ID HM235774; SV 1; circular; genomic DNA; STD; VRL; 2743 BP. XX AC HM235774; XX DT 27-APR-2012 (Rel. 112, Created) DT 27-APR-2012 (Rel. 112, Last updated, Version 1) XX DE Cotton leaf curl virus isolate Naruana-Punjab segment DNA-A, complete DE sequence. XX KW . XX OS Cotton leaf curl virus OC Viruses; Geminiviridae; Begomovirus; unclassified Begomovirus. XX RN [1] RP 1-2743 RA Chakrabarty P.K., Sable S.V., Kalbande B.B., Chavhan R.L., Monga D., RA Koundal V., Kumar D., Pappu H.R.; RT ; RL Submitted (15-MAY-2010) to the INSDC. RL Division of Crop Improvement, Central Institute for Cotton Research, Post RL Bag No. 2, Shankar Nagar, P.O., Nagpur, Maharashtra 440010, India XX DR MD5; 724affee901108d4a09f9fe1c2927432. XX FH Key Location/Qualifiers FH FT source 1..2743 FT /organism="Cotton leaf curl virus" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /isolate="Naruana-Punjab" FT /serotype="SV" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="P.K. Chakrabarty, Suchitra Sable and Dilip FT Monga" FT /collection_date="Aug-2006" FT /db_xref="taxon:53010" FT gene complement(75..806) FT /gene="AC5" FT CDS complement(75..806) FT /codon_start=1 FT /gene="AC5" FT /product="ac5 protein" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:I1SZF2" FT /protein_id="AEI52863.1" FT /translation="MNILHSRRTGLIIKHIKYLSKILRFINRSTISNQEKHHTIRVILR FT LNVLIHPYLTQHINRLDTKSLTNSMGQPSTTSNITNTHYFTYMLNIMSGLKRLNLTWTF FT TSSRNIWTSVHPVHPGLPVHRPVCPCLLFCDADNGGSSTAGVWAAEVQTPAYFRRGRRN FT DDIGSSLRHNYGSVKYKLNPVLTRTQAYPVNNPATKVANISQKAYTETREPYQGIRLIV FT DPTCLNLKLSAQVLIVCGSVI" FT gene 131..487 FT /gene="AV2" FT CDS 131..487 FT /codon_start=1 FT /gene="AV2" FT /product="precoat/movement protein" FT /db_xref="GOA:Q8AZ64" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q8AZ64" FT /protein_id="AEI52857.1" FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQDVQDVQKSRCS" FT gene 291..1061 FT /gene="AV1" FT CDS 291..1061 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:I1SZE0" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I1SZE0" FT /protein_id="AEI52858.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWYATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1027..1464) FT /gene="AC3" FT CDS complement(1027..1464) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="ren" FT /db_xref="GOA:I1SZE1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I1SZE1" FT /protein_id="AEI52859.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLHFNSLQSHKNIS" FT gene complement(1157..1609) FT /gene="AC2" FT CDS complement(1157..1609) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:Q1KSG4" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q1KSG4" FT /protein_id="AEI52860.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKRRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNIPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1506..2588) FT /gene="AC1" FT CDS complement(1506..2588) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:I1SZE3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I1SZE3" FT /protein_id="AEI52861.1" FT /translation="MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNIQTPTSKKYIRI FT CRELQDDSSLHVLIQFEGKFKYIQGAKSSSDVKSHIEKDGDNIQGAKSRRKEIVKSYIE FT EDGDILDWGNSDRRKVSRGGTDSNDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLN FT ANLDRIFQEPPAPYVSPFSSSSFDQVPEELEVWADENVVSAAARANRPISVVIEGDSRT FT GKTMWARSLGPHNYLCGHLDLSPRVYSNDAWFNVIDDVDPHYLKHFKEFMGAQKDWQSN FT TKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKNWALKNAIFITLDRPMYSG FT TNQSTAQGSEEAQQEEESRS" FT gene complement(2138..2437) FT /gene="AC4" FT CDS