ID   HM209070; SV 1; linear; genomic RNA; STD; VRL; 1801 BP.
XX
AC   HM209070;
XX
DT   31-JAN-2013 (Rel. 115, Created)
DT   12-DEC-2013 (Rel. 119, Last updated, Version 2)
XX
DE   Rice black streaked dwarf virus isolate SDJNiR23 segment S10, complete
DE   sequence.
XX
KW   .
XX
OS   Rice black streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1801
RX   DOI; 10.1007/s00705-013-1766-8.
RX   PUBMED; 23807744.
RA   Yin X., Zheng F.Q., Tang W., Zhu Q.Q., Li X.D., Zhang G.M., Liu H.T.,
RA   Liu B.S.;
RT   "Genetic structure of rice black-streaked dwarf virus populations in
RT   China";
RL   Arch. Virol. 158(12):2505-2515(2013).
XX
RN   [2]
RP   1-1801
RA   Zhu Q.;
RT   ;
RL   Submitted (08-MAY-2010) to the INSDC.
RL   Department of Plant Pathology, Shandong Agricultural University, No. 61,
RL   Daizong Street, Tai'an, Shandong 271018, China
XX
DR   MD5; 52355a5890117f32e6b7a53fd4e72558.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1801
FT                   /organism="Rice black streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="maize"
FT                   /isolate="SDJNiR23"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="20-Jul-2008"
FT                   /PCR_primers="fwd_name: P1, fwd_seq: aagtttttttcctcaccca,
FT                   rev_name: P2, rev_seq: gacaatagctgaatttcccccta"
FT                   /db_xref="taxon:10990"
FT   5'UTR           1..21
FT   CDS             22..1698
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7N799"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:L7N799"
FT                   /protein_id="ADI33262.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT                   LNIVKAPHVASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT                   PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIETLTEGNITLKPFSADGL
FT                   EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVKLLMRTGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT                   SLLEQTWSAVASFVETWQVKSKVKADDPDEYEMTSLSTLRTNYDGTSTSSPFTDKKFID
FT                   WYIKTFSKTEKGSSLRRNELEEKSATSTSTTIKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT                   THKGEMSLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT                   DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
XX
SQ   Sequence 1801 BP; 581 A; 332 C; 323 G; 565 T; 0 other;
     aagttttttt cctcacccat aatggctgac ataagactcg atatagcgcc cgatcttatc        60
     cataatggtg taccccagag actttccgat acaataattt taaacaaccg accaacaatc       120
     actctgttat ctcatttcaa caatctattt catgaattaa acattgtcaa agcgccccac       180
     gttgcatctt cccaaactac cgttaattta tacattcgca aacatttgtt gacccgactt       240
     cacgatagat tgcaaaccgt agaaactagc accttaccca acatcacaca acttaaagac       300
     catattcgta gtttctttca aaatgaacac caacctattt ttcagaccct aacgaacaat       360
     gacctgagcg aagaatttgt aggtgtgact acttttggac taagcttatt tgctacctcc       420
     aaacttgatg ctgaacaaat agaacgtgtg caaattgaga ccttaactga aggaaatatt       480
     acgttgaagc ccttttccgc tgatggttta gaagtcattc tcgatgatag ttatattggt       540
     atagttggca aaattccagg tttagaagtt cataaattgt tagataaatg ttgtcgtgaa       600
     gttcctgctc aaatgggaat acttactgat gaagttaaac ttttgatgcg tactggtaaa       660
     ttaagaattg atggtggtta tgatttcaat tgtcccgcaa gcactacaga tgttactcac       720
     tacggtggtt atgaccaatt ttcacgtcaa atgttcgaac gcctaaatct attttataac       780
     attagtctta gcataattcc cgtttcagct ttgaaaacag ttcatttatt tgaaaaagaa       840
     ttaagtgttt tggatgcaga taaatctttg cttgaacaaa cttggagcgc agtagcgtca       900
     tttgttgaaa cttggcaagt taaatctaaa gttaaagctg atgatcccga tgaatacgaa       960
     atgaccagtt tgtccacttt gcgtactaat tacgatggta cttctacttc tagtcccttt      1020
     acagataaga aattcattga ctggtatatt aagacttttt ccaagactga gaaaggatcg      1080
     tctttgcgtc gaaatgaatt agaagagaaa agtgccacta gtacatcaac tacaataaag      1140
     aaggttaaaa ttcatttttc cgttcaatat tttgacgaat ttaaagttaa tggacacgaa      1200
     aaaagcattg tagttcaaac tcataaaggc gaaatgtcat tagattatta tcgtaaaatt      1260
     ggcgaagtgt tgagtgcgat ttggaaacgc ggtaaatctt tagctgtacc ttgttttgat      1320
     tacattaaac ttggcgttga gaaagcattt catttggcac ccgtaattat gaagaagtat      1380
     aacttgacga tcgacgacat tatcaacttt attgataaag gaccttccta tttagctaag      1440
     ttggataaaa ttgatgattg gtctttaatt tcaaagctta ttattactag tgttttacct      1500
     aacatcattc aagctgttta taaaaccgat ccaagtaata atgttatgaa ctcagtaatt      1560
     atcagtagag cgaacaattt gctgaaatct gatagggaca ggctgttaaa gaaggcactt      1620
     tccgccaacg tttcttcttc caacacatct agtcatgagc acacacagaa gatagtatta      1680
     aacaaagtaa caagatgacc actgggagta catcattagt gcgactagtt cagtgctgtg      1740
     cgatcttcag ttcattatcg atgccgagtg acgacggcta gggggaaatt cagctattgt      1800
     c                                                                      1801
//