ID HM230683; SV 1; circular; genomic DNA; STD; VRL; 2740 BP. XX AC HM230683; XX DT 27-SEP-2010 (Rel. 106, Created) DT 27-SEP-2010 (Rel. 106, Last updated, Version 1) XX DE Jatropha mosaic India virus-[Lucknow] strain SK-2 segment DNA-A, complete DE sequence. XX KW . XX OS Jatropha mosaic India virus-[Lucknow] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2740 RA Snehi S.K., Raj S.K., Prasad V.; RT "Molecular characterization of a Begomovirus causing mosaic disease on RT Jatropha curcas L. in India"; RL Unpublished. XX RN [2] RP 1-2740 RA Snehi S.K., Raj S.K., Prasad V.; RT ; RL Submitted (13-MAY-2010) to the INSDC. RL Plant Molecular Virology Lab, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 21eb7dd3321e2dca4e4a784078922b0f. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Jatropha mosaic India virus-[Lucknow]" FT /segment="DNA-A" FT /host="Jatropha curcas L." FT /lab_host="Nicotiana tabacum cv. White Burley" FT /strain="SK-2" FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India:U.P., Lucknow" FT /collected_by="S. K. Snehi" FT /collection_date="Jun-2009" FT /identified_by="S. K. Raj" FT /clone="SKS-1" FT /db_xref="taxon:569949" FT gene 135..491 FT /gene="AV2" FT CDS 135..491 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:E2FZU6" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:E2FZU6" FT /protein_id="ADN42965.1" FT /translation="MWDPLLNEFPDSVHGFRCMLALKYLQLVESTYSPDTLGYDLIRDL FT ISVIRARSYVEATRRYHHFNSRLEGTSPSDLRQLIQQPCFCLHCPRHQKTSLDKQAHES FT EAQMVQDVQKPRCS" FT gene 295..1065 FT /gene="AV1" FT CDS 295..1065 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /note="involved in encapsidation of virion" FT /db_xref="GOA:E2FZU7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:E2FZU7" FT /protein_id="ADN42966.1" FT /translation="MSKRPGDIIISTPASKVRRRLIFDSLYSSRASVFTVRVTKRQAWT FT NRPMNRKPRWYRMFRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1062..1466) FT /gene="AC3" FT CDS complement(1062..1466) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /note="increases viral replication" FT /db_xref="GOA:E2FZU8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:E2FZU8" FT /protein_id="ADN42967.1" FT /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFGTTMDI FT ITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFKTHVLKYLDMLGVICINT FT VLTAVEHVLYSVLTGTDSIEQSNLIKFKIY" FT gene complement(1207..1614) FT /gene="AC2" FT CDS complement(1207..1614) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /note="transcriptional activator for virus sense genes" FT /db_xref="GOA:E2FZU9" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:E2FZU9" FT /protein_id="ADN42968.1" FT /translation="MRPSSPSTGHSTPVPIKVKHRAAKRRAIRRRRVDLNCGCSYYVHI FT NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVRNDDGHNNRPDTVQPQ FT PEESVGTTSMLDGFQNLDDLTASDLAFLEGI" FT gene complement(1559..2602) FT /gene="AC1" FT CDS complement(1559..2602) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /note="involved in virus replication" FT /db_xref="GOA:E2FZV0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:E2FZV0" FT /protein_id="ADN42969.1" FT /translation="MSPPKRFIINAKNYFLTYPRCSLSKEETLSQIKNLETPTNPKFIK FT ICRELHENGEPHLHVLVQYEGKFKCQNKRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQVDGRSARGGQQSANDAYAAAINSGSKSEALKILRELAPKDYVLQFH FT NLNANLDKIFTTPETIYESPFGLSTFDRVPEELDVWFHENVMDPAARPLRPKSIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPL FT YSSADQG" FT gene complement(2143..2445) FT /gene="AC4" FT CDS