNCN FT PSQPKSLQ" XX SQ Sequence 2555 BP; 720 A; 473 C; 558 G; 804 T; 0 other; accggatggc cgcgattttt tggagtcctg gcgctgggga ccatcccccg ctcccctttg 60 gcgcactctc tctcttcctt tgacgtggcg cgttgaacac cgttggataa ctcttatctc 120 tgtgtgaaac ctttaatttg aaatttgaaa taattgggcg cacatgtcta ttttgaacgg 180 tcttcgtaac gataaggttt ctgacacatt gtacgttatg tggaacgtgg cccaattata 240 tttcagctgt ggagttaaac tatcgcttat tttgaacggc cctttctata taatggacga 300 tagtttaata ttttaaatcg tcttttgaca ttaaaaccaa aataacctat tattttgtac 360 aggtagattg aattatgtat cctacaaggt ttagacgtgg gtcatcttat ccccaaagac 420 gatttgttgc acgtaatcat ggtaataagc gtgcaacttt tgttagacgg agtgatggga 480 aacgtcgtaa tggcccatca agtaaagccc atgatgaccc caagatgacg tcgcaacgca 540 tacatgaaaa tcaatatggg cctgaatttg tcatgaccca taattcagct atttcaactt 600 tcattaattt ccctgtactt ggtaagagtg aacctaaccg aagcaggtcg tacattaagt 660 tgaagcgttt atcatttaag ggaaccgtta aaattgaacg tgtacatgct gatgtcaaca 720 tggacggact aagttccaag atagaaggtg tgttttctct tgttattgtt gtggatcgca 780 aaccacattt aagctcctct ggaggtttac acacatttga tgaactattt ggagcaagaa 840 tccacagtca tgggaactta gctattacac ccgctttgaa agatcgttat tacgttcgcc 900 atgttttgaa gcgtgtattg tccgtggaga aagacagtgt tatggtcgat cttgaaggat 960 cggcaaccat ttctaatagg cgttacaact gttgggccac atttaaggat cttgaacatg 1020 actcatgtaa cggtgtttac gcgaatataa gcaagaacgc cattttagtt tattattgtt 1080 ggatttccga tgctatgtct aaggcatcaa cttttgtatc atatgacctt cattatgtgg 1140 gttaaacatg aataaaatgg cgttaaagtt gatcatatgc ataattaatc aaaataagca 1200 attttattgc aatgactttg gttgtgaagg attacaatta ttgttaatac actcctgcac 1260 cgttgtccta acaagctcgt ttaattgggc catggacatc gttatatttg attgggccct 1320 ctgtaacccg acctgtgatg ctgaatcacc tgggtctagc acgcttggtc ctagacgatt 1380 aagctctcta tatgggtgta tttctgactc cgtctccgtg tgagtccttc caatagtgct 1440 ccttgaggcc catgactcac ctggttttaa ttcaattggg cctggtagcc caaatctgga 1500 cattgatgtg gacctcaagg ttttcctttc ccacggtcca taatcgacat gcgagaaatc 1560 aacatctttg tgcgaaaact gtttggaatg aattttgacc gtgggagccc ggaagggtat 1620 atctacagag tgtttagcgg tagacaattt caatttgcct ttgaatttgg caaaatgggt 1680 acgctgatga acatttgtat ctgacactct gtagtataat ttccatggaa ttgggtcttt 1740 taacgaaaag aatgacgatg agaaataatg gaggtctatg ttgcatctta tgggaaacgt 1800 ccatgatgct tgtaaggatt cgttgtccgt cattcttttg tcatgaattt ctacaatgac 1860 agacccagtt gcgttaattg gtacttgttg cctgtattcg atgacgcaat ggtctatctt 1920 catacagcta cgattgagcc ttgcagttaa ttgtgcagct gtggaaggaa attgaagaat 1980 aatctcagtt agatcatgag acagctgata ttcgtctcta tgagactcta tgtaattaaa 2040 cgcatttgga ggatttgcta actgagattc catatacgaa aaaatggccg cgcagcggaa 2100 ctgggtttaa taatatctgg gttgaacaat atctgggttc aacaacaaaa taagccagcg 2160 aagtagaaca tgaatgtgtt tgacaaagac cagaaaagga gttcaactat ttcaataaca 2220 aactgggttt atatatacat atacaatatc tgggtatgtt aacaagaagg atatgacgaa 2280 agtgtttcag gaaagatgaa taagtttggt tatttccaga acttgtgttt aatcacgtaa 2340 gtgtaaccgt gtttatatag agagcgaatt tgaagtaagt tagaaacgct ctgaaggtta 2400 tgttagtggc agatgcgtaa taagaagggt gtaccccgat tgagctctct caaatctgtg 2460 ctatgaattg gggtcctggg gtcccttata tactagaagt ctctatagaa ctctcaatcc 2520 tcatcgcaca cgtggcggcc atccgctata atatt 2555 //