complement(2138..2437) FT /codon_start=1 FT /gene="AC4" FT /product="ac4 protein" FT /db_xref="UniProtKB/TrEMBL:I1SZE4" FT /protein_id="AEI52862.1" FT /translation="MTPHFMFSSSSKGNSSTYRELNPAPTSNPTSRRTGTTYRELNRAA FT KRLSNPTSRRTGTFSTGAIQIDGRSAEEAQTAMTLTPQHLTREVSRRLLESLRN" XX SQ Sequence 2743 BP; 724 A; 558 C; 622 G; 839 T; 0 other; accggatggc cgcgcgattt ttttgtgggc cttaccatta acacttgtcg gccaatcata 60 tgactccctc aaagctaaat aacgctcccg cacactataa gtacttgcgc actaagtttc 120 aaattcaaac atgtgggatc cactattaaa cgaattccct gatacggttc acgggtttcg 180 gtgtatgctt tctgtgaaat atttgcaact tttgtcgcag gattattcac cggatacgct 240 tgggtacgag ttaatacggg atttaatttg tattttacgc tcccgtaatt atgtcgaagc 300 gagctgccga tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg 360 gcagcccata caccagccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat 420 ggacaaacag gcctatgaac aggaagccca ggatgtacag gatgtacaga agtccagatg 480 ttcctagagg atgtgaaggt ccatgtaagg ttcagtcgtt tgagtccaga catgatattc 540 agcatatagg taaagtaatg tgtattagtg atgttactcg tggtactggg ctgacccata 600 gagttggtaa gagattttgt gtcaagtctg tttatgtgtt gggtaagata tggatggatg 660 agaacattaa gacgaagaat cacacgaata gtgtgatgtt tttcttggtt agagatcgta 720 gacctgttga taaacctcaa gattttggag aggtatttaa tatgtttgat aatgagccca 780 gtacggcgac tgtgaagaat gttcatcgtg ataggtatca agttctgcgc aaatggtatg 840 caactgtcac cggtggacaa tacgcttcaa aggaacaggc tttggtcaag aagtttgtca 900 gagttaacaa ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcatacgg 960 aaaatgcgtt aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt 1020 tgaagattag gatatatttt tatgactctg taacgaattg aaatgaagtt tgaattttat 1080 ttctgaatat tgatctacat acatagtttg ttggattaca ttgtacaata catgttctac 1140 agctttaata actaaattaa ttgaaattac accgagattg ttcagatatt tgaggacttg 1200 ggttttgaat acccttaaga aaagaccagt ctgaggctgt aaggtcgtcc agattcggaa 1260 tgttagaaaa cacttgtgca gtcccagagc tttccgagtg ttgtagttga actggatcct 1320 gatcgtgagt atgtccatat tcgtcgtgaa tggacggttg acgtggctga tgatcttgaa 1380 ataaagggga tttggaacct cccagatata tgcgccattc cctgcttgag ctgcagtgat 1440 gggttcccct gtgcgtgaat ccatggttgt ggcagttgat tgacagataa taagaacacc 1500 cgcattcaag atctactctc ctcctcctgt tgcgcctctt cgcttccctg tgctgtactt 1560 tgattggtac ctgagtacat gggtctatca agtgtgatga agatcgcatt ctttaaagcc 1620 caatttttta gtgcagaatt cttttcttca tccaaaaact ctttatagct tgaattgggt 1680 cctggattgc agaggaagat agtgggaatt ccgcctttaa tttgaactgg cttcccgtat 1740 tttgtatttg attgccagtc cttttgggcc cccatgaact ccttaaagtg ctttaggtaa 1800 tgcgggtcga cgtcatcaat gacgttaaac caggcgtcat tactgtatac ccttgggctc 1860 agatctagat gtccacacag ataattatgt ggacctaatg atctggccca catcgtcttc 1920 cccgtcctac tgtcaccctc aatcactaca cttattggtc tattggcccg cgcagcggca 1980 ctgacgacgt tctcgtcagc ccacacttca agttcttctg gaacttgatc gaaagaagaa 2040 gaggaaaaag gagaaacata aggagctggt ggctcctgaa agattctgtc tagatttgca 2100 tttaaattat gaaattgcag tacaaaatcc ttaggagcta gttccttaat gactctaaga 2160 gcctccgact tacttcccgc gttaagtgct gcggcgtaag cgtcattgct gtctgtgcct 2220 cctctgctga ccttccgtcg atctgaattg ccccagtcga gaatgtcccc gtcctcctcg 2280 atgtaggatt tgacaatctc tttgcggcgc gatttagctc cctgtatgtt gtccccgtcc 2340 ttctcgatgt gggatttgac gtcggagctg gatttagctc cctgtatgta cttgaatttc 2400 ccttcgaact ggatgagaac atgaagtgag gagtcatctt gaagctctct gcagattcta 2460 atatattttt ttgaagttgg ggtttgtata tttaataatt gggaaagtgc ttcctctttg 2520 gtgagagaac atttggggta agtgatgaaa tagtttttgg aataaatacc gttccgcttt 2580 ggaggcatgt tgactaaaat tgatcaccga ttgaccgctc ttgcaactct ccccggtata 2640 tcggtgatca atatatagtg atcaccacat ggcataatgg taataaaaaa actttaattt 2700 gaaattcaaa ccaaaaggct aaagcggcca tccgtttaat att 2743 //