Dbfetch
ID HM236369; SV 1; circular; genomic DNA; STD; VRL; 2542 BP. XX AC HM236369; XX DT 29-SEP-2010 (Rel. 106, Created) DT 19-NOV-2010 (Rel. 106, Last updated, Version 2) XX DE Rhynchosia golden mosaic Havana virus-[Cuba:Havana:28:2007] segment DNA-B, DE complete sequence. XX KW . XX OS Rhynchosia golden mosaic Havana virus-[Cuba:Havana:28:2007] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2542 RX DOI; 10.1007/s00705-010-0803-0. RX PUBMED; 20852903. RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.; RT "Two novel begomoviruses belonging to different lineages infecting RT Rhynchosia minima"; RL Arch. Virol. 155(12):2053-2058(2010). XX RN [2] RP 1-2542 RA Fiallo-Olive E., Navas-Castillo J., Moriones E., Martinez-Zubiaur Y.; RT ; RL Submitted (17-MAY-2010) to the INSDC. RL Departamento de Proteccion de Plantas, Centro Nacional de Sanidad RL Agropecuaria, Carretera de Tapaste km 3 1/2, San Jose de Las Lajas, La RL Habana 32 700, Cuba XX DR MD5; 9e2187ccbc504717c85071afcf8ac187. XX FH Key Location/Qualifiers FH FT source 1..2542 FT /organism="Rhynchosia golden mosaic Havana FT virus-[Cuba:Havana:28:2007]" FT /segment="DNA-B" FT /host="Rhynchosia minima" FT /isolate="28" FT /mol_type="genomic DNA" FT /country="Cuba:Havana" FT /collected_by="E. Fiallo-Olive" FT /collection_date="2007" FT /clone="28X" FT /db_xref="taxon:889202" FT gene 373..1143 FT /gene="BV1" FT CDS 373..1143 FT /codon_start=1 FT /gene="BV1" FT /product="nuclear shuttling protein" FT /db_xref="GOA:E2G6Y9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR001530" FT /db_xref="UniProtKB/TrEMBL:E2G6Y9" FT /protein_id="ADN84043.1" FT /translation="MYFSRNRRGSFYSQRRGYGRNYLPKRSVGVKRNDSKRRYGQLGKV FT CDDSKMFNQRIHENQFGPEFVMAHNTAISTFINYPHLGKTEPNRSRSYIKLKRLRYKGT FT VKIERVHADVNMDVLTPKIEGVFSLVIVVDRKPHLTASGCLLTFDELFGARIHSHGNLA FT ISPCWKDRFYIRNVFKRVLSVEKDTTMIDVEGSTTLSNRRFNLWSTFKDIDHDSCNGVY FT ANISKNALLVYYCWMSDAMSKASSFVSFDLDYVG" FT gene complement(1187..2068) FT /gene="BC1" FT CDS complement(1187..2068) FT /codon_start=1 FT /gene="BC1" FT /product="movement protein" FT /db_xref="GOA:E2G6Z0" FT /db_xref="InterPro:IPR000211" FT /db_xref="UniProtKB/TrEMBL:E2G6Z0" FT /protein_id="ADN84044.1" FT /translation="MDSQLPSAPDAFNYIESHRDEYQLSHDLTEIVLQFPSTASQLSAR FT LSRSCMKIDHCVIEYRQQVPINATGSVIVEIHDRRMTDNESLQASWTFPIRCNIDLHYF FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS FT KQFSNRDVDFSHVDYGKWERKTIRSASLSRYGLQGPIELKPGESWASKSTIGLSHTDAD FT SDIENAIHPYRQLNRLGTSVLDPGDSASIVGSQRTQSNITMSIAQLNEIVRTTVHECIN FT SNCNPTQPKSLQ" XX SQ Sequence 2542 BP; 684 A; 441 C; 564 G; 853 T; 0 other; accggatggc cgacccgggg tattggtgta tgcctttccc ccgcgcgctt ctcttctctc 60 cgtacgccgc atttgctttc ccattttgcc cttaccatgt ggcgcatcac agaccgttgg 120 ataaacttag cgcttgtgac cgttggattg cgctataacg tttgaatttt gaattattga 180 