complement(2143..2445) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:E2FZV1" FT /protein_id="ADN42970.1" FT /translation="MGNLICMCSSSTRASSNARIRDSSTWYPQPGQHISIQTFRELNPA FT PTSSPTSTRTEILWNGENSRSTAGLHGEANSRQMMHTPPQLTAAVSQRLLRSLES" XX SQ Sequence 2740 BP; 667 A; 620 C; 662 G; 791 T; 0 other; accggatggc cgcgctccct gctttgtggt tccccccccc cacgtggagt tgtcgcccac 60 tcagaacgct gcgtcaagct tgaatatctg tggtccctgt ttaagtactt cgtgagcaag 120 ttaatacttg caaaatgtgg gatccactac ttaacgagtt cccagactcc gttcacggtt 180 tccgttgtat gctagcgctg aagtaccttc agctcgtcga aagtacttat tcccctgata 240 cgctcggtta cgatctaatc cgggacctga tttctgttat cagggccaga agctatgtcg 300 aagcgaccag gagatatcat catttcaact cccgcctcga aggtacgtcg ccgtctgatc 360 ttcgacagct tatacagcag ccgtgcttct gtcttcactg tccgcgtcac caaaagacaa 420 gcctggacaa acaggcccat gaatcggaag cccagatggt acaggatgtt cagaagccca 480 gatgttccta ggggatgtga aggcccatgt aaggtccagt cgtttgagtc cagacacgat 540 gtggtccata taggtaaggt aatgtgcatc tctgatgtca ctcgtggtgt tgggctaact 600 catcgtgtgg gtaagaggtt ttgcgttaag tccgtttaca tcctggggaa ggtatggatg 660 gatgaaaata tcaagaccaa gaatcacact aatagcgtga tgttcttcct cgttagggat 720 cgtaggcctg ttgataagcc ccaggatttc ggtgaggtgt ttaacatgtt tgataatgaa 780 cctagtacag ctactgtgaa gaacatgcat cgtgatcgct atcaagtcct caggaagtgg 840 agtgccactg tcactggtgg tcagtatgct agcaaggagc aggctttagt tagacgtttt 900 tttagagtta ataattatgt tgtgtataat cagcaagagg ctggcaagta tgaaaatcat 960 actgagaatg cattgatgct gtacatggcg tgtactcacg cctctaatcc tgtatacgct 1020 acgctgaaga ttagaatcta cttctacgat tcggtcagca attaataaat tttaaatttt 1080 attaaatttg actgctcaat actgtcagtc cctgtgagta cactgtacaa tacatgttct 1140 acggcggtta aaaccgtatt tatacatatg acccctaaca tgtccaggta tttgagtacg 1200 tgggtcttaa ataccctcaa gaaacgcaag gtctgaggcc gtaaggtcgt ccagattttg 1260 aaatccatcc agcattgatg tagtcccaac gctttcctca ggttgtggtt gaaccgtatc 1320 tggacggtta ttatgtccat cgtcgttccg aacggccggc tgctgtggtc tatgatcttg 1380 aaatagaggg gatttggaac ctcccaggta tagacgccat tcatcgcctg agctgcagtg 1440 atgagttccc ctgtgcgtga atccatggtt gtggcagttg atgtgcacgt agtacgagca 1500 cccgcagttg aggtctactc tccgtcgccg gatggcccta cgcttagctg ccctgtgttt 1560 aaccttgatc ggcactggag tagagtggcc cgtcgaggga gatgaaggtc gcatttctta 1620 ttgcccaagc cttcaatgcc gtattcttcg gctcgtcaag gaactcttta tagctggaat 1680 tgggcccagg attgcacagg aagatagtgg gtatcccacc tttaatttga accggctttc 1740 cgtatttggt gttgctttgc cagtccttct gggcccccat gaattccttg aagtgcttta 1800 ggtagtgggg atctacgtca tcaatgacgt tgtaccacgc gtcgttgctg tagaccctag 1860 gactcaagtc cagatgtcca cataggtaat tatgtggacc caatgcacga gcccacatag 1920 tcttacctgt ccgactatcg ccctcgatta cgattgactt cggtctcaaa ggccgcgcag 1980 cgggatccat gacattttca tggaaccata catcgagttc ttctggaact cgatcaaatg 2040 tcgacagacc aaaaggactc tcatagatag tttcaggtgt tgtaaaaatt ttatccaaat 2100 tggcattcaa attatgaaac tgcaggacgt agtctttagg agctagctct ctaaggatct 2160 taagagcctc tgacttactg ccgctgttaa ttgcggcggc gtatgcatca tttgccgact 2220 gttggcctcc ccgtgcagac ctgccgtcga cctggaattc tccccattcc agagtatctc 2280 cgtccttgtc gatgtaggac ttgacgtcgg agctggattt agctccctga atgtttggat 2340 ggaaatgtgc tgacctggtt ggggatacca ggtcgaagaa tctcttattc tggcatttga 2400 acttgccctc gtactggacg agcacatgca gatgaggttc cccattctca tgcagttctc 2460 tgcagatttt aatgaattta gggtttgtag gtgtttctag gtttttaatt tgggaaagcg 2520 tctcttcttt ggagagagag catctgggat aagtgaggaa ataattcttg gcgtttataa 2580 taaaacgctt aggaggtgac attctctctc ctcaatcggt actcaaacat ttagccccta 2640 tattaggtac tcaatatata catgagaccc aaatggcata tatggtaata atgggaatat 2700 aatttgaatt tgaaagcggc catccgtata atatttataa 2740 //