tggtcccgag gctgacgtat gccacgtgaa caagtggatt gtgtggtcta catactggtg 240 tctttgatac gtggaccagt caaaattcat attgtgcgtc tatttaaatc ctcgaggtca 300 tgtacattct ttatatattg gatcttttat tggttttgat atctattgtt gacattgtga 360 agaggattta caatgtattt ttctagaaat cgacgtggat cgttttattc tcaacgacga 420 ggttatggtc gtaattattt gcccaaacgt tcagttggtg tgaaacggaa tgattccaaa 480 cgtcgatacg gtcaactagg taaagtgtgt gatgattcta aaatgtttaa tcaacgaatc 540 catgaaaatc aatttgggcc cgaatttgtt atggcccata atacagccat atctacgttc 600 attaattatc ctcacttggg aaagactgag cccaatcgaa gcagatcata tattaagtta 660 aaaagactac gttataaagg aacagtgaag atagaacgtg ttcatgccga tgtgaatatg 720 gacgttttaa cccccaaaat tgaaggtgtt ttctctttgg ttattgtggt tgatcgtaaa 780 ccacatttga ctgcaagtgg ttgtctgctt acatttgatg aattatttgg agcacgaatt 840 catagtcatg gaaacttggc tattagtccc tgttggaagg accgttttta tatacggaat 900 gtgtttaagc gtgtgttatc cgtggagaag gacaccacga tgatcgatgt tgaaggttca 960 accactcttt caaataggcg ttttaattta tggtctactt ttaaggatat tgatcatgat 1020 tcatgtaacg gtgtttatgc taacattagt aagaacgccc ttctagttta ttattgttgg 1080 atgtcagatg ctatgtctaa agcatcctca tttgtgtcgt ttgaccttga ttatgttggt 1140 taaatatgta gtaatgaaca acaatatgta taaataaaat actcatttat tgtaatgatt 1200 tcggttgcgt cggattacaa ttgctgttta tacattcgtg cactgttgtc cgaactatct 1260 cgtttaattg agctatggac attgttatgt tggactgtgt tctctgggat cctacaatcg 1320 aagccgagtc tcctgggtct aatacgcttg ttccaagcct gtttagttgt ctgtatgggt 1380 gtattgcgtt ctctatatct gagtccgcat ctgtatggct caatccaatt gtgcttttac 1440 tggcccaaga ttcgcccggt tttaattcaa ttgggccttg tagtccatat cttgataatg 1500 atgcggacct tatcgtcttt ctttcccatt ttccatagtc cacgtgtgag aaatccacat 1560 ctctgttaga aaactgtttg gaaaggattt ttacggttgg ggctctgaac ggtatatcca 1620 ctgagtgctt cgccgtggat aattttagtt ttcctttgaa ttttgcgaaa tgtgtccttt 1680 ggtggacgtt tgtatcagac actcgataat acagtttcca tggtatgggg tctttcagtg 1740 agaagaaaga cgaagaaaaa tagtggagat ctatgttgca tctgattgga aacgtccagg 1800 atgcttgtaa tgattcgttg tccgtcattc ttctgtcatg aatctccact attacggaac 1860 ctgttgcgtt aataggtacc tgttgtctat attctatgac gcagtggtct attttcatac 1920 agctacgact gagtcttgct gacaattgag acgctgtaga aggaaattgc aggacaattt 1980 ctgttagatc atgagaaagc tgatattcat ctctgtgaga ctcaatataa ttaaatgcat 2040 cgggagcact tggtaactga gaatccattt aataatatat ggccgcgcag cggaattgtt 2100 tatgtagatg aagatattga aaggggtaat ctaataagaa ccatatatga ttaaataatg 2160 cgatatgttg ccccaaactg tgtgcatatg tttttgagct gttgacaaag atgacagtac 2220 tcaagatgat caaggttttc agagacaaac atgataaaca attacacaga tgggtatact 2280 atgcagtaac aggcagggca gtgaacaatt aaaataaata gtgtaataga ttcaaggaat 2340 gcgtcgacag gtatgaggaa tccatgatag aggtgtcatt attatatagg cgaagcgaga 2400 gtggcattct tgtaataaga ggggtgtacc ccgattgagg ctctcaacac tggctcatta 2460 tattggtgta ttggggtgca atatatagta taccttctat tctattgatt ttgtacacgt 2520 ggaggccatc cgctataata tt 2542 //